prot_H-elongata_contig17343.4500.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17343.4500.1
Unique Nameprot_H-elongata_contig17343.4500.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length37
Homology
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BLAST of mRNA_H-elongata_contig17343.4500.1 vs. uniprot
Match: D7FQ49_ECTSI (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ49_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.550e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 0 
Query:    1 VELVPGGSRRAVTSANRLEYVNRVAKHHLVDGVKVQ 36
            V+L+PGGSRRAVTSANRLEYVNRVAKHHLVDGVK Q
Sbjct:  257 VDLIPGGSRRAVTSANRLEYVNRVAKHHLVDGVKPQ 292
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BLAST of mRNA_H-elongata_contig17343.4500.1 vs. uniprot
Match: A0A835Z958_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z958_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.260e-11
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0 
Query:    1 VELVPGGSRRAVTSANRLEYVNRVAKHHLVDGVKVQ 36
            VELVPGG++RAVTS NRLEYVNRVAKHHLVD V+ Q
Sbjct:  243 VELVPGGAQRAVTSRNRLEYVNRVAKHHLVDNVRSQ 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17343.4500.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ49_ECTSI3.550e-1391.67HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A835Z958_9STRA7.260e-1183.33HECT-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2160.10coord: 1..32
e-value: 1.0E-7
score: 33.7
IPR000569HECT domainPFAMPF00632HECTcoord: 1..36
e-value: 7.2E-5
score: 22.4
IPR000569HECT domainPROSITEPS50237HECTcoord: 1..36
score: 9.802
IPR035983HECT, E3 ligase catalytic domainSUPERFAMILY56204Hect, E3 ligase catalytic domaincoord: 1..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17343contigH-elongata_contig17343:6880..6990 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17343.4500.1mRNA_H-elongata_contig17343.4500.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17343 6880..6990 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17343.4500.1 ID=prot_H-elongata_contig17343.4500.1|Name=mRNA_H-elongata_contig17343.4500.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
VELVPGGSRRAVTSANRLEYVNRVAKHHLVDGVKVQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT_dom
IPR035983Hect_E3_ubiquitin_ligase