mRNA_H-elongata_contig17601.4595.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17601.4595.1
Unique NamemRNA_H-elongata_contig17601.4595.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: D7FQ66_ECTSI (Putative oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ66_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 5.940e-87
Identity = 154/227 (67.84%), Postives = 180/227 (79.30%), Query Frame = 1
Query:    1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVGVEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASA-EAMLGG-------NRGWSVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFLTPLEKVSK 657
            RNVTAGHEAA DI+R++P+A VECH LDLASFSSVRSF + AVG   VSA+IHNAGVMA PY TTVDGHELTFQVNHL+ F LT+LLLPNLRRA++D+G   LSRVV+V+SGAHRWAS   +GAAGGLA GAGA+  E   GG       +RGW   +W++YAGSKLCNVLYA+ELT+RYGGE SGVVGV+VRPGTV T I RHS  LR +F +  PFLT +EK  +
Sbjct:   60 RNVTAGHEAANDILRQHPDACVECHPLDLASFSSVRSFAKSAVGGRAVSAVIHNAGVMAVPYRTTVDGHELTFQVNHLAQFFLTELLLPNLRRAYRDTG--ELSRVVIVASGAHRWASTNNQGAAGGLARGAGAAQHEVGAGGISYATEMSRGW--GKWQAYAGSKLCNVLYAAELTRRYGGEDSGVVGVAVRPGTVRTAIARHSPLLRFIFTLVQPFLTSVEKAGE 282          
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A835YS02_9STRA (Putative oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS02_9STRA)

HSP 1 Score: 167 bits (422), Expect = 4.000e-43
Identity = 101/239 (42.26%), Postives = 139/239 (58.16%), Query Frame = 1
Query:    1 RNVTAGHEAAADIIRENPNARVECH-----------------HLDLASFSSVRSFPERAVGVEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGWSVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFLTPLEKVSKPRA 666
            R+V AG     +I+  +P A +EC                   LDLA F+SVR+F E+A+G  PVS+++HNAGVM  P + T DGH+LT QVNHL+PFLLT+LLLPN++ A K+ G    SRVV+VSSG HRW                G+     L  ++  +   W+ YA +KL N+L+ SEL +R G    G+  V+VRPG   T ITRHS  LR+L+A+  P LTP+++  +  A
Sbjct:   65 RDVKAGAAVVEEILEVHPGASLECQITQHVNTNCCAPGRSPQKLDLADFASVRTFAEQAIGDRPVSSIVHNAGVMGAPRQLTKDGHDLTIQVNHLAPFLLTNLLLPNMKAAAKELG--RSSRVVVVSSGTHRW----------------GSFEPDHLYNDK--TCGPWQMYANTKLYNILFVSELHRRQGT--LGITAVAVRPGLCRTAITRHSKLLRVLYALLSPILTPVDQAGQSLA 281          
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A1Y1HWQ4_KLENI (Short chain dehydrogenase/reductase protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWQ4_KLENI)

HSP 1 Score: 129 bits (323), Expect = 1.410e-29
Identity = 86/197 (43.65%), Postives = 113/197 (57.36%), Query Frame = 1
Query:    1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVGVE-PVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGWSVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRH 588
            RN  AG    ADI++ +P A+V+   LDL+S  SVRSF       + P++ L++NAGVM  P+  T DGHE+ F  NHL  FLLTDLLL NL++  K +G  + SRVVL+SS AH                G G   +  L    G+S   + +Y  SKL NVL+A+EL KR   EG+ V   SV PG +ATN+ RH
Sbjct:   66 RNTEAGQATKADILKGSPKAQVDVMSLDLSSLDSVRSFASEFEKTKLPLNILVNNAGVMMCPFSKTKDGHEMQFGTNHLGHFLLTDLLLDNLKQTAKKTG--TESRVVLLSSRAHH------------RTYGEGIRFD-KLNSEEGYSP--FSAYGQSKLANVLHANELAKRLKAEGADVTVNSVHPGVIATNLGRH 245          
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A834F7B5_ORYME (Retinol dehydrogenase 11 n=1 Tax=Oryzias melastigma TaxID=30732 RepID=A0A834F7B5_ORYME)

