mRNA_H-elongata_contig17443.4534.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17443.4534.1
Unique NamemRNA_H-elongata_contig17443.4534.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Match: D8LMG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG0_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 4.840e-39
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 1
Query:    1 CIPSSQLLLLPLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLHKTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLYFLD 276
            C+   QLLLLPLLVG+S WSL+L+NTLYA+AFS YFY+THLGYRSLPFLH TE+FLYPVVGIIMLLLLSIILLPF   +NAT+ +A+LYFLD
Sbjct:  131 CLYVVQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGIRINATLAMAKLYFLD 222          
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Match: A0A835Z945_9STRA (UNC-50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z945_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 5.300e-21
Identity = 50/86 (58.14%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   16 QLLLLPLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLHKTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLYFL 273
            Q LLLP+L+G S  +L+LSN LYA+ F  YFYITHLGYRSLPFL KTE FLYPVV ++ LL  S++L      +N T  +A +YFL
Sbjct:  174 QFLLLPVLLGPSVGALLLSNALYALGFGAYFYITHLGYRSLPFLCKTETFLYPVVAVVTLLATSVLLAALGMRVNMTRVMAHVYFL 259          
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Match: A0A7S2U7N4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7N4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.220e-20
Identity = 47/85 (55.29%), Postives = 65/85 (76.47%), Query Frame = 1
Query:   16 QLLLLPLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLHKTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLYF 270
            Q  LLP+++G+S  SLVL+NTLYA AFS YFYITHLGYR+LPFL  TE+FL+P+ GI+++ L++++  PF    NA+  +A  YF
Sbjct:  204 QFFLLPIVLGKSLLSLVLANTLYAAAFSWYFYITHLGYRALPFLSSTEVFLFPIAGIMIVYLINLVGYPFGFGWNASRIMAHFYF 288          
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Match: A0A7S1Y6X4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6X4_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 8.310e-20
Identity = 45/87 (51.72%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   16 QLLLLPLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLHKTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLYFLD 276
            Q  LLPL++G S  +LV++NTLYA+AFS Y+YITHLGYRSLPFL  TE+F++P+  +I+L +L+++  PFN   N     A++Y  D
Sbjct:  155 QFFLLPLILGNSFLALVVANTLYAVAFSWYWYITHLGYRSLPFLTNTEVFMFPIAAVILLFVLNLVGYPFNFGWNFARVFAQIYLRD 241          
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Match: A0A1E7FEU6_9STRA (UNC-50 protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEU6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.580e-19
Identity = 45/85 (52.94%), Postives = 65/85 (76.47%), Query Frame = 1
Query:   16 QLLLLPLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLHKTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLYF 270
            Q  LLPL++G+S +SLV+SNTLYA  F+ Y+YITHLGYR+LPFL +TE+FL+PV  I ++ +L+++  PF    NA+  +A +YF
Sbjct:  155 QFFLLPLVLGKSLFSLVVSNTLYAAGFAWYWYITHLGYRALPFLSQTEVFLFPVAAIALVFVLNLVGYPFGLGWNASRIMAHIYF 239          
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Match: A0A7S1BXA5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BXA5_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.700e-19
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   31 PLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLHKTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLYF 270
            P LVGES    ++SN LYA AFS YFY+THLGYR+LPFL  TE+FLYP+V +++L  L+II  P    +N +    R YF
