mRNA_H-elongata_contig17641.4614.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17641.4614.1
Unique NamemRNA_H-elongata_contig17641.4614.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: UPI0005697575 (hypothetical protein n=1 Tax=Methylomicrobium lacus TaxID=136992 RepID=UPI0005697575)

HSP 1 Score: 133 bits (335), Expect = 1.130e-33
Identity = 93/275 (33.82%), Postives = 136/275 (49.45%), Query Frame = 1
Query:    1 SSLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NG--RFIGRNIIP-------EGDIVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL-----PSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETAT 783
            ++L+LD L Y   G   F + L+  RLAP+Q +   GHP T+G   +D FISS +FEI    T   E  +    N    +  R  +P       E  +    HLY C Q   K HP+FD  +  +L +DP   ++L      + A++  +R+  ++ P   +R++FL        + ++A  D ML    +    +S EA AVG P+VTLP E        G    +G  D  +A N LDYI  A+RLAND  +R  VSA+IL +  LLF +  T
Sbjct:   16 AALELDVLFYQDIGMDPFTYFLAFARLAPIQCT-SFGHPDTTGIRNMDGFISSGLFEIENAQTHYSETLHVLSNNSFLTYYYRTDLPTILKSRTEYGLSNEKHLYICPQTLYKLHPSFDHILANILRSDPLGNIVLLEDSVANFAELLRQRFQVSM-PDVADRVIFLPPQNTVDYINLIAVSDAMLDIPSFNGMNSSLEAFAVGTPIVTLPGELQRTRHGAGMYRRMGFSD-CIAENTLDYIKIALRLANDLLFRREVSAKILANNHLLFEDEGT 287          
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A1F3AU20_9PROT (Glyco_transf_41 domain-containing protein n=1 Tax=Alphaproteobacteria bacterium RIFOXYD12_FULL_60_8 TaxID=1797233 RepID=A0A1F3AU20_9PROT)

HSP 1 Score: 136 bits (343), Expect = 5.440e-33
Identity = 90/266 (33.83%), Postives = 133/266 (50.00%), Query Frame = 1
Query:    1 SSLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEG------DIVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL----PSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLF 768
            S+L+LD LL+   G   F +LL+  RLAP+Q +   GHP+TSG + +D+F+SS   E+P    +  E   R       +GR   P+        +    HLY C Q   K HP  D     +L  DP  +++L             R+ R+LG   + R+ +L  + HP  +E +   DVML P  +  G+TS +A AVG P++TLP        T      +GL+D + A+   DY++KAVRL  DR  R  VS  IL++   L+
Sbjct:  372 SALELDALLFTDLGMDPFTYLLAFSRLAPVQATTW-GHPVTSGIDTVDYFLSSRHLEVPEADQDYSEHLIRLSAPPTCLGRPESPKRLDRAHFGLDENAHLYICPQTLFKLHPDIDAIFRAILVRDPLGQVVLIEGRADWTNTLRARFARSLG-HTVGRVRYLPRLSHPEFLEFLRLGDVMLDPLHFSGGLTSLQAFAVGTPIITLPARYMRGRVTYAYWKQMGLDDGIAASVE-DYVNKAVRLGTDRAERSRVSKAILEACPQLY 634          
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A3L7RUW9_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7RUW9_9BACT)

HSP 1 Score: 131 bits (329), Expect = 1.730e-32
Identity = 87/271 (32.10%), Postives = 133/271 (49.08%), Query Frame = 1
Query:    7 LQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEGD--------IVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL-----PSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETA 780
            L+LD LL+   G       L+  R+AP+Q     GHP T+G   +D+F+SS + +         E   R    G +  R   P           + G   LY C Q   KFHP  D+ + G+L+ADP  R+++     P   K    RW +TL     +R+VFL  + +   + ++  CDV+L P  +G G +S+EALA+G PV+TLP+       T G    + + D +V     +YI+ AVRLA D+ +  ++ ARI     +LF + A
Sbjct:   71 LKLDVLLFADVGMDALCSTLAFSRMAPVQC-VTWGHPETTGSPTMDYFLSSELLDEQAAQEHYTETLVRMPLTGTYYERPQTPANPETIRRLPGLEGSGPLYGCPQSLFKFHPDDDIVLRGILEADPEGRIVVIEGRVPEWTKRLRSRWQKTLA-DVHDRIVFLPAIANDEYLRLLRICDVILDPLHFGGGNSSYEALAMGTPVITLPSPFLRGRITAGLYRKMQMTDCIVKTTD-EYIAIAVRLAKDQAFGQMIRARITAQSAVLFDDPA 338          
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A847H0R7_9BACT (TIGR03032 family protein n=1 Tax=Candidatus Anammoximicrobium sp. TaxID=2699742 RepID=A0A847H0R7_9BACT)

