mRNA_H-elongata_contig176531.4620.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig176531.4620.1
Unique NamemRNA_H-elongata_contig176531.4620.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Match: D7FWL0_ECTSI (Adenylosuccinate synthetase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWL0_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.220e-49
Identity = 82/95 (86.32%), Postives = 87/95 (91.58%), Query Frame = 1 
Query:    7 IVGMTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPIKITNIYGTVKAYCTRVGEGPFPTEALDHLGETLR 291
            IV MT DTIALTN AFD+GKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPP KI+NI+GTVK+YCTRVGEGPFPTE L   G+TLR
Sbjct:  252 IVNMTADTIALTNTAFDSGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPNKISNIFGTVKSYCTRVGEGPFPTETLGETGDTLR 346
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BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Match: A0A836CHU9_9STRA (Adenylosuccinate synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHU9_9STRA)

HSP 1 Score: 159 bits (402), Expect = 4.760e-45
Identity = 76/95 (80.00%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:    4 QIVGMTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPIKITNIYGTVKAYCTRVGEGPFPTEALDHLGETL 288
            QI  MTVDTI   N A+D GKRIL+EGANATMLDIDFGTYPYVTSSNPS+GSVCTGLGV PIK+++IYGTVKAYCTRVGEGPFPTE  D  GE L
Sbjct:  204 QIWDMTVDTIEYVNTAYDDGKRILIEGANATMLDIDFGTYPYVTSSNPSIGSVCTGLGVAPIKLSSIYGTVKAYCTRVGEGPFPTELHDDTGEFL 298
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BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Match: A0A6T5PZ90_HETAK (Adenylosuccinate synthetase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PZ90_HETAK)

HSP 1 Score: 153 bits (386), Expect = 3.040e-42
Identity = 73/96 (76.04%), Postives = 80/96 (83.33%), Query Frame = 1 
Query:    4 QIVGMTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPIKITNIYGTVKAYCTRVGEGPFPTEALDHLGETLR 291
            Q++ MTVDTI L N    AGKRIL+EGANATMLDIDFGTYPYVTSSNPSVGS+CTGLGV P KI  ++G  KAYCTRVGEGPFPTE L+ LGE LR
Sbjct:  267 QLLEMTVDTIELVNRQHRAGKRILIEGANATMLDIDFGTYPYVTSSNPSVGSICTGLGVSPTKIRQVWGVCKAYCTRVGEGPFPTELLNKLGEHLR 362
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BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Match: A0A7S2Y1Y3_9STRA (Adenylosuccinate synthetase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Y3_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.510e-42
Identity = 67/95 (70.53%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    7 IVGMTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPIKITNIYGTVKAYCTRVGEGPFPTEALDHLGETLR 291
            ++ +T DT++  N  +D G +IL+EGANATMLD+DFGTYPYVTSSNPSVGSVCTGLG+ P+K+++I+GTVKAYCTRVGEGPFPTE LD LGE +R
Sbjct:  272 LLELTTDTVSYINEKYDKGHKILIEGANATMLDVDFGTYPYVTSSNPSVGSVCTGLGIAPVKLSHIWGTVKAYCTRVGEGPFPTELLDALGEEIR 366
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BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Match: A0A4D9CM09_9STRA (Adenylosuccinate synthetase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CM09_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.540e-41
Identity = 71/97 (73.20%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    1 PQIVGMTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPIKITNIYGTVKAYCTRVGEGPFPTEALDHLGETLR 291
            P ++ +  DTI  TNAAFD+GK++LVEGANATMLDIDFGTYPYVTSSNPS+GSVCTGLG+ P K+  I GTVK+YCTRVGEGPFPTE LD  G+ LR
Sbjct:  325 PILLPLIRDTIEFTNAAFDSGKKVLVEGANATMLDIDFGTYPYVTSSNPSIGSVCTGLGIAPNKLGEIIGTVKSYCTRVGEGPFPTELLDAQGDELR 421
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BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Match: A0A7S1GQU1_CYCTE (Adenylosuccinate synthetase n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQU1_CYCTE)

