mRNA_H-elongata_contig17641.4614.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: UPI0005697575 (hypothetical protein n=1 Tax=Methylomicrobium lacus TaxID=136992 RepID=UPI0005697575) HSP 1 Score: 133 bits (335), Expect = 1.130e-33 Identity = 93/275 (33.82%), Postives = 136/275 (49.45%), Query Frame = 1
Query: 1 SSLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NG--RFIGRNIIP-------EGDIVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL-----PSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETAT 783
++L+LD L Y G F + L+ RLAP+Q + GHP T+G +D FISS +FEI T E + N + R +P E + HLY C Q K HP+FD + +L +DP ++L + A++ +R+ ++ P +R++FL + ++A D ML + +S EA AVG P+VTLP E G +G D +A N LDYI A+RLAND +R VSA+IL + LLF + T
Sbjct: 16 AALELDVLFYQDIGMDPFTYFLAFARLAPIQCT-SFGHPDTTGIRNMDGFISSGLFEIENAQTHYSETLHVLSNNSFLTYYYRTDLPTILKSRTEYGLSNEKHLYICPQTLYKLHPSFDHILANILRSDPLGNIVLLEDSVANFAELLRQRFQVSM-PDVADRVIFLPPQNTVDYINLIAVSDAMLDIPSFNGMNSSLEAFAVGTPIVTLPGELQRTRHGAGMYRRMGFSD-CIAENTLDYIKIALRLANDLLFRREVSAKILANNHLLFEDEGT 287
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A1F3AU20_9PROT (Glyco_transf_41 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium RIFOXYD12_FULL_60_8 TaxID=1797233 RepID=A0A1F3AU20_9PROT) HSP 1 Score: 136 bits (343), Expect = 5.440e-33 Identity = 90/266 (33.83%), Postives = 133/266 (50.00%), Query Frame = 1
Query: 1 SSLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEG------DIVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL----PSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLF 768
S+L+LD LL+ G F +LL+ RLAP+Q + GHP+TSG + +D+F+SS E+P + E R +GR P+ + HLY C Q K HP D +L DP +++L R+ R+LG + R+ +L + HP +E + DVML P + G+TS +A AVG P++TLP T +GL+D + A+ DY++KAVRL DR R VS IL++ L+
Sbjct: 372 SALELDALLFTDLGMDPFTYLLAFSRLAPVQATTW-GHPVTSGIDTVDYFLSSRHLEVPEADQDYSEHLIRLSAPPTCLGRPESPKRLDRAHFGLDENAHLYICPQTLFKLHPDIDAIFRAILVRDPLGQVVLIEGRADWTNTLRARFARSLG-HTVGRVRYLPRLSHPEFLEFLRLGDVMLDPLHFSGGLTSLQAFAVGTPIITLPARYMRGRVTYAYWKQMGLDDGIAASVE-DYVNKAVRLGTDRAERSRVSKAILEACPQLY 634
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A3L7RUW9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7RUW9_9BACT) HSP 1 Score: 131 bits (329), Expect = 1.730e-32 Identity = 87/271 (32.10%), Postives = 133/271 (49.08%), Query Frame = 1
Query: 7 LQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEGD--------IVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL-----PSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETA 780
L+LD LL+ G L+ R+AP+Q GHP T+G +D+F+SS + + E R G + R P + G LY C Q KFHP D+ + G+L+ADP R+++ P K RW +TL +R+VFL + + + ++ CDV+L P +G G +S+EALA+G PV+TLP+ T G + + D +V +YI+ AVRLA D+ + ++ ARI +LF + A
Sbjct: 71 LKLDVLLFADVGMDALCSTLAFSRMAPVQC-VTWGHPETTGSPTMDYFLSSELLDEQAAQEHYTETLVRMPLTGTYYERPQTPANPETIRRLPGLEGSGPLYGCPQSLFKFHPDDDIVLRGILEADPEGRIVVIEGRVPEWTKRLRSRWQKTLA-DVHDRIVFLPAIANDEYLRLLRICDVILDPLHFGGGNSSYEALAMGTPVITLPSPFLRGRITAGLYRKMQMTDCIVKTTD-EYIAIAVRLAKDQAFGQMIRARITAQSAVLFDDPA 338
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A847H0R7_9BACT (TIGR03032 family protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847H0R7_9BACT) HSP 1 Score: 134 bits (336), Expect = 7.430e-32 Identity = 95/274 (34.67%), Postives = 138/274 (50.36%), Query Frame = 1
Query: 1 SSLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNII---PEGDIVGGI----HLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLLPS------TAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSS-----LGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLF 768
+ L LD L++ G L+ R+AP+Q GHP T+G +D+F+SS + E E+ R G + R + P G+ H+Y C Q KFHP +DV + G+L+ADP L++P TA++ +RW RTL P A R+ F+ + + ++A DVML P+ +G G T++EALAVG PVVT P F G+++ +GL D VA Y+S AVRLA DR +R V I + +LF