HSP 1 Score: 134 bits (336), Expect = 7.430e-32
Identity = 95/274 (34.67%), Postives = 138/274 (50.36%), Query Frame = 1
Query:    1 SSLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNII---PEGDIVGGI----HLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLLPS------TAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSS-----LGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLF 768
            + L LD L++   G       L+  R+AP+Q     GHP T+G   +D+F+SS + E         E+  R    G +  R  +   P      G+    H+Y C Q   KFHP +DV + G+L+ADP   L++P       TA++  +RW RTL P A  R+ F+    +   + ++A  DVML P+ +G G T++EALAVG PVVT P       F  G+++      +GL D  VA     Y+S AVRLA DR +R  V   I  +  +LF
Sbjct:  714 AELGLDILVFADVGMDTLTQTLAYSRMAPIQC-VTWGHPDTTGSPAMDYFVSSRLLETDEADGHYSEQLVRLPNLGVYYARPALSGPPRNREFFGLDPTRHVYLCPQTLFKFHPEYDVVLRGILEADPRGDLVVPEGRVPAWTARLR-QRWARTL-PDAGRRVRFVPAQPNADFLHLLAQADVMLDPFPFGGGNTTYEALAVGTPVVTKPGR-----FLRGRIAGALYQRMGL-DSAVAATDEQYVSLAVRLATDRDFRRTVQREIADTCPVLF 978          
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A6I6ACV5_9PLAN (Tetratricopeptide repeat protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6ACV5_9PLAN)

HSP 1 Score: 133 bits (334), Expect = 1.460e-31
Identity = 87/271 (32.10%), Postives = 136/271 (50.18%), Query Frame = 1
Query:    4 SLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEG-------DIVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLLPSTAKMHSERWNRTLG-------PGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGE 774
            SL+LD L Y   G   F   L+  R AP+Q     GHP+T+G + ID+FISS + E         E+  R      +  R  +PE         +    H+Y C Q   KFHP FD  + G+L  DP AR+++    +  + RW   L        P  ++R++FL  M  P  + ++   DVML P  +G G TS++++A+G P+VTLP+       T+     +GL D +V++   +YI  A R+ +D  +RD +  +IL   +L+F +
Sbjct:  642 SLELDVLFYADIGMDPFIFSLATTRHAPVQC-VTWGHPVTTGLKTIDYFISSELVEAEDADDHYTEQLVRLKDLPAYYYRPALPEEIKPRAAFGLSDDDHIYACPQTLFKFHPEFDQVLAGILRKDPQARIVM---IRDQTSRWKDLLVERFQKSFPDVVDRILFLRGMSTPDFLNLIYISDVMLDPLHFGGGNTSYQSMAIGTPIVTLPSSYMRGRVTLAMYKKMGLTDCIVSSVE-EYIDLACRIGSDENFRDQLRLKILAKSQLIFED 907          
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A1W9MSC4_9DELT (Glyco_transf_41 domain-containing protein (Fragment) n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9MSC4_9DELT)