Sbjct:   50 PFLVGESLLPFIMSNALYAAAFSWYFYVTHLGYRALPFLSNTEVFLYPIVAVLLLCTLNIIFYPLGLGVNPSGWAVRYYF 129          
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Match: A0A7R9VZW9_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZW9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.210e-19
Identity = 43/85 (50.59%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   16 QLLLLPLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLHKTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLYF 270
            Q  LLPL++G S  +L+LSNTL+A AF  YFY+THLGYR+LPFL  TE+FL+P+  +  L +L+++  PF    NA+  +A +YF
Sbjct:   59 QFFLLPLVLGRSLAALLLSNTLFAAAFGWYFYVTHLGYRALPFLSNTEVFLFPIAAVAFLYVLNLVGYPFGFGWNASRIMAYIYF 143          
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Match: A0A7S1GMY0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMY0_CYCTE)

HSP 1 Score: 87.0 bits (214), Expect = 7.230e-19
Identity = 44/84 (52.38%), Postives = 64/84 (76.19%), Query Frame = 1
Query:   16 QLLLLPLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLHKTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLY 267
            Q  LLPL++G+S  + +LSNTLYA AFS Y+YITHLGYR+LPFL  TE+FL+P+ GI ++ +L+++  PF+   NA+  +A +Y
Sbjct:  166 QFFLLPLVLGKSLLAFLLSNTLYAAAFSWYWYITHLGYRALPFLSNTEVFLFPIAGIALVFVLNLVGYPFDMGWNASRLLATIY 249          
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Match: A0A7S0G7V0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G7V0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.020e-18
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   13 SQLLLLPLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLHKTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLYF 270
            +Q  LLP+++     SL++SNTLYA+AF  YFYITHLGYR+LPFL  TE+FL+PV G+  + +L+ I  PF    NA+  VA LYF
Sbjct:  207 AQFFLLPVVLQRGLVSLIVSNTLYALAFGWYFYITHLGYRALPFLSGTEVFLFPVAGVAAIYVLNFIGFPFGLGFNASRLVAHLYF 292          
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Match: A0A448ZP33_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZP33_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.100e-18
Identity = 43/85 (50.59%), Postives = 65/85 (76.47%), Query Frame = 1
Query:   16 QLLLLPLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLHKTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLYF 270
            Q  LLPL++G+S ++L+ SNTLYA AF+ Y+YITHLGYR+LPFL +TE+FL+P+  I ++ +L+++  PF    NA+  +A +YF
Sbjct:  188 QFFLLPLVLGKSLFALIASNTLYAGAFAWYWYITHLGYRALPFLSQTEVFLFPIAAIGLVYVLNLVGYPFGMGWNASRIMAHIYF 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17443.4534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMG0_ECTSI4.840e-3977.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z945_9STRA5.300e-2158.14UNC-50 n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S2U7N4_9STRA1.220e-2055.29Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1Y6X4_9STRA8.310e-2051.72Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1E7FEU6_9STRA1.580e-1952.94UNC-50 protein n=1 Tax=Fragilariopsis cylindrus CC... [more]
A0A7S1BXA5_9STRA1.700e-1953.75Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7R9VZW9_9STRA6.210e-1950.59Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S1GMY0_CYCTE7.230e-1952.38Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S0G7V0_9STRA1.020e-1853.49Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A448ZP33_9STRA4.100e-1850.59Uncharacterized protein n=2 Tax=Pseudo-nitzschia T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17443contigH-elongata_contig17443:6627..7234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue4.9e-31
Seed eggNOG ortholog2880.D8LMG0
Preferred nameUNC50
