mRNA_H-elongata_contig105573.460.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105573.460.1
Unique NamemRNA_H-elongata_contig105573.460.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105573.460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105573contigH-elongata_contig105573:1096..2222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1004
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105573.460.1prot_H-elongata_contig105573.460.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105573 1185..2168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.1455164-UTR-H-elongata_contig105573:1095..11841622929588.1455164-UTR-H-elongata_contig105573:1095..1184Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105573 1096..1184 -
1691679081.5379777-UTR-H-elongata_contig105573:1095..11841691679081.5379777-UTR-H-elongata_contig105573:1095..1184Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105573 1096..1184 -
1622929588.233244-UTR-H-elongata_contig105573:2168..22221622929588.233244-UTR-H-elongata_contig105573:2168..2222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105573 2169..2222 -
1691679081.5772169-UTR-H-elongata_contig105573:2168..22221691679081.5772169-UTR-H-elongata_contig105573:2168..2222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig105573 2169..2222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929588.1971724-CDS-H-elongata_contig105573:1184..15751622929588.1971724-CDS-H-elongata_contig105573:1184..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105573 1185..1575 -
1691679081.5471616-CDS-H-elongata_contig105573:1184..15751691679081.5471616-CDS-H-elongata_contig105573:1184..1575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105573 1185..1575 -
1622929588.2118263-CDS-H-elongata_contig105573:1599..18861622929588.2118263-CDS-H-elongata_contig105573:1599..1886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105573 1600..1886 -
1691679081.5565188-CDS-H-elongata_contig105573:1599..18861691679081.5565188-CDS-H-elongata_contig105573:1599..1886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105573 1600..1886 -
1622929588.222437-CDS-H-elongata_contig105573:1985..21681622929588.222437-CDS-H-elongata_contig105573:1985..2168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105573 1986..2168 -
1691679081.5667043-CDS-H-elongata_contig105573:1985..21681691679081.5667043-CDS-H-elongata_contig105573:1985..2168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105573 1986..2168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105573.460.1

>prot_H-elongata_contig105573.460.1 ID=prot_H-elongata_contig105573.460.1|Name=mRNA_H-elongata_contig105573.460.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp
MINVTKRKNCAGDGCSKQPNYGEAGSTKREYCAKHALKGMIYVKKKMCAH
DGCSKQPSYGKQPTYGKAGSTKREYCVEHALEGMVYFTSLTCADVSCSKE
PIYGNAESATLGYCVEHALDGMVNVSKNMCAGDRCFKTASYAYAGSTKGD
YCTEHANNMCAGDTCFKVPNYDKAGVTKRKYCAEHALKGIVNVSITSFAG
DGSSKLASYGKTESKKRRYSAKHAMGGMVSTVSYNSPKSKKRVSKISSSP
VSVSKRCKTDNHVGAPFSDTALNIVLKSELSVTKSK*
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mRNA from alignment at H-elongata_contig105573:1096..2222-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105573.460.1 ID=mRNA_H-elongata_contig105573.460.1|Name=mRNA_H-elongata_contig105573.460.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1127bp|location=Sequence derived from alignment at H-elongata_contig105573:1096..2222- (Himanthalia elongata Himel1 dioecious)