HSP 1 Score: 130 bits (328), Expect = 1.810e-31
Identity = 90/266 (33.83%), Postives = 134/266 (50.38%), Query Frame = 1
Query:   16 DCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEGD-------IVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL------PSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGE 774
            D L Y   G     + L+  RLAP+Q     GHP+T+G   +D+FISS   E+P       E   R    G +     +P+              +LY C     KFHP FD+A+  +L +DP A L+L         A++  +R+++T  P A++R+ F+  M     M ++A  DV+L P  +G G T++EALA G+P VT P        T      +G+ D  VANNP  YI  A+RLAND+ +R+ V A+I  +  L+F +
Sbjct:  209 DILFYPDIGMDSLTYFLAFSRLAPVQC-MTWGHPVTTGIPNMDYFISSQDLELPGAEDHYSERLVRLSRLGVYYYPPELPDTKPSREKFAFPEDCNLYACPHAPFKFHPDFDLALAAILRSDPKALLILIEGGTFKHWAELLLKRFSKTF-PEAIDRVRFMPAMPTKDFMSLMATADVLLEPPYFGGGNTTYEALACGVPFVTWPGPFMRGRVTFALYRQMGVLD-CVANNPQSYIEIAIRLANDKAWREEVRAKIRANSHLIFED 471          
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: UPI001EF492FF (tetratricopeptide repeat protein n=1 Tax=Candidatus Nitrotoga sp. M5 TaxID=2890409 RepID=UPI001EF492FF)

HSP 1 Score: 131 bits (329), Expect = 5.130e-31
Identity = 89/267 (33.33%), Postives = 126/267 (47.19%), Query Frame = 1
Query:   13 LDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEGD------IVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL-----PSTAKMHSERWNRTL---GPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFG 771
            LD L+Y   G      LL+  RLAP+Q + G GHP+TSGH  ID++ SS+  E         E+       G +  + ++P         +  G  LY C Q   K HP  D  +  +L+ DP   ++L     P+       R ++TL   G     R + L  M H   + V   CDVML    W  G T+ +ALA GLPV+TLP E      + G +  +GL DEL++ N  DYI KA+R+  D  +R  V  RI+     +F 
Sbjct:  424 LDILVYPELGMDNTSFLLAAMRLAPVQCA-GWGHPVTSGHANIDYYFSSAAMEPDNAEIHYSEKLKLFEGLGTYYSKPVLPTSAQRADFALPEGKTLYLCPQSLFKIHPDNDALLARILERDPNGVIVLFAGRHPNITNAFFARLSQTLREHGMEPQGRGIILPSMAHDDYLRVNLLCDVMLDTLHWSGGNTTLDALACGLPVITLPGEFMRGRQSYGMLKCMGL-DELISKNQDDYIEKAIRVGKDNAWRQQVVQRIIAGSNSIFN 688          
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A350K8L9_9PLAN (Glyco_transf_41 domain-containing protein (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A350K8L9_9PLAN)

HSP 1 Score: 129 bits (324), Expect = 1.470e-30
Identity = 92/273 (33.70%), Postives = 145/273 (53.11%), Query Frame = 1
Query:    4 SLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEG-GEEANRRG*NGRFIGRNIIPE---GDIVGGI----HLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL--PSTAKMHS---ERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETAT 783
            SL+LD L Y   G   F   L+  R AP+Q     GHPIT+G + ID+FISS + E P +A E   E+  +      +  R  +P+      V G+    H+Y C Q   K HP FD  + G+L  DP AR+++    T+K      ER+ +T  P  +NR+ +L  M  P  + ++   DV+L P  +G G TS++++A+G PVVTLP +       +   + +GL+D +V++   +YI+ A R+ +D  +RD +  +IL    L+F +  T
Sbjct:   54 SLELDVLFYADIGMDPFIFSLATTRHAPIQC-VTWGHPITTGLKTIDYFISSKLIE-PEDAQEHYTEQLVQLDSLPSYYYRPALPDKIKNRAVFGLSDDEHVYACPQTLFKIHPEFDQILAGILQQDPKARIMMIRDQTSKWKDLLVERFEKTF-PDVVNRIHWLRGMSTPDFLNLIYISDVLLDPLHFGGGNTSYQSMAIGTPVVTLPAKYMRGRGMLAIYNKMGLQDCVVSSIE-EYINLACRIGSDEAFRDQLRLKILSKSHLVFEDVNT 322          
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A3L7P3B7_9BACT (TIGR03032 family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7P3B7_9BACT)