HSP 1 Score: 118 bits (296), Expect = 1.420e-26
Identity = 91/227 (40.09%), Postives = 117/227 (51.54%), Query Frame = 1
Query:    1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVG-VEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGW----------SVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFL-TPLE 645
            R+   G EAAA I  E P A+VE   LDLA   S+R+F +  +  V  +  LI+NAGVM  PY  TVDG E+   VNHL  FLLT LL+  L+R+       + +R+V+VSS AH                            N GW          S N   +Y  SKL NVL+A EL +R   +GS V   SV PGTV +++TRHST + +LF+V   FL TP E
Sbjct:    4 RDTEKGEEAAASIRAEYPKAQVEVRELDLADTCSIRAFAQNFLREVHQLHILINNAGVMMCPYTKTVDGFEMHIGVNHLGHFLLTYLLVGLLKRS-------APARIVVVSSLAH----------------------------NFGWIRFHDLHSQGSYNSGLAYCQSKLANVLFARELARRL--KGSDVTVNSVHPGTVNSDLTRHSTIMTILFSVFSVFLKTPRE 193          
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A4Z2HEV2_9TELE (Retinol dehydrogenase 12 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2HEV2_9TELE)

HSP 1 Score: 120 bits (301), Expect = 1.790e-26
Identity = 89/227 (39.21%), Postives = 116/227 (51.10%), Query Frame = 1
Query:    1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVG-VEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGW----------SVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFL-TPLE 645
            R+V  G EAA  I   +P ARVE   LDLA   S+R+F ++ +G V  +  LIHNAGVM  PY  T+DG E+   VNHL  FLLT LL+  ++R+       + +RVV+VSS AH                            N GW          S N   +Y  SKL NVL+  EL +R   +G+ V   SV PGTV +++TRHST + + F V   FL TP E
Sbjct:   98 RDVDKGEEAADGIRAAHPEARVEVRELDLADTCSIRAFAQKFLGEVNHLHILIHNAGVMMCPYTKTIDGFEMHIGVNHLGHFLLTSLLIGLMKRS-------APARVVVVSSLAH----------------------------NFGWIRFHDLHSQGSYNSGLAYCQSKLANVLFTRELARRL--KGTDVTVNSVHPGTVNSDLTRHSTLMTIFFTVFSTFLKTPRE 287          
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A3B5QZ01_XIPMA (Uncharacterized protein n=1 Tax=Xiphophorus maculatus TaxID=8083 RepID=A0A3B5QZ01_XIPMA)

HSP 1 Score: 119 bits (298), Expect = 3.220e-26
Identity = 92/227 (40.53%), Postives = 117/227 (51.54%), Query Frame = 1
Query:    1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVG-VEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGW----------SVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFL-TPLE 645
            RNV  G EAAA I      A+VE   LDLA   S+R+F ++ +  V  +  LI+NAGVM  PY  TVDG E+   VNHL  FLLT LL+  LRR+       + +RV++VSS AH                            N GW          S N   +Y  SKL NVL+A EL +R   +G+ V   SV PGTV +++TRHST + +LF V   FL TPLE
Sbjct:   70 RNVEKGEEAAASIRAAYSEAKVEVRELDLADTCSIRAFAQKFLREVNHLHILINNAGVMMCPYTKTVDGFEMHIGVNHLGHFLLTYLLIGLLRRS-------APARVLVVSSLAH----------------------------NFGWIRFHDLHSQGSYNSGLAYCQSKLANVLFARELARRL--KGTNVTVNSVHPGTVNSDLTRHSTLMMILFTVFSVFLKTPLE 259          
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A166JAP2_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166JAP2_DAUCS)

HSP 1 Score: 119 bits (297), Expect = 4.310e-26
Identity = 76/212 (35.85%), Postives = 117/212 (55.19%), Query Frame = 1
Query:    1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVGVE-PVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGWSVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFL 633
            RNV AG +   +I++++P ++++   +DL S +S+R F    +    P++ LI+NAG+MAPP+  + D  E  F VNHL PFLLT+LLL  +++   + G     R+V V+S  HR+                G   + +   N   S N   +Y  SKLCN+L+  ELT+R   EG+ V   S+ PG +ATNI ++S+ L  +F  A  FL
Sbjct:   61 RNVKAGEKVKGEILQKHPGSKIDVMEIDLNSQASIRKFAADFIATGLPLNILINNAGIMAPPFTLSKDNIEQQFAVNHLGPFLLTNLLLDTMKKTANECG--KEGRIVNVASELHRYGYK------------EGIRFDKI---NDKASYNPNSAYGQSKLCNILHCVELTRRLKEEGANVTANSLHPGVIATNIAQNSSLLGCIFGCAQIFL 255          
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A161Y1F8_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161Y1F8_DAUCS)