GOsGO:0000139,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005794,GO:0006810,GO:0006937,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0019866,GO:0023052,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031503,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044057,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051668,GO:0051716,GO:0065007,GO:0090257,GO:0097120,GO:0097159,GO:0098588,GO:0098791,GO:1901363
EggNOG free text desc.protein transport
EggNOG OGsKOG3012@1,KOG3012@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionUNC-50
Ec32 orthologEc-05_002620.3
Exons2
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930011.803424-CDS-H-elongata_contig17443:6626..67751622930011.803424-CDS-H-elongata_contig17443:6626..6775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17443 6627..6775 -
1691679245.4419286-CDS-H-elongata_contig17443:6626..67751691679245.4419286-CDS-H-elongata_contig17443:6626..6775Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17443 6627..6775 -
1622930011.8167887-CDS-H-elongata_contig17443:7101..72341622930011.8167887-CDS-H-elongata_contig17443:7101..7234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17443 7102..7234 -
1691679245.4531314-CDS-H-elongata_contig17443:7101..72341691679245.4531314-CDS-H-elongata_contig17443:7101..7234Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17443 7102..7234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17443.4534.1prot_H-elongata_contig17443.4534.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17443 6627..7234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17443.4534.1

>prot_H-elongata_contig17443.4534.1 ID=prot_H-elongata_contig17443.4534.1|Name=mRNA_H-elongata_contig17443.4534.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
CIPSSQLLLLPLLVGESSWSLVLSNTLYAMAFSEYFYITHLGYRSLPFLH
KTEIFLYPVVGIIMLLLLSIILLPFNSSLNATITVARLYFLDS*
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mRNA from alignment at H-elongata_contig17443:6627..7234-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17443.4534.1 ID=mRNA_H-elongata_contig17443.4534.1|Name=mRNA_H-elongata_contig17443.4534.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=608bp|location=Sequence derived from alignment at H-elongata_contig17443:6627..7234- (Himanthalia elongata Himel1 dioecious)
TGTATCCCGTCTTCACAGCTGCTGCTCCTGCCTCTCTTGGTTGGAGAGTC GTCGTGGTCGCTGGTGCTATCGAATACGCTGTACGCGATGGCCTTCTCGG AATACTTTTACATCACTCATCTGGGGTATCGATGTGAGGAGTCCGTGTAT AGTGCGTGCGTATGCGACGGTTTTGTAGCGATTAGGAGGCATGTGGGGTT GAAGGAGAGAGAGAAAGAAAGAGAGGCCTTTGATGATGTGAGGGGCATAA TGTATGATGATGTCGCCACAGCACCTTGAGCCGTAGGGGGGATGACGGGT GACATGTATAATCCCCTCGCCGCCCGCATCTCTTACTCTCTCTAAATATA CTGCATTATATGTACGTGTGTCTGTTTGTCGCAGTAAAGGGTATGACGCG TGAAATGTATAATCCCCTCCTCGCCCGATTGTTGCCCTTTTTCTATTGCC GACCCACAGCGCTCCCATTCTTGCACAAGACCGAGATTTTCCTGTATCCT GTGGTGGGCATCATCATGCTGCTGTTGCTGTCCATAATCCTCTTGCCCTT CAACAGTTCCTTGAATGCGACCATCACTGTGGCGAGACTCTACTTTCTCG ATTCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig17443:6627..7234-

>mRNA_H-elongata_contig17443.4534.1 ID=mRNA_H-elongata_contig17443.4534.1|Name=mRNA_H-elongata_contig17443.4534.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig17443:6627..7234- (Himanthalia elongata Himel1 dioecious)
TGTATCCCGTCTTCACAGCTGCTGCTCCTGCCTCTCTTGGTTGGAGAGTC
GTCGTGGTCGCTGGTGCTATCGAATACGCTGTACGCGATGGCCTTCTCGG
AATACTTTTACATCACTCATCTGGGGTATCGATTGTATCCCGTCTTCACA
GCTGCTGCTCCTGCCTCTCTTGGTTGGAGAGTCGTCGTGGTCGCTGGTGC
TATCGAATACGCTGTACGCGATGGCCTTCTCGGAATACTTTTACATCACT
CATCTGGGGTATCGATCGCTCCCATTCTTGCACAAGACCGAGATTTTCCT
GTATCCTGTGGTGGGCATCATCATGCTGCTGTTGCTGTCCATAATCCTCT
TGCCCTTCAACAGTTCCTTGAATGCGACCATCACTGTGGCGAGACTCTAC
TTTCTCGATTCTTGACGCTCCCATTCTTGCACAAGACCGAGATTTTCCTG
TATCCTGTGGTGGGCATCATCATGCTGCTGTTGCTGTCCATAATCCTCTT
GCCCTTCAACAGTTCCTTGAATGCGACCATCACTGTGGCGAGACTCTACT
TTCTCGATTCTTGA
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