HSP 1 Score: 130 bits (326), Expect = 1.570e-30
Identity = 87/277 (31.41%), Postives = 138/277 (49.82%), Query Frame = 1
Query:    1 SSLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEGGEEANRRG*NGRFIGRNIIPEGD--------IVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL-----PSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLED----ELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETA 780
            + L+L  L++   G       L+  R+A +Q +   GHP T+G E +D+F+SS + +         E+  R    G F  R ++P           +    HLY C Q   KFHP  D+ + G+L+ADP   L++     P        RW +TLG    ++++F+  + H   + ++  CDVML P  +G G +S+EALA+G PVVTLP+      F  G+++S         + V ++  +YIS A RL  DR +R  VS +I  +  +LF + A
Sbjct:  656 ADLKLAVLIFADVGMDALSTTLASSRMARVQCATW-GHPETTGSEFMDYFLSSELLDDESSQDHYTEQLIRMPLTGTFYERPLVPPNTASIRKRLGLPDDRHLYACPQSLFKFHPDDDIVLRGILEADPNGVLIVIEGRVPEWTIRLKSRWEKTLG-RVSSQVLFIPAIAHTEYLSLLHECDVMLDPLHFGGGNSSYEALAMGTPVVTLPSA-----FLRGRITSALYRKMKMMDCVVHSQDEYISLATRLGTDREFRKSVSQKIDAASRVLFSDPA 925          
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Match: A0A517PGN0_9PLAN (Protein O-GlcNAc transferase n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517PGN0_9PLAN)

HSP 1 Score: 129 bits (323), Expect = 4.270e-30
Identity = 93/273 (34.07%), Postives = 140/273 (51.28%), Query Frame = 1
Query:    4 SLQLDCLLYLAPGASLFQHLLSIGRLAPLQLSFGLGHPITSGHEGIDFFISSSIFEIPREATEG-GEEANRRG*NGRFIGRNIIPEG-------DIVGGIHLYHCLQDAKKFHPAFDVAMHGVLDADPWARLLL--PSTAKMHS---ERWNRTLGPGAMNRLVFLFEMEHPTMMEVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSSLGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETAT 783
            SL+LD L Y   G   F   L+  R AP+Q     GHPIT+G + ID+FISS + E P +A E   E+  R      +  R  +PE         +    H+Y C Q   K HP FD  + G+L  DP AR+++    T+K       R+ RT  P  ++R++FL  M  P  + ++   DV+L P  +G G TS++++A+G PVVTLP         +     +GLED +V++   +YI  A R+  D  +RD +  +IL    L+F + +T
Sbjct:  642 SLELDVLFYADIGMDPFIFSLATTRHAPVQC-VTWGHPITTGLKTIDYFISSELIE-PEDADEHYTEQLVRLKSLPSYYYRPGLPEEIKPRAAFGLSDDDHVYACPQTLFKIHPEFDQVLAGILRKDPQARIVMIRDQTSKWKDLLVARFERTF-PDVVDRILFLRGMSTPDFLNLIYISDVLLDPLHFGGGNTSYQSMAIGTPVVTLPARYMRGRGMLAVYKKMGLEDCIVSSIE-EYIELACRIGCDEAFRDQLRLKILAKSHLIFEDIST 910          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17641.4614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00056975751.130e-3333.82hypothetical protein n=1 Tax=Methylomicrobium lacu... [more]
A0A1F3AU20_9PROT5.440e-3333.83Glyco_transf_41 domain-containing protein n=1 Tax=... [more]
A0A3L7RUW9_9BACT1.730e-3232.10Uncharacterized protein (Fragment) n=1 Tax=Plancto... [more]
A0A847H0R7_9BACT7.430e-3234.67TIGR03032 family protein n=1 Tax=Candidatus Anammo... [more]
A0A6I6ACV5_9PLAN1.460e-3132.10Tetratricopeptide repeat protein n=1 Tax=Gimesia b... [more]
A0A1W9MSC4_9DELT1.810e-3133.83Glyco_transf_41 domain-containing protein (Fragmen... [more]
UPI001EF492FF5.130e-3133.33tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
A0A350K8L9_9PLAN1.470e-3033.70Glyco_transf_41 domain-containing protein (Fragmen... [more]
A0A3L7P3B7_9BACT1.570e-3031.41TIGR03032 family protein n=1 Tax=Planctomycetes ba... [more]
A0A517PGN0_9PLAN4.270e-3034.07Protein O-GlcNAc transferase n=5 Tax=Gimesia TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17641contigH-elongata_contig17641:3633..5275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue5.8e-18
Seed eggNOG ortholog44056.XP_009032315.1
EggNOG OGs2CYFD@1,2S40I@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size783
Cds size447
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17641.4614.1prot_H-elongata_contig17641.4614.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17641 3633..4429 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.22252-CDS-H-elongata_contig17641:3632..37881622930021.22252-CDS-H-elongata_contig17641:3632..3788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17641 3633..3788 -
1691679249.3192883-CDS-H-elongata_contig17641:3632..37881691679249.3192883-CDS-H-elongata_contig17641:3632..3788Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17641 3633..3788 -
1622930021.2399535-CDS-H-elongata_contig17641:4138..44291622930021.2399535-CDS-H-elongata_contig17641:4138..4429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17641 4139..4429 -
1691679249.347258-CDS-H-elongata_contig17641:4138..44291691679249.347258-CDS-H-elongata_contig17641:4138..4429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17641 4139..4429 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930021.2528875-UTR-H-elongata_contig17641:4429..45451622930021.2528875-UTR-H-elongata_contig17641:4429..4545Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17641 4430..4545 -
1691679249.3573706-UTR-H-elongata_contig17641:4429..45451691679249.3573706-UTR-H-elongata_contig17641:4429..4545Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17641 4430..4545 -
1622930021.2663147-UTR-H-elongata_contig17641:5055..52751622930021.2663147-UTR-H-elongata_contig17641:5055..5275Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17641 5056..5275 -
1691679249.3673239-UTR-H-elongata_contig17641:5055..52751691679249.3673239-UTR-H-elongata_contig17641:5055..5275Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17641 5056..5275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17641.4614.1

