mRNA_H-elongata_contig17343.4500.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17343.4500.1
Unique NamemRNA_H-elongata_contig17343.4500.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17343.4500.1 vs. uniprot
Match: D7FQ49_ECTSI (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ49_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.550e-13
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 VELVPGGSRRAVTSANRLEYVNRVAKHHLVDGVKVQ 108
            V+L+PGGSRRAVTSANRLEYVNRVAKHHLVDGVK Q
Sbjct:  257 VDLIPGGSRRAVTSANRLEYVNRVAKHHLVDGVKPQ 292
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BLAST of mRNA_H-elongata_contig17343.4500.1 vs. uniprot
Match: A0A835Z958_9STRA (HECT-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z958_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.260e-11
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 VELVPGGSRRAVTSANRLEYVNRVAKHHLVDGVKVQ 108
            VELVPGG++RAVTS NRLEYVNRVAKHHLVD V+ Q
Sbjct:  243 VELVPGGAQRAVTSRNRLEYVNRVAKHHLVDNVRSQ 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17343.4500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ49_ECTSI3.550e-1391.67HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A835Z958_9STRA7.260e-1183.33HECT-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17343contigH-elongata_contig17343:6880..6990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.9
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D7FQ49
Preferred nameUPL
KEGG koko:K10588,ko:K10589
KEGG Pathwayko04120,map04120
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG4427@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.4350772-CDS-H-elongata_contig17343:6879..69901622930008.4350772-CDS-H-elongata_contig17343:6879..6990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17343 6880..6990 +
1691679243.9262004-CDS-H-elongata_contig17343:6879..69901691679243.9262004-CDS-H-elongata_contig17343:6879..6990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17343 6880..6990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17343.4500.1prot_H-elongata_contig17343.4500.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17343 6880..6990 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17343.4500.1

>prot_H-elongata_contig17343.4500.1 ID=prot_H-elongata_contig17343.4500.1|Name=mRNA_H-elongata_contig17343.4500.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=37bp
VELVPGGSRRAVTSANRLEYVNRVAKHHLVDGVKVQ*
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mRNA from alignment at H-elongata_contig17343:6880..6990+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17343.4500.1 ID=mRNA_H-elongata_contig17343.4500.1|Name=mRNA_H-elongata_contig17343.4500.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig17343:6880..6990+ (Himanthalia elongata Himel1 dioecious)
GTGGAACTGGTTCCCGGTGGATCGCGGCGCGCTGTGACCTCGGCCAATAG
GCTGGAGTACGTGAATCGGGTCGCCAAGCACCATCTCGTGGATGGTGTCA
AGGTACAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig17343:6880..6990+

>mRNA_H-elongata_contig17343.4500.1 ID=mRNA_H-elongata_contig17343.4500.1|Name=mRNA_H-elongata_contig17343.4500.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at H-elongata_contig17343:6880..6990+ (Himanthalia elongata Himel1 dioecious)
GTGGAACTGGTTCCCGGTGGATCGCGGCGCGCTGTGACCTCGGCCAATAG
GCTGGAGTACGTGAATCGGGTCGCCAAGCACCATCTCGTGGATGGTGTCA
AGGTACAATAGGTGGAACTGGTTCCCGGTGGATCGCGGCGCGCTGTGACC
TCGGCCAATAGGCTGGAGTACGTGAATCGGGTCGCCAAGCACCATCTCGT
GGATGGTGTCAAGGTACAATAG
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