HSP 1 Score: 149 bits (377), Expect = 7.740e-41
Identity = 72/86 (83.72%), Postives = 78/86 (90.70%), Query Frame = 1 
Query:    4 QIVGMTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPIKITNIYGTVKAYCTRVGEGPFPTE 261
            ++ G TVDTIA TNA FDAGK+ILVEGANATMLDIDFGTYP+VTSSNPSVGSV TGLGV P K+ +IYGTVKAYCTRVGEGPFPTE
Sbjct:  273 RVGGFTVDTIAYTNAQFDAGKKILVEGANATMLDIDFGTYPFVTSSNPSVGSVLTGLGVSPRKLRSIYGTVKAYCTRVGEGPFPTE 358
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BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Match: A0A7S3GNJ4_9STRA (Adenylosuccinate synthetase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GNJ4_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.820e-40
Identity = 68/96 (70.83%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    4 QIVGMTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPIKITNIYGTVKAYCTRVGEGPFPTEALDHLGETLR 291
            +++ +  DTI   + A D GK IL+EGANATMLD+DFGTYPYVTSSNPSVGS CTGLGVPP  I ++ G VKAYCTRVGEGPFPTE LD  GETLR
Sbjct:   68 ELLPLITDTIVYCSDALDQGKNILIEGANATMLDLDFGTYPYVTSSNPSVGSSCTGLGVPPQDIRSVSGIVKAYCTRVGEGPFPTELLDTTGETLR 163
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BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Match: H3GV61_PHYRM (Adenylosuccinate synthetase n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GV61_PHYRM)

HSP 1 Score: 149 bits (375), Expect = 2.830e-40
Identity = 70/95 (73.68%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    4 QIVGMTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPIKITNIYGTVKAYCTRVGEGPFPTEALDHLGETL 288
            QI+GMTVDT+A  N A+ AGK++LVEGANATMLDIDFGTYPYVTSSNPS+GSVCTG G+ P ++  I G VKAYCTRVGEGPFPTE  D +GE L
Sbjct:  330 QILGMTVDTVAYLNNAYVAGKKVLVEGANATMLDIDFGTYPYVTSSNPSIGSVCTGGGISPNRLNGIIGIVKAYCTRVGEGPFPTELHDKVGEHL 424
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BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Match: A0A7S2YHI3_9STRA (Adenylosuccinate synthetase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YHI3_9STRA)

HSP 1 Score: 145 bits (366), Expect = 6.910e-40
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    1 PQIVGMTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPIKITNIYGTVKAYCTRVGEGPFPTE 261
            P++  MT+DTI  TN  F  GKRILVEGANATMLDIDFGTYP+VTSSNPSVGSV TGLGV P+K+  IYGTVKAYCTRVGEGPFPTE
Sbjct:  315 PRVKDMTIDTIEYTNKQFSDGKRILVEGANATMLDIDFGTYPFVTSSNPSVGSVLTGLGVSPMKLRGIYGTVKAYCTRVGEGPFPTE 401
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BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Match: A0A484EAW6_BRELC (Adenylosuccinate synthetase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EAW6_BRELC)