HSP 1 Score: 119 bits (297), Expect = 4.310e-26
Identity = 75/214 (35.05%), Postives = 111/214 (51.87%), Query Frame = 1
Query:    1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVGVE-PVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGWSVNRWRSYAG------SKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVA 621
            RNV AG++   DI++  PNA+++   +DL S +S+R F    +    P++ L++NAG+MAPP+  + D  E  F VNHL PFLLT+LLL  +++    S      R++ VSS  HR+                         G R   +N   SY G      SKLCN+L+ +EL +R  GEG  +   S+ PG +ATN+  H T L  +  +A
Sbjct:   61 RNVKAGNKVREDILKNIPNAKIDVMEIDLNSMASIRKFASEYISSGLPLNILVNNAGIMAPPFTLSKDNIEQQFAVNHLGPFLLTNLLLDTMKKTAATSQ--KEGRIINVSSELHRYG---------------------YKEGIRFDKINDESSYDGNLAYKQSKLCNLLHTNELARRLKGEGVNITANSLHPGVIATNLISHMTLLSWVSTIA 251          
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A164TNQ8_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164TNQ8_DAUCS)

HSP 1 Score: 119 bits (297), Expect = 4.310e-26
Identity = 75/204 (36.76%), Postives = 113/204 (55.39%), Query Frame = 1
Query:    1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVGV-EPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAG---ASAEAMLGGNRGWSVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTAL 600
            RNV AG +   DI+++ PNA+++   +DL S  S+R F +  +    P++ L++NAG+MAPP+  + D  E  F VNHL PFLLT+LLL  +++  +DS      R++ +SS  H +          G   G      + EA   GN         +Y+ SKLCN+L+ +ELTKR   EG  +   S+ PG +ATN+  HS+ L
Sbjct:   61 RNVNAGKKVKDDILQKIPNAKIDVMEIDLNSQESIRKFAKEYISCGHPLNILVNNAGIMAPPFTLSKDNIEQQFAVNHLGPFLLTNLLLDTMKKTAEDSQ--KEGRIINISSDLHFY----------GYKEGIRFDKLNDEASYNGNT--------AYSQSKLCNILHTNELTKRLKEEGVNITANSLHPGVIATNLLSHSSLL 244          
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Match: A0A3Q0SPB2_AMPCI (Retinol dehydrogenase 12 n=1 Tax=Amphilophus citrinellus TaxID=61819 RepID=A0A3Q0SPB2_AMPCI)

