mRNA_H-elongata_contig17477.4545.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17477.4545.1
Unique NamemRNA_H-elongata_contig17477.4545.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A6H5JJJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ5_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 3.080e-37
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 1
Query:   13 PSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNV 240
            PSPPVWPGRFHA + Q    D G+ DLWYD+A GRNLN+IQTQS EEDGPLFDNERANGT YYY PAK K+KYCNV
Sbjct:   29 PSPPVWPGRFHAMMSQVINGDYGVVDLWYDYAAGRNLNIIQTQSGEEDGPLFDNERANGTTYYYHPAKAKSKYCNV 104          
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: D8LTP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP6_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.510e-20
Identity = 39/48 (81.25%), Postives = 43/48 (89.58%), Query Frame = 1
Query:   97 YDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNV 240
            YD++ GRNLN+IQTQS EEDGPLFDNERANGT YYY PAK K+KYCNV
Sbjct:   72 YDYSAGRNLNIIQTQSGEEDGPLFDNERANGTTYYYHPAKAKSKYCNV 119          
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A4V6D091_SETVI (Uncharacterized protein n=3 Tax=Setaria TaxID=4554 RepID=A0A4V6D091_SETVI)

HSP 1 Score: 89.4 bits (220), Expect = 2.500e-20
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    4 AGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
            AGDP+P  WP +FHAT+      ++ IADLWYD+ GGRNL+VI+ Q A+ D P FDNE  NGT ++Y PA+   +   VG
Sbjct:   25 AGDPTPTPWPPQFHATMVMDYHGNMSIADLWYDWPGGRNLHVIRYQLAD-DAPYFDNEWNNGTSFFYTPARRSCRSAAVG 103          
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A835YZ81_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ81_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.730e-19
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   13 PSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
            P  PVWP RFHA   Q+RG+DLGI DL+YD+  G NLN+I+    + DGP+FD E  NGT Y Y PA  K K    G
Sbjct:   30 PPYPVWPDRFHAVSQQKRGEDLGIVDLYYDWPRGGNLNLIR----QADGPIFDMEWGNGTSYVYTPATQKCKVVKFG 102          
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A804M7F7_MAIZE (Uncharacterized protein n=2 Tax=Andropogoneae TaxID=147429 RepID=A0A804M7F7_MAIZE)

HSP 1 Score: 82.8 bits (203), Expect = 3.150e-18
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    4 AGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
            A DP+P  WP +FHAT+      ++ +ADLWYD+ GGRNL+VI+ Q A  D P +DNE  NGT ++Y PA    +   VG
Sbjct:   28 AADPTPTPWPPQFHATLVMDYHGNMSVADLWYDWPGGRNLHVIRYQLAA-DAPYYDNEWNNGTSFFYTPALRTCRSAAVG 106          
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: J3LUS8_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LUS8_ORYBR)

HSP 1 Score: 81.6 bits (200), Expect = 6.520e-18
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    4 AGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
            AG P P  WP +FHA +      +L +ADLWYD+ GGRNL+VI+ Q A  D P +DNE  NGT ++Y PA+   +   VG
Sbjct:    3 AGPPPPTPWPPQFHAKLLMDFHGNLSLADLWYDWPGGRNLHVIRYQLAA-DAPFYDNEWNNGTSFFYTPARRTCRSAAVG 81          
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: B6TW11_MAIZE (Uncharacterized protein n=4 Tax=Zea mays TaxID=4577 RepID=B6TW11_MAIZE)

HSP 1 Score: 82.8 bits (203), Expect = 9.790e-18
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    4 AGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
            A DP+P  WP +FHAT+      ++ +ADLWYD+ GGRNL+VI+ Q A  D P +DNE  NGT ++Y PA    +   VG
Sbjct:   28 AADPTPTPWPPQFHATLVMDYHGNMSVADLWYDWPGGRNLHVIRYQLAA-DAPYYDNEWNNGTSFFYTPALRTCRSAAVG 106          
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A2T7BY90_9POAL (Uncharacterized protein n=3 Tax=Panicum TaxID=4539 RepID=A0A2T7BY90_9POAL)

HSP 1 Score: 81.3 bits (199), Expect = 3.430e-17
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1
Query:    4 AGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
            AGDP+P  WP +FHA +      +L +ADLWYD+ GGRNL+V + Q A  D P +DNE  NGT ++Y P++       VG
Sbjct:   26 AGDPNPTPWPPQFHAKLVMDYHGNLSVADLWYDWPGGRNLHVTRYQLAA-DAPFYDNEWNNGTSFFYTPSRRACHSAAVG 104          
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: UPI001ADA91D5 (uncharacterized protein At4g14100-like n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADA91D5)

HSP 1 Score: 81.3 bits (199), Expect = 4.530e-17
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   10 DPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
            DP+P  WP +FHA +      +L +ADLWYD+ GGRNL+VI+ Q A  D P +DNE  NGT ++Y PA+   +   VG
Sbjct:   35 DPTPTPWPPQFHAKLLMDFHGNLSLADLWYDWPGGRNLHVIRYQLAA-DAPFYDNEWNNGTSFFYTPARRTCRSAAVG 111          
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Match: A0A6G1D1J0_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1D1J0_9ORYZ)