HSP 1 Score: 142 bits (359), Expect = 1.710e-39
Identity = 67/95 (70.53%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:    4 QIVGMTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVCTGLGVPPIKITNIYGTVKAYCTRVGEGPFPTEALDHLGETL 288
            +I+ MTVD+++  N A+ AGK+ILVEGANATMLDIDFGTYPYVTSSNPS+GSVCTG G+ P ++  I G VKAYCTRVGEGPFPTE  D++GE L
Sbjct:  104 KILTMTVDSVSYLNNAYVAGKKILVEGANATMLDIDFGTYPYVTSSNPSIGSVCTGGGISPNRLNGIIGIVKAYCTRVGEGPFPTELHDNVGEHL 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig176531.4620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWL0_ECTSI1.220e-4986.32Adenylosuccinate synthetase n=2 Tax=Ectocarpus Tax... [more]
A0A836CHU9_9STRA4.760e-4580.00Adenylosuccinate synthetase n=1 Tax=Tribonema minu... [more]
A0A6T5PZ90_HETAK3.040e-4276.04Adenylosuccinate synthetase n=1 Tax=Heterosigma ak... [more]
A0A7S2Y1Y3_9STRA4.510e-4270.53Adenylosuccinate synthetase n=1 Tax=Fibrocapsa jap... [more]
A0A4D9CM09_9STRA1.540e-4173.20Adenylosuccinate synthetase n=1 Tax=Nannochloropsi... [more]
A0A7S1GQU1_CYCTE7.740e-4183.72Adenylosuccinate synthetase n=2 Tax=Cyclophora ten... [more]
A0A7S3GNJ4_9STRA1.820e-4070.83Adenylosuccinate synthetase n=1 Tax=Spumella elong... [more]
H3GV61_PHYRM2.830e-4073.68Adenylosuccinate synthetase n=2 Tax=Phytophthora r... [more]
A0A7S2YHI3_9STRA6.910e-4079.31Adenylosuccinate synthetase (Fragment) n=1 Tax=Amp... [more]
A0A484EAW6_BRELC1.710e-3970.53Adenylosuccinate synthetase n=1 Tax=Bremia lactuca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig176531contigH-elongata_contig176531:413..996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue7.5e-40
Seed eggNOG ortholog2880.D7FWL0
Preferred nameADSS
KEGG rclassRC00458,RC00459
KEGG koko:K01939
KEGG ReactionR01135
KEGG Pathwayko00230,ko00250,ko01100,map00230,map00250,map01100
KEGG ModuleM00049
GOsGO:0000166,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003779,GO:0003824,GO:0003924,GO:0004019,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006106,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006520,GO:0006531,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007517,GO:0007519,GO:0008092,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0014706,GO:0014902,GO:0014904,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016874,GO:0016879,GO:0017076,GO:0017111,GO:0017144,GO:0018130,GO:0019001,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0030154,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034404,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0042221,GO:0042278,GO:0042301,GO:0042451,GO:0042455,GO:0042592,GO:0042692,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043565,GO:0043648,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0046033,GO:0046040,GO:0046085,GO:0046086,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046686,GO:0046716,GO:0046983,GO:0048046,GO:0048468,GO:0048513,GO:0048731,GO:0048741,GO:0048747,GO:0048856,GO:0048869,GO:0050896,GO:0051015,GO:0051146,GO:0051716,GO:0055001,GO:0055002,GO:0055086,GO:0060249,GO:0060537,GO:0060538,GO:0061061,GO:0061483,GO:0065007,GO:0065008,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901657,GO:1901659,GO:1990837
EggNOG free text desc.adenylosuccinate synthase activity
EggNOG OGsCOG0104@1,KOG1355@2759
EC6.3.4.4
COG Functional cat.F
BiGG ReactioniRC1080.CRv4_Au5_s17_g7726_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig176531.4620.1prot_H-elongata_contig176531.4620.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig176531 413..981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.7598495-CDS-H-elongata_contig176531:412..5141622930021.7598495-CDS-H-elongata_contig176531:412..514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176531 413..514 -
1691679249.6019433-CDS-H-elongata_contig176531:412..5141691679249.6019433-CDS-H-elongata_contig176531:412..514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176531 413..514 -
1622930021.8234344-CDS-H-elongata_contig176531:804..9811622930021.8234344-CDS-H-elongata_contig176531:804..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176531 805..981 -
1691679249.6159282-CDS-H-elongata_contig176531:804..9811691679249.6159282-CDS-H-elongata_contig176531:804..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig176531 805..981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.8378277-UTR-H-elongata_contig176531:981..9961622930021.8378277-UTR-H-elongata_contig176531:981..996Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176531 982..996 -
1691679249.6269312-UTR-H-elongata_contig176531:981..9961691679249.6269312-UTR-H-elongata_contig176531:981..996Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig176531 982..996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig176531.4620.1

