mRNA_H-elongata_contig105445.451.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: D7FMV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMV6_ECTSI) HSP 1 Score: 203 bits (517), Expect = 8.250e-61 Identity = 95/139 (68.35%), Postives = 106/139 (76.26%), Query Frame = 1
Query: 1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSV----------ARGESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
LKC+HFK C GC FDRRFDETPIMVDS S ARG + S +E H IH W PHGWRT+AKLAARPVS+W GVELGLY GSH+V+GIP CRVHHPSVNLAV LQ + KK+GVTGFRQEN +GDLRYVQ+
Sbjct: 112 LKCRHFKACAGCVFDRRFDETPIMVDSSSFMDSLHSTGARARGGAKAASDFEPHVIHPWKPHGWRTLAKLAARPVSKWRGVELGLYSAGSHNVIGIPDCRVHHPSVNLAVKTLQESTKKIGVTGFRQENLDGDLRYVQM 250
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A836CA04_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA04_9STRA) HSP 1 Score: 145 bits (366), Expect = 1.720e-38 Identity = 70/138 (50.72%), Postives = 90/138 (65.22%), Query Frame = 1
Query: 1 LKCKHFKLCPGCEFDRRFDETPIMVDSRS--------VARGE--SNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQ 384
L+C HF CPGC DR FD TPIM ++ S AR + S G + R++IH +PHGWRT AKLA P ++GGV LGLY+ GSH V+ IP C+VHHP++N AV+VL AA K +TG+ ++ EG LRYVQ
Sbjct: 153 LQCPHFAECPGCAVDRAFDNTPIMSEASSFCDTQMALAARAKLGSRGEADAPRYSIHLGNPHGWRTHAKLAVAPTGKYGGVRLGLYKAGSHSVVAIPNCKVHHPAINEAVEVLTKAATKARITGYSEDRMEGMLRYVQ 290
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: W7U2T6_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2T6_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.160e-27 Identity = 61/134 (45.52%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 1 LKCKHFKLCPGCEFDRRFDETPIMVDSR----SVARGESNGGSGYERHAIH-SWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
L+C+HF C GC + ETP+M ++R VAR Y+ ++ + HGWRT AKLA P+S+WGG +LGLY GSH V+ IP CRVHHPS+N AV VL A + F + G LRYVQV
Sbjct: 257 LQCEHFGACSGCFYRSGLVETPVMENARVFFQRVAR--------YDNFSLGLATGVHGWRTQAKLAVAPLSKWGGCQLGLYEEGSHRVLPIPNCRVHHPSINRAVQVLTEATVTMKTRAFDPASLGGSLRYVQV 382
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: L1J028_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J028_GUITC) HSP 1 Score: 112 bits (281), Expect = 3.880e-27 Identity = 54/129 (41.86%), Postives = 79/129 (61.24%), Query Frame = 1
Query: 1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
L+C HF CPGC + +TP + +++ G +G E ++ H WRT+AKLA P + G E+GLY+ G+HDV+ IP+CRVHHPS+N AV +LQ VG+ + +++ EG LRYVQ+
Sbjct: 2 LRCVHFGACPGCIVEANLHDTPTINEAKMFL-GALTKQAGRE-FEVNMGQIHRWRTLAKLAVSPTNNEMGFEIGLYKSGTHDVLAIPRCRVHHPSINEAVSILQEEMLAVGIQAYDEKSSEGHLRYVQM 128
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A7S0H4U7_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H4U7_9EUKA) HSP 1 Score: 111 bits (277), Expect = 1.010e-26 Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = 1
Query: 1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
+ CKHF C GCEF+ D PI +RS A S G + IH H WRT AKLA R + GGVE+GL+ GSH ++ IP C VHHPS+N AV L+AA K ++G+ +++ G LRYVQ+
Sbjct: 9 ITCKHFSKCSGCEFENAVDYPPI---ARSAADFFSQK-LGLKHFQIHMKTAHAWRTQAKLAVRRGKK-GGVEIGLFEAGSHRLVEIPDCEVHHPSINEAVRFLKAATKAARISGYDEKSCRGQLRYVQM 132
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A7S1TR61_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TR61_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.620e-24 Identity = 54/139 (38.85%), Postives = 83/139 (59.71%), Query Frame = 1
Query: 1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGES--NGGS--GYERHAIHSWDPHGWRTVAKLAARP--VSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGF----RQENYEGDLRYVQV 387
+ C+HF+ C GC + D P +++++S + +GG+ G++ +H + GWRT+AKLA P GGV LGLY+ GSHDV IP+C VHHP++N V + A++K+GV+ F R + +G LRYV +