HSP 1 Score: 80.9 bits (198), Expect = 5.610e-17
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1
Query:   10 DPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAEEDGPLFDNERANGTGYYYLPAKGKAKYCNVG 243
            DP P  WP RFHA +      ++ +ADLWYD+ GGRNL+VI+ Q A  D P +DNE  NGT ++Y PA+   +   VG
Sbjct:   28 DPKPTPWPPRFHAKLVMDFHGNMSLADLWYDWPGGRNLHVIRYQLAG-DAPFYDNEWNNGTSFFYTPARRTCRTAAVG 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17477.4545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJJ5_9PHAE3.080e-3776.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP6_ECTSI1.510e-2081.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4V6D091_SETVI2.500e-2051.25Uncharacterized protein n=3 Tax=Setaria TaxID=4554... [more]
A0A835YZ81_9STRA5.730e-1953.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A804M7F7_MAIZE3.150e-1847.50Uncharacterized protein n=2 Tax=Andropogoneae TaxI... [more]
J3LUS8_ORYBR6.520e-1847.50Uncharacterized protein n=1 Tax=Oryza brachyantha ... [more]
B6TW11_MAIZE9.790e-1847.50Uncharacterized protein n=4 Tax=Zea mays TaxID=457... [more]
A0A2T7BY90_9POAL3.430e-1746.25Uncharacterized protein n=3 Tax=Panicum TaxID=4539... [more]
UPI001ADA91D54.530e-1747.44uncharacterized protein At4g14100-like n=1 Tax=Ory... [more]
A0A6G1D1J0_9ORYZ5.610e-1747.44Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17477contigH-elongata_contig17477:1127..1687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue2.3e-16
Seed eggNOG ortholog2880.D8LTP6
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG OGs28P6Y@1,2QVTW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-28_003310.1
Exons2
Model size245
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930013.3101013-CDS-H-elongata_contig17477:1126..12211622930013.3101013-CDS-H-elongata_contig17477:1126..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17477 1127..1221 +
1691679246.2432344-CDS-H-elongata_contig17477:1126..12211691679246.2432344-CDS-H-elongata_contig17477:1126..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17477 1127..1221 +
1622930013.322786-CDS-H-elongata_contig17477:1539..16871622930013.322786-CDS-H-elongata_contig17477:1539..1687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17477 1540..1687 +
1691679246.2621996-CDS-H-elongata_contig17477:1539..16871691679246.2621996-CDS-H-elongata_contig17477:1539..1687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17477 1540..1687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17477.4545.1prot_H-elongata_contig17477.4545.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17477 1127..1687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17477.4545.1

>prot_H-elongata_contig17477.4545.1 ID=prot_H-elongata_contig17477.4545.1|Name=mRNA_H-elongata_contig17477.4545.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
TAGDPSPPVWPGRFHATIFQRRGDDLGIADLWYDFAGGRNLNVIQTQSAE
EDGPLFDNERANGTGYYYLPAKGKAKYCNVG
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mRNA from alignment at H-elongata_contig17477:1127..1687+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17477.4545.1 ID=mRNA_H-elongata_contig17477.4545.1|Name=mRNA_H-elongata_contig17477.4545.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=561bp|location=Sequence derived from alignment at H-elongata_contig17477:1127..1687+ (Himanthalia elongata Himel1 dioecious)
ACCGCGGGCGACCCTTCACCTCCAGTGTGGCCCGGCCGCTTTCACGCGAC GATATTTCAAAGGCGTGGGGATGACCTCGGCATAGCCGATCTTTGGTGCG TTCTCCCCGCTCTGATTCCGCCTGCCACAACTTGAACTGATCTCCACCCC TCTGTTTCCGGGCGAAAAGCTCGTTTCTTAGACGCAGATCATCCACACGA TTTGAAGCAGTAGCTTCGCCCGCCAACACGCTCGCTTACATTACGCGAGG CCTATTTCCCATGAGTCATCTATCTATCTATATATTCCATAATACCAGCC TCGACGACCGATGGCCAAGGCCTTCAGCATACCATGCCACCAAAGTAGTG TTCGTTGCGAGGGTGCCATCGTCCATCTGACCATGCCGACCGAAAATTGC CCTTGATCTTCAGGTACGACTTTGCGGGGGGCCGCAACCTGAACGTTATT CAGACGCAGAGTGCCGAAGAGGACGGCCCCCTGTTCGACAACGAGCGGGC TAACGGGACCGGCTACTACTATCTCCCCGCTAAGGGCAAGGCCAAGTACT GCAACGTGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig17477:1127..1687+

>mRNA_H-elongata_contig17477.4545.1 ID=mRNA_H-elongata_contig17477.4545.1|Name=mRNA_H-elongata_contig17477.4545.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig17477:1127..1687+ (Himanthalia elongata Himel1 dioecious)
ACCGCGGGCGACCCTTCACCTCCAGTGTGGCCCGGCCGCTTTCACGCGAC
GATATTTCAAAGGCGTGGGGATGACCTCGGCATAGCCGATCTTTGACCGC
GGGCGACCCTTCACCTCCAGTGTGGCCCGGCCGCTTTCACGCGACGATAT
TTCAAAGGCGTGGGGATGACCTCGGCATAGCCGATCTTTGGTACGACTTT
GCGGGGGGCCGCAACCTGAACGTTATTCAGACGCAGAGTGCCGAAGAGGA
CGGCCCCCTGTTCGACAACGAGCGGGCTAACGGGACCGGCTACTACTATC
TCCCCGCTAAGGGCAAGGCCAAGTACTGCAACGTGGGTGTACGACTTTGC
GGGGGGCCGCAACCTGAACGTTATTCAGACGCAGAGTGCCGAAGAGGACG
GCCCCCTGTTCGACAACGAGCGGGCTAACGGGACCGGCTACTACTATCTC
CCCGCTAAGGGCAAGGCCAAGTACTGCAACGTGGGT
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