>prot_H-elongata_contig176531.4620.1 ID=prot_H-elongata_contig176531.4620.1|Name=mRNA_H-elongata_contig176531.4620.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MTVDTIALTNAAFDAGKRILVEGANATMLDIDFGTYPYVTSSNPSVGSVC
TGLGVPPIKITNIYGTVKAYCTRVGEGPFPTEALDHLGETLR*
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mRNA from alignment at H-elongata_contig176531:413..996-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig176531.4620.1 ID=mRNA_H-elongata_contig176531.4620.1|Name=mRNA_H-elongata_contig176531.4620.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=584bp|location=Sequence derived from alignment at H-elongata_contig176531:413..996- (Himanthalia elongata Himel1 dioecious)
CCACAGATTGTGGGCATGACAGTAGACACGATCGCGCTGACGAACGCGGC
CTTCGACGCCGGAAAGCGGATCCTGGTTGAGGGCGCCAACGCCACCATGC
TCGATATCGACTTTGGAACTTACCCGTACGTGACGTCCTCTAACCCCAGC
GTCGGGAGCGTGTGCACGGGGCTCGGGGTCCCCCCCATCAAGGTGCGCTA
CTGTCGCATCATGCCCTACACCTCTCTGCCTCTTAATTGTCTTCTCGAGC
GCAGAGTTGAGTCGAGTCGAGTCGATCCACCAACACACGCGCGGTTTGGC
GTGGAGTGTTCTCGAACGGCGGAGATGGCGTGTGTGTAGAAGGAAGTTTT
GATACTTTGCGATCCTAGTCTCCTCTCCCTTTTCCCCCTTCTCGTGCACG
CCTTGTACATTCATGCACTCTTCACAAAATATTGCTCATGATAACTTAAC
GCCGCGGCCGACCTGTCCGCCTGTCGGTGCAGATCACGAACATCTACGGC
ACCGTAAAAGCGTACTGCACTCGTGTCGGAGAAGGACCGTTCCCCACCGA
GGCTCTCGACCACCTGGGCGAAACACTCCGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig176531:413..996-

>mRNA_H-elongata_contig176531.4620.1 ID=mRNA_H-elongata_contig176531.4620.1|Name=mRNA_H-elongata_contig176531.4620.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig176531:413..996- (Himanthalia elongata Himel1 dioecious)
ATGACAGTAGACACGATCGCGCTGACGAACGCGGCCTTCGACGCCGGAAA
GCGGATCCTGGTTGAGGGCGCCAACGCCACCATGCTCGATATCGACTTTG
GAACTTACCCGTACGTGACGTCCTCTAACCCCAGCGTCGGGAGCGTGTGC
ACGGGGCTCGGGGTCCCCCCCATCAAGATGACAGTAGACACGATCGCGCT
GACGAACGCGGCCTTCGACGCCGGAAAGCGGATCCTGGTTGAGGGCGCCA
ACGCCACCATGCTCGATATCGACTTTGGAACTTACCCGTACGTGACGTCC
TCTAACCCCAGCGTCGGGAGCGTGTGCACGGGGCTCGGGGTCCCCCCCAT
CAAGATCACGAACATCTACGGCACCGTAAAAGCGTACTGCACTCGTGTCG
GAGAAGGACCGTTCCCCACCGAGGCTCTCGACCACCTGGGCGAAACACTC
CGGTAGATCACGAACATCTACGGCACCGTAAAAGCGTACTGCACTCGTGT
CGGAGAAGGACCGTTCCCCACCGAGGCTCTCGACCACCTGGGCGAAACAC
TCCGGTAG
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