GGAAAGGCTGGCAGCACGAAACGGGAGTACTGCGCTAAGCATGCCTTGGA
GAAGATGATTAACGTAACAAAGAGAAAAAATTGTGCCGGTGATGGATGTT
CTAAGCAACCCAACTACGGGGAGGCTGGCAGCACGAAACGCGAGTACTGC
GCTAAGCATGCCTTGAAGGGGATGATTTACGTTAAGAAGAAAATGTGTGC
CCATGATGGATGTTCTAAGCAACCCAGCTACGGAAAGGCTGGCAGCACGA
AACGGGAGTACTGCGCTAAGCATGCCTTGGAGAAGATGATTAACGTAACA
AAGAGAAAAATGTGTGCCGGTGATGGATGTTCTAAGCAACCCACCTACGG
AAAGGCTGGCAGCACGAAAAGGGAGTACTGCGTTGAGCATGCTTTGGAGG
GGATGGTCTATTTTACGAGCCTAACGTGTGCCGACGTTAGTTGCTCTAAG
GAACCAATTTACGGTAATGCTGAAAGCGCGACACTTGGATACTGCGTTGA
GCATGCCTTGGATGGGATGGTCAATGTTTCGAAAAACATGTGTGCCGGCG
ATCGATGTTTTAAAACTGCAAGCTACGCATATGCCGGAAGCACGAAGGGA
GACTACTGCACTGAGCATGCCAAAGAGAGTATGGTCAGTGTTTTTAACAA
TATGTGCGCAGGAGATACATGCTTTAAGGTACCAAATTACGATAAGGCTG
GCGTTACGAAACGGAAGTATTGCGCTGAGCATGCTTTAAAAGGAATTGTC
AATGTTTCGATCACTAGTTTTGCCGGTGATGGAAGTTCTAAGCTTGCGAG
CTACGGAAAAACCGAGAGCAAGAAGCGGCGTTACTCCGCAAAACATGCTA
TGGGAGGGATGGTGTCTACCGTTTCGTACAACAGTCCAAAATCAAAGAAG
CGGGTCTCTAAGATCTCTTCATCGCCCGTATCCGTGTCGAAAAGATGTAA
AACCGATAATCATGTTGGAGCCCCCTTTTCCGATACTGCATTAAATATTG
TTTTGAAGTCAGAGTTATCAGTGACTAAATCTAAGTAGGTATGCGTTGCA
AAGGATTTAGTTGGCGGTCTACTGGCGAACAGGAGCGGTGGCATTGCGCT
CCGTCGTTTTCATGTCTTAATATATTA
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Coding sequence (CDS) from alignment at H-elongata_contig105573:1096..2222-

>mRNA_H-elongata_contig105573.460.1 ID=mRNA_H-elongata_contig105573.460.1|Name=mRNA_H-elongata_contig105573.460.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at H-elongata_contig105573:1096..2222- (Himanthalia elongata Himel1 dioecious)
ATGATTAACGTAACAAAGAGAAAAAATTGTGCCGGTGATGGATGTTCTAA
GCAACCCAACTACGGGGAGGCTGGCAGCACGAAACGCGAGTACTGCGCTA
AGCATGCCTTGAAGGGGATGATTTACGTTAAGAAGAAAATGTGTGCCCAT
GATGGATGTTCTAAGCAACCCAGCTACGGAAAGATGATTAACGTAACAAA
GAGAAAAAATTGTGCCGGTGATGGATGTTCTAAGCAACCCAACTACGGGG
AGGCTGGCAGCACGAAACGCGAGTACTGCGCTAAGCATGCCTTGAAGGGG
ATGATTTACGTTAAGAAGAAAATGTGTGCCCATGATGGATGTTCTAAGCA
ACCCAGCTACGGAAAGCAACCCACCTACGGAAAGGCTGGCAGCACGAAAA
GGGAGTACTGCGTTGAGCATGCTTTGGAGGGGATGGTCTATTTTACGAGC
CTAACGTGTGCCGACGTTAGTTGCTCTAAGGAACCAATTTACGGTAATGC
TGAAAGCGCGACACTTGGATACTGCGTTGAGCATGCCTTGGATGGGATGG
TCAATGTTTCGAAAAACATGTGTGCCGGCGATCGATGTTTTAAAACTGCA
AGCTACGCATATGCCGGAAGCACGAAGGGAGACTACTGCACTGAGCATGC
CAACAACCCACCTACGGAAAGGCTGGCAGCACGAAAAGGGAGTACTGCGT
TGAGCATGCTTTGGAGGGGATGGTCTATTTTACGAGCCTAACGTGTGCCG
ACGTTAGTTGCTCTAAGGAACCAATTTACGGTAATGCTGAAAGCGCGACA
CTTGGATACTGCGTTGAGCATGCCTTGGATGGGATGGTCAATGTTTCGAA
AAACATGTGTGCCGGCGATCGATGTTTTAAAACTGCAAGCTACGCATATG
CCGGAAGCACGAAGGGAGACTACTGCACTGAGCATGCCAACAATATGTGC
GCAGGAGATACATGCTTTAAGGTACCAAATTACGATAAGGCTGGCGTTAC
GAAACGGAAGTATTGCGCTGAGCATGCTTTAAAAGGAATTGTCAATGTTT
CGATCACTAGTTTTGCCGGTGATGGAAGTTCTAAGCTTGCGAGCTACGGA
AAAACCGAGAGCAAGAAGCGGCGTTACTCCGCAAAACATGCTATGGGAGG
GATGGTGTCTACCGTTTCGTACAACAGTCCAAAATCAAAGAAGCGGGTCT
CTAAGATCTCTTCATCGCCCGTATCCGTGTCGAAAAGATGTAAAACCGAT
AATCATGTTGGAGCCCCCTTTTCCGATACTGCATTAAATATTGTTTTGAA
GTCAGAGTTATCAGTGACTAAATCTAAGTAGCAATATGTGCGCAGGAGAT
ACATGCTTTAAGGTACCAAATTACGATAAGGCTGGCGTTACGAAACGGAA
GTATTGCGCTGAGCATGCTTTAAAAGGAATTGTCAATGTTTCGATCACTA
GTTTTGCCGGTGATGGAAGTTCTAAGCTTGCGAGCTACGGAAAAACCGAG
AGCAAGAAGCGGCGTTACTCCGCAAAACATGCTATGGGAGGGATGGTGTC
TACCGTTTCGTACAACAGTCCAAAATCAAAGAAGCGGGTCTCTAAGATCT
CTTCATCGCCCGTATCCGTGTCGAAAAGATGTAAAACCGATAATCATGTT
GGAGCCCCCTTTTCCGATACTGCATTAAATATTGTTTTGAAGTCAGAGTT
ATCAGTGACTAAATCTAAGTAG
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