>prot_H-elongata_contig17641.4614.1 ID=prot_H-elongata_contig17641.4614.1|Name=mRNA_H-elongata_contig17641.4614.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
MHGVLDADPWARLLLPSTAKMHSERWNRTLGPGAMNRLVFLFEMEHPTMM
EVVAACDVMLAPWGWGAGITSFEALAVGLPVVTLPTEESVLHFTMGQVSS
LGLEDELVANNPLDYISKAVRLANDRPYRDVVSARILQSRELLFGETAT
back to top

mRNA from alignment at H-elongata_contig17641:3633..5275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17641.4614.1 ID=mRNA_H-elongata_contig17641.4614.1|Name=mRNA_H-elongata_contig17641.4614.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1643bp|location=Sequence derived from alignment at H-elongata_contig17641:3633..5275- (Himanthalia elongata Himel1 dioecious)
TCGTCGCTTCAGCTGGACTGCTTGCTCTACCTCGCTCCGGGCGCTTCGCT CTTTCAGCACCTGCTGTCCATCGGACGCCTTGCACCTTTGCAGCTCTCTT TCGGGCTCGGTCACCCTATCACCTCCGGCCACGAAGGGATCGACTTTTTT ATATCTTCTAGTATCTTCGAAATACCGCGAGAAGCAACGGAGGGCGGCGA AGAGGCTAACCGCCGAGGGTGTTCCCAGGTGTTGGGAAGGGAGGACGGTA AATGGACACCTCTCTCGTCCAAAACCGGTGCAGCAGGGTCAGCGGGCGCA CTATTCAAGAACCCCACTAATGGAACCGACACTAGTGAATTAACCGTGCA TAATTTTGGCGGACATCAGGGTACCTCGGGGGTGTTGTGGGATTGCCTTA CGGCTGCCGGCTCACGCAGCCCCCTTGCGTATTCAGAGCAAGTGGTTCTG TTCGATTCCTTCACTGGGGTCTTCCAGCCTCCTCGGGATCCAGATCCTGC CCGCGTGCGGTTGATCCGAGAACGAATCGTGAAGCTGGCGACTGGCGGCG ACCTATCGGAGCCAGAAGCCGCCACCCTGGGAAGTGTCGCGGGAAAGCCA ACCGAGGAAGCACCATCCAACGGCGTACGTGATACCAGTACAAGCGACAA AGCAACGTCGCGCTCGAGACATCCTGGTCAATACATCTCCGCACGTCATT TGGGCGGGGAGAAGAAGGGGGACGAGGAAGAGAACGGTAGATTTATCGGC CGGAACATCATCCCCGAGGGCGACATCGTTGGCGGCATCCACTTGTATCA CTGCCTTCAGGATGCCAAGAAATTCCACCCGGCTTTCGACGTGGCAATGC ACGGCGTTCTCGATGCGGATCCCTGGGCGAGGTTGTTGCTGCCTTCGACA GCCAAGATGCACTCCGAGCGATGGAACCGCACCCTCGGGCCGGGAGCGAT GAACAGGTTGGTTTTCCTCTTCGAAATGGAACACCCTACTATGATGGAAG TTGTGGCCGCCTGTGACGTCATGCTAGCGCCGTGGGGCTGGGGGGCGGGC ATCACGTCGTTCGAGGCACTGGCGGTGGGACTGCCAGTAGTGACGTTGCC AACCGAGGAATCCGTATTACATTTTACAATGGGCCAGGTGAGGATTATCG CGCCTCTTCCCTCGAGAACGTCTCGCGGCGAACGGTGGAGTAGGGCAGAA CGGGTGGGTTGTGGTGCAGCAATCCGCGAGAGCAGGACCTATATTCGGGT CTGTAGTCCCCTCGTACTATATGTGGATTTTACTCTTCCTTGGAATTGTA TATTCCCGTTTGTCTGTCCATTATTTTACACGGCCTTGCTCGGAGAGACA GACGCGGATATCACCCTCTGGTTGGCAGCGAAGCTCCTGCGCAGTCACAA AGTGGTCATTTTCCTCGTTCCTAACACACATAAACATCACACAACCTCAC AAACACGTACCGTACTAACTCACGCCTACTTGCTCAGGTATCATCACTCG GCCTAGAAGACGAGCTCGTGGCGAACAACCCTCTGGACTACATCTCCAAG GCCGTGCGCCTCGCCAACGACCGCCCCTACAGGGACGTAGTGTCGGCTCG AATACTTCAGAGTCGCGAGCTTCTGTTCGGGGAGACTGCGACG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17641:3633..5275-

