mRNA_H-elongata_contig173227.4491.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A6H5L6G0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6G0_9PHAE) HSP 1 Score: 120 bits (300), Expect = 7.870e-31 Identity = 53/70 (75.71%), Postives = 63/70 (90.00%), Query Frame = 1
Query: 1 EEGMLREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVSG 210
E ML+ FPIYVCVPE+EVA+VIDSCP +K+EDLVF+ SGCLEPLLKSRG+CR EQTQATL+FSV+K+ G
Sbjct: 152 ETSMLQNFPIYVCVPEEEVAAVIDSCPDDKKEDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKLGG 221
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A7S0N4Z7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N4Z7_9CRYP) HSP 1 Score: 85.1 bits (209), Expect = 1.780e-19 Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query: 13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKV 204
+ FPIYVCVP D+V VI SCP +K +DLVF+Q+G +EPLLK LC +QTQATL+F+V K
Sbjct: 54 VTSFPIYVCVPNDDVEGVIKSCPKDKLDDLVFVQNGMMEPLLKKYALCSVDQTQATLYFTVFKA 117
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A6U2BD26_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2BD26_HEMAN) HSP 1 Score: 86.7 bits (213), Expect = 2.100e-18 Identity = 41/62 (66.13%), Postives = 47/62 (75.81%), Query Frame = 1
Query: 19 EFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKV 204
EFP+YVCVPEDEV SVI SCP EK +DLVF+Q G +E LLK GLC NE TQA L F++ V
Sbjct: 143 EFPVYVCVPEDEVESVIRSCPKEKVDDLVFVQGGNIEMLLKKYGLCGNENTQAVLNFNIMSV 204
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: W7U1I1_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1I1_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 2.550e-15 Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 1
Query: 13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSV 195
L FPIYVCVPE EV SVI CP EKR DLVF+QS CLE LLK GL + TQ +FS+
Sbjct: 148 LNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSI 208
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A836CIC7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIC7_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 5.860e-15 Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query: 4 EGMLRE-FPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVS 207
EG R FPIYV V E ++ +V+ +CP +KR DLVFLQ GC+EPLLK G C +QTQA L+++ E S
Sbjct: 67 EGNARSSFPIYVAVRERDLEAVLKACPDDKRADLVFLQGGCVEPLLKRYGACSKDQTQAVLWWTFEAGS 135
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A7S0EQY8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EQY8_9CRYP) HSP 1 Score: 76.6 bits (187), Expect = 7.020e-15 Identity = 35/66 (53.03%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVSG 210
L FPIYVCVP E+ VI SCPS K +DLVF+Q G +EP+LK LC NE TQ +F++ G
Sbjct: 101 LDSFPIYVCVPNSELEGVIRSCPSSKLDDLVFVQDGMIEPILKKYALCGNENTQMLPYFTLFSKGG 166
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A7S4NNE9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NNE9_GUITH) HSP 1 Score: 75.5 bits (184), Expect = 9.560e-15 Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVSG 210
L FP+YVCVP E+ +VI SCP K +DLVF+Q G +EP+LK LC NE TQ +F++ G
Sbjct: 25 LESFPVYVCVPTSELENVIRSCPQSKLDDLVFVQDGMIEPILKKYALCGNENTQMLPYFTLFSKGG 90
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A7S2S616_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S616_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 9.830e-15 Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 1
Query: 1 EEGMLREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLF 186
E G +PIY+C D VA+++++CP+E+R+DLVFLQ G LEP+LKS LC E TQA L+
Sbjct: 160 ELGGAASYPIYLCCSADTVAAILEACPAERRDDLVFLQRGFLEPVLKSMALCGAENTQAVLY 221
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: L1JQC7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JQC7_GUITC) HSP 1 Score: 75.5 bits (184), Expect = 1.990e-14 Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1
Query: 13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVSG 210
L FP+YVCVP E+ +VI SCP K +DLVF+Q G +EP+LK LC NE TQ +F++ G
Sbjct: 110 LESFPVYVCVPTSELENVIRSCPQSKLDDLVFVQDGMIEPILKKYALCGNENTQMLPYFTLFSKGG 175
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Match: A0A7R9U6V6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6V6_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 4.930e-13 Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 13 LREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRNEQTQATLFFSVEKVSG 210
L +FPIY CV ++ +I CP KR DLVFLQ+G +EPLLK GLC TQA +F +SG
Sbjct: 111 LTDFPIYACVAPMDLEQLILDCPEAKRPDLVFLQTGMMEPLLKRYGLCGKRNTQALCYFEFHPMSG 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173227.4491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig173227.4491.1 >prot_H-elongata_contig173227.4491.1 ID=prot_H-elongata_contig173227.4491.1|Name=mRNA_H-elongata_contig173227.4491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp MLREFPIYVCVPEDEVASVIDSCPSEKREDLVFLQSGCLEPLLKSRGLCRback to top mRNA from alignment at H-elongata_contig173227:942..1154- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig173227.4491.1 ID=mRNA_H-elongata_contig173227.4491.1|Name=mRNA_H-elongata_contig173227.4491.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig173227:942..1154- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig173227:942..1154- >mRNA_H-elongata_contig173227.4491.1 ID=mRNA_H-elongata_contig173227.4491.1|Name=mRNA_H-elongata_contig173227.4491.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig173227:942..1154- (Himanthalia elongata Himel1 dioecious)back to top |