HSP 1 Score: 118 bits (296), Expect = 5.440e-26
Identity = 90/227 (39.65%), Postives = 116/227 (51.10%), Query Frame = 1
Query:    1 RNVTAGHEAAADIIRENPNARVECHHLDLASFSSVRSFPERAVG-VEPVSALIHNAGVMAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVVLVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGW----------SVNRWRSYAGSKLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVAFPFL-TPLE 645
            R+V  G EAAA I   NP A+VE   LDLA   S+R+F ++ +  V  +  LI+NAGVM  PY  TVDG E+   VNHL  FLLT LL+  L+R+       + +R+V+VSS AH                            N GW          S N   +Y  SKL NVL+  EL  R   +G+ V   SV PGTV +++TRHST + +LF V   FL TP E
Sbjct:   65 RDVEKGEEAAASIRAANPKAQVEVRELDLADTCSIRAFAQKFLREVNQLHILINNAGVMMCPYTKTVDGFEMHIGVNHLGHFLLTSLLIGLLKRS-------APARIVVVSSLAH----------------------------NFGWIRFHDLHSQGSYNSGLAYCQSKLANVLFTRELACRL--KGTNVTVNSVHPGTVNSDLTRHSTLMTILFTVFSMFLKTPRE 254          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17601.4595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ66_ECTSI5.940e-8767.84Putative oxidoreductase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YS02_9STRA4.000e-4342.26Putative oxidoreductase n=1 Tax=Tribonema minus Ta... [more]
A0A1Y1HWQ4_KLENI1.410e-2943.65Short chain dehydrogenase/reductase protein n=1 Ta... [more]
A0A834F7B5_ORYME1.420e-2640.09Retinol dehydrogenase 11 n=1 Tax=Oryzias melastigm... [more]
A0A4Z2HEV2_9TELE1.790e-2639.21Retinol dehydrogenase 12 n=1 Tax=Liparis tanakae T... [more]
A0A3B5QZ01_XIPMA3.220e-2640.53Uncharacterized protein n=1 Tax=Xiphophorus macula... [more]
A0A166JAP2_DAUCS4.310e-2635.85Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A161Y1F8_DAUCS4.310e-2635.05Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A164TNQ8_DAUCS4.310e-2636.76Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
A0A3Q0SPB2_AMPCI5.440e-2639.65Retinol dehydrogenase 12 n=1 Tax=Amphilophus citri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17601contigH-elongata_contig17601:515..3016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.4
Seed ortholog evalue4e-49
Seed eggNOG ortholog2880.D7FQ66
KEGG koko:K19329
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionputative oxidoreductase
Ec32 orthologEc-01_007260.1
Exons4
Model size1674
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17601.4595.1prot_H-elongata_contig17601.4595.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17601 686..2131 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.7466593-UTR-H-elongata_contig17601:514..6851622930019.7466593-UTR-H-elongata_contig17601:514..685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17601 515..685 +
1691679248.6250522-UTR-H-elongata_contig17601:514..6851691679248.6250522-UTR-H-elongata_contig17601:514..685Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17601 515..685 +
1622930019.8040774-UTR-H-elongata_contig17601:2131..30161622930019.8040774-UTR-H-elongata_contig17601:2131..3016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17601 2132..3016 +
1691679248.6781383-UTR-H-elongata_contig17601:2131..30161691679248.6781383-UTR-H-elongata_contig17601:2131..3016Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17601 2132..3016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930019.7622848-CDS-H-elongata_contig17601:685..7361622930019.7622848-CDS-H-elongata_contig17601:685..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 686..736 +
1691679248.6391723-CDS-H-elongata_contig17601:685..7361691679248.6391723-CDS-H-elongata_contig17601:685..736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 686..736 +
1622930019.772965-CDS-H-elongata_contig17601:970..10371622930019.772965-CDS-H-elongata_contig17601:970..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 971..1037 +
1691679248.6486998-CDS-H-elongata_contig17601:970..10371691679248.6486998-CDS-H-elongata_contig17601:970..1037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 971..1037 +
1622930019.7826416-CDS-H-elongata_contig17601:1599..19761622930019.7826416-CDS-H-elongata_contig17601:1599..1976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 1600..1976 +
1691679248.658724-CDS-H-elongata_contig17601:1599..19761691679248.658724-CDS-H-elongata_contig17601:1599..1976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 1600..1976 +
1622930019.79248-CDS-H-elongata_contig17601:2008..21311622930019.79248-CDS-H-elongata_contig17601:2008..2131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 2009..2131 +
1691679248.6686678-CDS-H-elongata_contig17601:2008..21311691679248.6686678-CDS-H-elongata_contig17601:2008..2131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17601 2009..2131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17601.4595.1

