mRNA_H-elongata_contig17649.4618.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17649.4618.1
Unique NamemRNA_H-elongata_contig17649.4618.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17649.4618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17649contigH-elongata_contig17649:5744..5940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size181
Cds size135
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17649.4618.1prot_H-elongata_contig17649.4618.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17649 5744..5894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.5988243-CDS-H-elongata_contig17649:5743..58221622930021.5988243-CDS-H-elongata_contig17649:5743..5822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17649 5744..5822 -
1691679249.5267737-CDS-H-elongata_contig17649:5743..58221691679249.5267737-CDS-H-elongata_contig17649:5743..5822Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17649 5744..5822 -
1622930021.6116424-CDS-H-elongata_contig17649:5838..58941622930021.6116424-CDS-H-elongata_contig17649:5838..5894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17649 5839..5894 -
1691679249.5366921-CDS-H-elongata_contig17649:5838..58941691679249.5366921-CDS-H-elongata_contig17649:5838..5894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17649 5839..5894 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.6256192-UTR-H-elongata_contig17649:5894..59401622930021.6256192-UTR-H-elongata_contig17649:5894..5940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17649 5895..5940 -
1691679249.5526938-UTR-H-elongata_contig17649:5894..59401691679249.5526938-UTR-H-elongata_contig17649:5894..5940Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17649 5895..5940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17649.4618.1

>prot_H-elongata_contig17649.4618.1 ID=prot_H-elongata_contig17649.4618.1|Name=mRNA_H-elongata_contig17649.4618.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
MNDTLSSDFDTAMILISISGEGGLLLFLRCRKKSNKKQPNKKQFM
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mRNA from alignment at H-elongata_contig17649:5744..5940-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17649.4618.1 ID=mRNA_H-elongata_contig17649.4618.1|Name=mRNA_H-elongata_contig17649.4618.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=197bp|location=Sequence derived from alignment at H-elongata_contig17649:5744..5940- (Himanthalia elongata Himel1 dioecious)
ACTCTGATGGTATCGGAAGTAACTTGACCAGTTTCTTGTACCAAAAATGA
ACGACACTCTTTCTTCCGATTTCGATACTGCAATGATATTGATATCGATA
TCGCGGTGAGGGAAGGAGCGGTGAGGGAGGGCTTTTGCTTTTCCTCAGAT
GTCGCAAAAAGTCAAACAAAAAACAACCAAACAAGAAACAATTCATG
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Coding sequence (CDS) from alignment at H-elongata_contig17649:5744..5940-

>mRNA_H-elongata_contig17649.4618.1 ID=mRNA_H-elongata_contig17649.4618.1|Name=mRNA_H-elongata_contig17649.4618.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig17649:5744..5940- (Himanthalia elongata Himel1 dioecious)
ATGAACGACACTCTTTCTTCCGATTTCGATACTGCAATGATATTGATATC
GATATCATGAACGACACTCTTTCTTCCGATTTCGATACTGCAATGATATT
GATATCGATATCCGGTGAGGGAGGGCTTTTGCTTTTCCTCAGATGTCGCA
AAAAGTCAAACAAAAAACAACCAAACAAGAAACAATTCATGCGGTGAGGG
AGGGCTTTTGCTTTTCCTCAGATGTCGCAAAAAGTCAAACAAAAAACAAC
CAAACAAGAAACAATTCATG
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