Sbjct: 18 ISCEHFEECGGCIANEDLDRVPAVLEAKSFCESQLAISGGTTPGFD---VHLGETEGWRTLAKLAVAPGGAGPKGGVRLGLYQTGSHDVFEIPRCEVHHPAINAVVQAITKASRKIGVSAFEEGTRGDEGKGQLRYVTI 153
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A482S2C7_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2C7_9ARCH) HSP 1 Score: 99.4 bits (246), Expect = 1.560e-23 Identity = 51/142 (35.92%), Postives = 75/142 (52.82%), Query Frame = 1
Query: 1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGF-------------RQENYEGDLRYVQV 387
L+CKHF C GC F + +M +R+ + I + WRT AKLA +P+S+WGG++ GLY+ SHDV+ IP+C+VHHP +N A ++L+ A GV G+ R +G L+YVQ+
Sbjct: 19 LQCKHFDTCSGCTLKSNFTNSLVMQRARAFFKARD------VDFKIDMGNVTEWRTHAKLAVQPLSKWGGLKFGLYKEASHDVLPIPECKVHHPRINEAAELLRQACLDAGVKGYVEGTSREGGRTVGRGTLPQGGLKYVQL 154
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A5J4YN80_PORPP (Putative RNA methyltransferase pc1998 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN80_PORPP) HSP 1 Score: 96.3 bits (238), Expect = 1.220e-20 Identity = 48/132 (36.36%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDPHGWRTVAKLAAR----PVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQ 384
+ C+HF C GC + R + P+ + +S A+ S IH + GWRT AKLA R PV +GL++ G+H V+ IP C+VHHPS+N+A +++ A ++G+T + + + G LRYVQ
Sbjct: 161 IACEHFGACSGCTLNERVNMPPLAEELQSYAKDALRYTSPV---LIHCGEERGWRTQAKLAVRGSPNPV-------MGLFKQGTHQVVPIPNCQVHHPSINVAAEIVNALVSQLGITAYNEISLRGQLRYVQ 282
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: A0A7S0SFU4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SFU4_9CHLO) HSP 1 Score: 91.7 bits (226), Expect = 4.430e-19 Identity = 54/139 (38.85%), Postives = 74/139 (53.24%), Query Frame = 1
Query: 1 LKCKHFKLCPGCEFDRRFDETPIMVDSRS--VARG--ESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGG------VELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
L C HF +C GC DE P + +R+ ARG + G +G HGWR A+LAAR V G V LGL+ G+HD++ IP C VHHP +N A ++ AA +VGV + + + G+LRYVQ+
Sbjct: 94 LDCPHFDVCSGCTMPVDLDEPPTLTRARAFFAARGVPDFQGTTGVV---------HGWRNRARLAARSVPDGSGRRSGKSVVLGLFARGTHDLVEIPDCVVHHPRINAAAAMVAEAAARVGVRAYDELDGTGELRYVQL 223
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Match: C5XGA0_SORBI (Uncharacterized protein n=22 Tax=Panicoideae TaxID=147369 RepID=C5XGA0_SORBI) HSP 1 Score: 91.3 bits (225), Expect = 6.810e-19 Identity = 46/129 (35.66%), Postives = 70/129 (54.26%), Query Frame = 1
Query: 1 LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDPHGWRTVAKLAARPVSRWGGVELGLYRLGSHDVMGIPQCRVHHPSVNLAVDVLQAAAKKVGVTGFRQENYEGDLRYVQV 387
L C HF C GC + D+ P++ + + +G G + R + W R AKLA R +GLY+ G+HDV+ IP+CR HHPS+N AV +L+ ++G+ F ++ G+LRYVQ+
Sbjct: 89 LDCVHFGKCSGCTHEVDLDKPPVLQEVANFFKGHGVGDFTFSRGRLSQW-----RCRAKLAVRGTPE--NPLIGLYQEGTHDVIDIPECRAHHPSINAAVKLLRQGITELGIQPFDEDAGTGELRYVQM 210 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105445.451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig105445.451.1 >prot_H-elongata_contig105445.451.1 ID=prot_H-elongata_contig105445.451.1|Name=mRNA_H-elongata_contig105445.451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp LKCKHFKLCPGCEFDRRFDETPIMVDSRSVARGESNGGSGYERHAIHSWDback to top mRNA from alignment at H-elongata_contig105445:91..1480- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig105445.451.1 ID=mRNA_H-elongata_contig105445.451.1|Name=mRNA_H-elongata_contig105445.451.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-elongata_contig105445:91..1480- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig105445:91..1480- >mRNA_H-elongata_contig105445.451.1 ID=mRNA_H-elongata_contig105445.451.1|Name=mRNA_H-elongata_contig105445.451.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig105445:91..1480- (Himanthalia elongata Himel1 dioecious)back to top |