>prot_H-elongata_contig17601.4595.1 ID=prot_H-elongata_contig17601.4595.1|Name=mRNA_H-elongata_contig17601.4595.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp
MAPPYETTVDGHELTFQVNHLSPFLLTDLLLPNLRRAHKDSGGLSLSRVV
LVSSGAHRWASAGGRGAAGGLASGAGASAEAMLGGNRGWSVNRWRSYAGS
KLCNVLYASELTKRYGGEGSGVVGVSVRPGTVATNITRHSTALRLLFAVA
FPFLTPLEKVSKPRAEPSNDKCEGKLLKLPRFMRERGKLVHFGSSGAKTD
PCPLR*
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mRNA from alignment at H-elongata_contig17601:515..3016+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17601.4595.1 ID=mRNA_H-elongata_contig17601.4595.1|Name=mRNA_H-elongata_contig17601.4595.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2502bp|location=Sequence derived from alignment at H-elongata_contig17601:515..3016+ (Himanthalia elongata Himel1 dioecious)
AGGAACGTCACCGCCGGCCACGAGGCCGCTGCTGACATCATCCGGGAGAA CCCAAACGCTCGCGTCGAATGCCACCATCTTGATCTGGCTTCCTTCAGCT CGGTGCGATCGTTTCCAGAGAGGGCTGTGGGCGTCGAGCCCGTGTCTGCG CTTATCCACAACGCCGGGGTTATGGCGCCGCCCTATGAGACTACCGTAGA CGGTCATGAGCTTACCTTCCAGGTGCGAACGAGTGTCTTCCGCCACTTTC GTGTAGAAAAGGTTAATCTCGACCACGCCGCCTGGGGTTTGAAGCTCACA TGAATCTAGAGCTAGTTCTACGGCGGGTGACATGTCTCTTTTGACAATCT CCATCGAGAAGGATATATGATTCAATTGTGTGGTGTCTGTACGCTGTCTG CCCCGCTACGCGCTACCCGTTGCGATGCGATCGGGCTGCCACACGCCGGC ATGCAGGTGAACCATCTGTCGCCCTTCTTGTTGACGGATCTCTTGCTCCC GAACTTGCGGAGAGCTCACAAAGGTGGGTGACCGTTCACAGCTTGCCTTA AGAGCGTCTCACGGTATCCGACGATCTGAGCGACGTTGGTAACACTGCTG CTGTGCTAGGTTCGCACCGCAAAAAAACTTGTATTCTTGAAGTAAGTAAC TTACCACCCCACATTTGTTATGTACTGTATATATTATATATACCACGCCA GAACCGCGCTACTACCGGGAGGCATTGATGAGAATAATGCCCCCCCCTCC CCCCCTCCCCCGCGAACTGCGAACTGGCATTACAAAGAACACAAGACGCC GTGGATCCTAACCGTCGGTCTCGCCAAGATCGCAAAGACGATTAGATGGT GCATGCTGCTTTCCTCAAAGGCAGTAGTTTCCATCATCAAACACCGCGTG GTAGTCGCGCTTTCAAGAGCGATCGAGATCTCACCCTCTACCCAAGACGC GAGGCAATCAAGTCATCGTCATGATACAACATAGACTCCCCGGTTGTCCC CGCCGACTCGACCCCGCTCTCTCTCGGAACGCGCGATGATCCCCATAAAT CCGTGGTTCCCCTTTTTCGTCACGACACGGTCTAGACAGCGGTGGTCTCT CTCTATCTCGAGTGGTCCTCGTCTCAAGCGGGGCGCATAGGTGGGCGTCA GCCGGCGGCAGGGGCGCCGCGGGAGGACTCGCCAGCGGCGCCGGAGCGTC GGCGGAAGCGATGCTGGGCGGGAATCGAGGATGGAGCGTGAACAGATGGA GGTCGTACGCTGGGAGTAAGTTGTGCAACGTGCTATACGCTTCGGAGCTG ACGAAGCGGTACGGCGGGGAGGGGAGCGGCGTCGTAGGGGTGTCGGTGCG GCCGGGTACAGTTGCGACAAACATCACCAGGCACAGCACGGCGCTGCGTC TTCTGTTCGCCGTGGCTTTCCCGTTTCTCACTCCACTGGAAAAGGTGTCG AAACCCCGAGCTGTGGTGTGATGGTTGGTCGCTGGTAGTGATAGGAACCA TCCAACGATAAGTGTGAGGGGAAATTACTAAAGCTTCCACGATTCATGAG GGAACGAGGTAAATTGGTACACTTCGGGTCTTCGGGGGCCAAAACAGACC CATGCCCTCTACGATAATCATGTGTCTAATCTAAAGACTTGCGGCCGGAG ATTCGTGATTTAACCATCGATAGGGGACAAGCTAGTTTTAATCTTCCTCT TTCCAAACCGTGGGTGCATAGGCAAATCCCCTCCCCATCCCTATCGCTGA ATTGGTCGTGGAAAAATAAGACTTTCCCATTCTGAATCGTCAATTTTCGA AATTGTGACTTTTTTTAATCGACATTCACGATGGAGCAAGGGTGCCGTTC ATGAAATAAGAGATAAAATTTCGTAAGAATTTTGAAAACAGCGCTTCCAA GGTATGTCGTAGTTTGATTTGATTGGCCCGTGAGGAGGCCGCTCGGGGTT TCCAATCCCCCAAAGGTGGATATTTTTTGTGTCCTATGGTATACAGACGG CCAGCTTTCAGCGGTGTGCGTTAACGCTGCAGTCATTTCTCACTCGCTGC CTTGCATGATGTTTGTGTCGCGGAGATGCCTTTCCTGTCTTTACTTTGCA ACGCCTGAAACTGCTCCCTTTTCGATGCGACGCGCGCATCGCTTCGTTGT CAGGCCGGAGAAGCGGTGGCTCGAACCGCAACCAACTCACACATAGTACC GGGGGGCTACTACGACAGGGGCACACTCAAGTCCCCGAGCGCGGCGGCGC TGGACGAGACTTTGCAGGAGGCGTTGTGGGAGGTGACAAAGAACGTACTC TCATCGGGGAAGTAACCTCTGGATCGCTGTTCTGGCCTAGATGGGATCCG CGAAAGGTTCCTCCCGTAAGGATAGCTGACAAGTGCTTTCATCCGTTTTA TCTGAAAGATGATGAAAAGCCATGATGCAAGGGGATACCATTATGTTCAT AAATAACGAAATAACACGGTTTAACGGGGTGTCGCTTTCACAGTGGTCGG GA
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Coding sequence (CDS) from alignment at H-elongata_contig17601:515..3016+