>mRNA_H-elongata_contig17641.4614.1 ID=mRNA_H-elongata_contig17641.4614.1|Name=mRNA_H-elongata_contig17641.4614.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig17641:3633..5275- (Himanthalia elongata Himel1 dioecious)
ATGCACGGCGTTCTCGATGCGGATCCCTGGGCGAGGTTGTTGCTGCCTTC
GACAGCCAAGATGCACTCCGAGCGATGGAACCGCACCCTCGGGCCGGGAG
CGATGAACAGGTTGGTTTTCCTCTTCGAAATGGAACACCCTACTATGATG
GAAGTTGTGGCCGCCTGTGACGTCATGCTAGCGCCGTGGGGCTGGGGGGC
GGGCATCACGTCGTTCGAGGCACTGGCGGTGGGACTGCCAGTAGTGACGT
TGCCAACCGAGGAATCCGTATTACATTTTACAATGGGCCAGATGCACGGC
GTTCTCGATGCGGATCCCTGGGCGAGGTTGTTGCTGCCTTCGACAGCCAA
GATGCACTCCGAGCGATGGAACCGCACCCTCGGGCCGGGAGCGATGAACA
GGTTGGTTTTCCTCTTCGAAATGGAACACCCTACTATGATGGAAGTTGTG
GCCGCCTGTGACGTCATGCTAGCGCCGTGGGGCTGGGGGGCGGGCATCAC
GTCGTTCGAGGCACTGGCGGTGGGACTGCCAGTAGTGACGTTGCCAACCG
AGGAATCCGTATTACATTTTACAATGGGCCAGGTATCATCACTCGGCCTA
GAAGACGAGCTCGTGGCGAACAACCCTCTGGACTACATCTCCAAGGCCGT
GCGCCTCGCCAACGACCGCCCCTACAGGGACGTAGTGTCGGCTCGAATAC
TTCAGAGTCGCGAGCTTCTGTTCGGGGAGACTGCGACGGTATCATCACTC
GGCCTAGAAGACGAGCTCGTGGCGAACAACCCTCTGGACTACATCTCCAA
GGCCGTGCGCCTCGCCAACGACCGCCCCTACAGGGACGTAGTGTCGGCTC
GAATACTTCAGAGTCGCGAGCTTCTGTTCGGGGAGACTGCGACG
back to top