Sbjct: 714 AELGLDILVFADVGMDTLTQTLAYSRMAPIQC-VTWGHPDTTGSPAMDYFVSSRLLETDEADGHYSEQLVRLPNLGVYYARPALSGPPRNREFFGLDPTRHVYLCPQTLFKFHPEYDVVLRGILEADPRGDLVVPEGRVPAWTARLR-QRWARTL-PDAGRRVRFVPAQPNADFLHLLAQADVMLDPFPFGGGNTTYEALAVGTPVVTKPGR-----FLRGRIAGALYQRMGL-DSAVAATDEQYVSLAVRLATDRDFRRTVQREIADTCPVLF 978
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A6I6ACV5_9PLAN (Tetratricopeptide repeat protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6ACV5_9PLAN) HSP 1 Score: 133 bits (334), Expect = 1.460e-31 Identity = 87/271 (32.10%), Postives = 136/271 (50.18%), Query Frame = 1
Query: 4 SLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEG-------DIVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLLPSTAKMHSERWNRTLG-------PGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGE 774
SL+LD L Y G F L+ R AP+Q GHP+T+G + ID+FISS + E E+ R + R +PE + H+Y C Q KFHP FD + G+L DP AR+++ + + RW L P ++R++FL M P + ++ DVML P +G G TS++++A+G P+VTLP+ T+ +GL D +V++ +YI A R+ +D +RD + +IL +L+F +
Sbjct: 642 SLELDVLFYADIGMDPFIFSLATTRHAPVQC-VTWGHPVTTGLKTIDYFISSELVEAEDADDHYTEQLVRLKDLPAYYYRPALPEEIKPRAAFGLSDDDHIYACPQTLFKFHPEFDQVLAGILRKDPQARIVM---IRDQTSRWKDLLVERFQKSFPDVVDRILFLRGMSTPDFLNLIYISDVMLDPLHFGGGNTSYQSMAIGTPIVTLPSSYMRGRVTLAMYKKMGLTDCIVSSVE-EYIDLACRIGSDENFRDQLRLKILAKSQLIFED 907
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A1W9MSC4_9DELT (Glyco_transf_41 domain-containing protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9MSC4_9DELT) HSP 1 Score: 130 bits (328), Expect = 1.810e-31 Identity = 90/266 (33.83%), Postives = 134/266 (50.38%), Query Frame = 1
Query: 16 DCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEGD-------IVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL------PSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGE 774
D L Y G + L+ RLAP+Q GHP+T+G +D+FISS E+P E R G + +P+ +LY C KFHP FD+A+ +L +DP A L+L A++ +R+++T P A++R+ F+ M M ++A DV+L P +G G T++EALA G+P VT P T +G+ D VANNP YI A+RLAND+ +R+ V A+I + L+F +
Sbjct: 209 DILFYPDIGMDSLTYFLAFSRLAPVQC-MTWGHPVTTGIPNMDYFISSQDLELPGAEDHYSERLVRLSRLGVYYYPPELPDTKPSREKFAFPEDCNLYACPHAPFKFHPDFDLALAAILRSDPKALLILIEGGTFKHWAELLLKRFSKTF-PEAIDRVRFMPAMPTKDFMSLMATADVLLEPPYFGGGNTTYEALACGVPFVTWPGPFMRGRVTFALYRQMGVLD-CVANNPQSYIEIAIRLANDKAWREEVRAKIRANSHLIFED 471
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: UPI001EF492FF (tetratricopeptide repeat protein n=1 Tax=Candidatus Nitrotoga sp. M5 TaxID=2890409 RepID=UPI001EF492FF) HSP 1 Score: 131 bits (329), Expect = 5.130e-31 Identity = 89/267 (33.33%), Postives = 126/267 (47.19%), Query Frame = 1
Query: 13 LDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEGD------IVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL-----PSTAKMHSERWNRTL---GPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFG 771
LD L+Y G LL+ RLAP+Q + G GHP+TSGH ID++ SS+ E E+ G + + ++P + G LY C Q K HP D + +L+ DP ++L P+ R ++TL G R + L M H + V CDVML W G T+ +ALA GLPV+TLP E + G + +GL DEL++ N DYI KA+R+ D +R V RI+ +F
Sbjct: 424 LDILVYPELGMDNTSFLLAAMRLAPVQCA-GWGHPVTSGHANIDYYFSSAAMEPDNAEIHYSEKLKLFEGLGTYYSKPVLPTSAQRADFALPEGKTLYLCPQSLFKIHPDNDALLARILERDPNGVIVLFAGRHPNITNAFFARLSQTLREHGMEPQGRGIILPSMAHDDYLRVNLLCDVMLDTLHWSGGNTTLDALACGLPVITLPGEFMRGRQSYGMLKCMGL-DELISKNQDDYIEKAIRVGKDNAWRQQVVQRIIAGSNSIFN 688
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A350K8L9_9PLAN (Glyco_transf_41 domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K8L9_9PLAN) HSP 1 Score: 129 bits (324), Expect = 1.470e-30 Identity = 92/273 (33.70%), Postives = 145/273 (53.11%), Query Frame = 1