>mRNA_H-elongata_contig17601.4595.1 ID=mRNA_H-elongata_contig17601.4595.1|Name=mRNA_H-elongata_contig17601.4595.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig17601:515..3016+ (Himanthalia elongata Himel1 dioecious)
ATGGCGCCGCCCTATGAGACTACCGTAGACGGTCATGAGCTTACCTTCCA
GATGGCGCCGCCCTATGAGACTACCGTAGACGGTCATGAGCTTACCTTCC
AGGTGAACCATCTGTCGCCCTTCTTGTTGACGGATCTCTTGCTCCCGAAC
TTGCGGAGAGCTCACAAAGGTGAACCATCTGTCGCCCTTCTTGTTGACGG
ATCTCTTGCTCCCGAACTTGCGGAGAGCTCACAAAGACAGCGGTGGTCTC
TCTCTATCTCGAGTGGTCCTCGTCTCAAGCGGGGCGCATAGGTGGGCGTC
AGCCGGCGGCAGGGGCGCCGCGGGAGGACTCGCCAGCGGCGCCGGAGCGT
CGGCGGAAGCGATGCTGGGCGGGAATCGAGGATGGAGCGTGAACAGATGG
AGGTCGTACGCTGGGAGTAAGTTGTGCAACGTGCTATACGCTTCGGAGCT
GACGAAGCGGTACGGCGGGGAGGGGAGCGGCGTCGTAGGGGTGTCGGTGC
GGCCGGGTACAGTTGCGACAAACATCACCAGGCACAGCACGGCGCTGCGT
CTTCTGTTCGCCGTGGCTTTCCCGTTTCTCACTCCACTGGAAAAGGTGTC
GAAACCCCGAGCTACAGCGGTGGTCTCTCTCTATCTCGAGTGGTCCTCGT
CTCAAGCGGGGCGCATAGGTGGGCGTCAGCCGGCGGCAGGGGCGCCGCGG
GAGGACTCGCCAGCGGCGCCGGAGCGTCGGCGGAAGCGATGCTGGGCGGG
AATCGAGGATGGAGCGTGAACAGATGGAGGTCGTACGCTGGGAGTAAGTT
GTGCAACGTGCTATACGCTTCGGAGCTGACGAAGCGGTACGGCGGGGAGG
GGAGCGGCGTCGTAGGGGTGTCGGTGCGGCCGGGTACAGTTGCGACAAAC
ATCACCAGGCACAGCACGGCGCTGCGTCTTCTGTTCGCCGTGGCTTTCCC
GTTTCTCACTCCACTGGAAAAGGTGTCGAAACCCCGAGCTGAACCATCCA
ACGATAAGTGTGAGGGGAAATTACTAAAGCTTCCACGATTCATGAGGGAA
CGAGGTAAATTGGTACACTTCGGGTCTTCGGGGGCCAAAACAGACCCATG
CCCTCTACGATAAGAACCATCCAACGATAAGTGTGAGGGGAAATTACTAA
AGCTTCCACGATTCATGAGGGAACGAGGTAAATTGGTACACTTCGGGTCT
TCGGGGGCCAAAACAGACCCATGCCCTCTACGATAA
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