mRNA_H-elongata_contig173116.4488.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig173116.4488.1
Unique NamemRNA_H-elongata_contig173116.4488.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig173116.4488.1 vs. uniprot
Match: D8LEM3_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEM3_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 3.290e-19
Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 VIALLGSGSGGLAELCSALDESKVAFCGLRVTGGGGSSGAVPRFHRILFVGEGVGGMKRGRAALQKNAV 207
            VI LLGSG GG++ELCS L +S VAFCG+RV    GS+    RFHRILFVGE VGGMK+GRAAL KNAV
Sbjct:   54 VIKLLGSGIGGVSELCSTLLDSMVAFCGVRVGDDKGSA----RFHRILFVGEEVGGMKKGRAALAKNAV 118
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BLAST of mRNA_H-elongata_contig173116.4488.1 vs. uniprot
Match: M7SDU9_EUTLA (Putative cofilin tropomyosin-type actin-binding protein n=1 Tax=Eutypa lata (strain UCR-EL1) TaxID=1287681 RepID=M7SDU9_EUTLA)

HSP 1 Score: 48.1 bits (113), Expect = 3.960e-5
Identity = 25/68 (36.76%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:    4 IALLGSGSGGLAELCSALDESKVAFCGLRVTGGGGSSGAVPRFHRILFVGEGVGGMKRGRAALQKNAV 207
            +AL G+G+GGLAEL S LD+S+  +  +RV     S     +F  ++++GEG   M++ R +++  AV
Sbjct:   38 LALTGTGTGGLAELASQLDDSQAQYAYVRVEYANDSESTRVKFALVVWIGEGTKVMRKARVSIESGAV 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig173116.4488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEM3_ECTSI3.290e-1969.57ADF-H domain-containing protein n=2 Tax=Ectocarpus... [more]
M7SDU9_EUTLA3.960e-536.76Putative cofilin tropomyosin-type actin-binding pr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig173116contigH-elongata_contig173116:732..938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue3.6e-15
Seed eggNOG ortholog2880.D8LEM3
EggNOG OGs2E604@1,2SCRT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-23_002470.1
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.4490354-CDS-H-elongata_contig173116:731..9381622930007.4490354-CDS-H-elongata_contig173116:731..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173116 732..938 +
1691679243.4729836-CDS-H-elongata_contig173116:731..9381691679243.4729836-CDS-H-elongata_contig173116:731..938Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig173116 732..938 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig173116.4488.1prot_H-elongata_contig173116.4488.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig173116 732..938 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig173116.4488.1

>prot_H-elongata_contig173116.4488.1 ID=prot_H-elongata_contig173116.4488.1|Name=mRNA_H-elongata_contig173116.4488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
VIALLGSGSGGLAELCSALDESKVAFCGLRVTGGGGSSGAVPRFHRILFV
GEGVGGMKRGRAALQKNAV
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mRNA from alignment at H-elongata_contig173116:732..938+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig173116.4488.1 ID=mRNA_H-elongata_contig173116.4488.1|Name=mRNA_H-elongata_contig173116.4488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig173116:732..938+ (Himanthalia elongata Himel1 dioecious)
GTGATTGCTCTGCTCGGCTCCGGCTCGGGGGGTCTCGCCGAGCTTTGTTC
GGCGCTTGACGAGAGCAAAGTGGCGTTTTGCGGCCTGCGCGTGACGGGCG
GGGGCGGTTCCTCCGGGGCAGTCCCGCGATTTCACCGAATCCTGTTCGTT
GGGGAGGGGGTCGGGGGCATGAAGAGGGGCAGGGCGGCCCTCCAGAAGAA
CGCCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig173116:732..938+

>mRNA_H-elongata_contig173116.4488.1 ID=mRNA_H-elongata_contig173116.4488.1|Name=mRNA_H-elongata_contig173116.4488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig173116:732..938+ (Himanthalia elongata Himel1 dioecious)
GTGATTGCTCTGCTCGGCTCCGGCTCGGGGGGTCTCGCCGAGCTTTGTTC
GGCGCTTGACGAGAGCAAAGTGGCGTTTTGCGGCCTGCGCGTGACGGGCG
GGGGCGGTTCCTCCGGGGCAGTCCCGCGATTTCACCGAATCCTGTTCGTT
GGGGAGGGGGTCGGGGGCATGAAGAGGGGCAGGGCGGCCCTCCAGAAGAA
CGCCGTGGTGATTGCTCTGCTCGGCTCCGGCTCGGGGGGTCTCGCCGAGC
TTTGTTCGGCGCTTGACGAGAGCAAAGTGGCGTTTTGCGGCCTGCGCGTG
ACGGGCGGGGGCGGTTCCTCCGGGGCAGTCCCGCGATTTCACCGAATCCT
GTTCGTTGGGGAGGGGGTCGGGGGCATGAAGAGGGGCAGGGCGGCCCTCC
AGAAGAACGCCGTG
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