Query: 4 SLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEG-GEEANRRG*NGRFIGRNIIPE---GDIVGGI----HLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL--PSTAKMHS---ERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETAT 783
SL+LD L Y G F L+ R AP+Q GHPIT+G + ID+FISS + E P +A E E+ + + R +P+ V G+ H+Y C Q K HP FD + G+L DP AR+++ T+K ER+ +T P +NR+ +L M P + ++ DV+L P +G G TS++++A+G PVVTLP + + + +GL+D +V++ +YI+ A R+ +D +RD + +IL L+F + T
Sbjct: 54 SLELDVLFYADIGMDPFIFSLATTRHAPIQC-VTWGHPITTGLKTIDYFISSKLIE-PEDAQEHYTEQLVQLDSLPSYYYRPALPDKIKNRAVFGLSDDEHVYACPQTLFKIHPEFDQILAGILQQDPKARIMMIRDQTSKWKDLLVERFEKTF-PDVVNRIHWLRGMSTPDFLNLIYISDVLLDPLHFGGGNTSYQSMAIGTPVVTLPAKYMRGRGMLAIYNKMGLQDCVVSSIE-EYINLACRIGSDEAFRDQLRLKILSKSHLVFEDVNT 322
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A3L7P3B7_9BACT (TIGR03032 family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7P3B7_9BACT) HSP 1 Score: 130 bits (326), Expect = 1.570e-30 Identity = 87/277 (31.41%), Postives = 138/277 (49.82%), Query Frame = 1
Query: 1 SSLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEGD--------IVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL-----PSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLED----ELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETA 780
+ L+L L++ G L+ R+A +Q + GHP T+G E +D+F+SS + + E+ R G F R ++P + HLY C Q KFHP D+ + G+L+ADP L++ P RW +TLG ++++F+ + H + ++ CDVML P +G G +S+EALA+G PVVTLP+ F G+++S + V ++ +YIS A RL DR +R VS +I + +LF + A
Sbjct: 656 ADLKLAVLIFADVGMDALSTTLASSRMARVQCATW-GHPETTGSEFMDYFLSSELLDDESSQDHYTEQLIRMPLTGTFYERPLVPPNTASIRKRLGLPDDRHLYACPQSLFKFHPDDDIVLRGILEADPNGVLIVIEGRVPEWTIRLKSRWEKTLG-RVSSQVLFIPAIAHTEYLSLLHECDVMLDPLHFGGGNSSYEALAMGTPVVTLPSA-----FLRGRITSALYRKMKMMDCVVHSQDEYISLATRLGTDREFRKSVSQKIDAASRVLFSDPA 925
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A517PGN0_9PLAN (Protein O-GlcNAc transferase n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517PGN0_9PLAN) HSP 1 Score: 129 bits (323), Expect = 4.270e-30 Identity = 93/273 (34.07%), Postives = 140/273 (51.28%), Query Frame = 1
Query: 4 SLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEG-GEEANRRG*NGRFIGRNIIPEG-------DIVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL--PSTAKMHS---ERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETAT 783
SL+LD L Y G F L+ R AP+Q GHPIT+G + ID+FISS + E P +A E E+ R + R +PE + H+Y C Q K HP FD + G+L DP AR+++ T+K R+ RT P ++R++FL M P + ++ DV+L P +G G TS++++A+G PVVTLP + +GLED +V++ +YI A R+ D +RD + +IL L+F + +T
Sbjct: 642 SLELDVLFYADIGMDPFIFSLATTRHAPVQC-VTWGHPITTGLKTIDYFISSELIE-PEDADEHYTEQLVRLKSLPSYYYRPGLPEEIKPRAAFGLSDDDHVYACPQTLFKIHPEFDQVLAGILRKDPQARIVMIRDQTSKWKDLLVARFERTF-PDVVDRILFLRGMSTPDFLNLIYISDVLLDPLHFGGGNTSYQSMAIGTPVVTLPARYMRGRGMLAVYKKMGLEDCIVSSIE-EYIELACRIGCDEAFRDQLRLKILAKSHLIFEDIST 910 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17641.4614.1 >prot_H-elongata_contig17641.4614.1 ID=prot_H-elongata_contig17641.4614.1|Name=mRNA_H-elongata_contig17641.4614.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp MHGVLDADPWARLLLPSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMback to top mRNA from alignment at H-elongata_contig17641:3633..5275- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17641.4614.1 ID=mRNA_H-elongata_contig17641.4614.1|Name=mRNA_H-elongata_contig17641.4614.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1643bp|location=Sequence derived from alignment at H-elongata_contig17641:3633..5275- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17641:3633..5275- >mRNA_H-elongata_contig17641.4614.1 ID=mRNA_H-elongata_contig17641.4614.1|Name=mRNA_H-elongata_contig17641.4614.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig17641:3633..5275- (Himanthalia elongata Himel1 dioecious)back to top |