mRNA_H-elongata_contig172885.4476.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172885.4476.1
Unique NamemRNA_H-elongata_contig172885.4476.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Match: A0A7S6ZPB8_9STRA (50S ribosomal protein L31, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPB8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.240e-20
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 
Query:    1 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNESK 111
            IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNESK
Sbjct:   35 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNESK 71
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BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Match: A0A3G2QZX3_9STRA (50S ribosomal protein L31, chloroplastic n=1 Tax=Neotessella volvocina TaxID=2419522 RepID=A0A3G2QZX3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 2.090e-17
Identity = 31/37 (83.78%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNESK 111
            +DIWSGNHPFYTGSQRIIDTEGRV++F RKYN+NE+K
Sbjct:   34 VDIWSGNHPFYTGSQRIIDTEGRVEKFQRKYNINETK 70
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BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Match: A0A1G4NXX0_9FLOR (50S ribosomal protein L31, chloroplastic n=1 Tax=Scinaia undulata TaxID=1884664 RepID=A0A1G4NXX0_9FLOR)

HSP 1 Score: 74.7 bits (182), Expect = 8.500e-17
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNESK 111
            +DIWSGNHPF+TGSQRIIDTEGRV+RF RKYNL E K
Sbjct:   35 VDIWSGNHPFFTGSQRIIDTEGRVERFVRKYNLTEQK 71
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BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Match: A0A342RZF5_9FLOR (50S ribosomal protein L31, chloroplastic n=1 Tax=Mastocarpus papillatus TaxID=31436 RepID=A0A342RZF5_9FLOR)

HSP 1 Score: 73.9 bits (180), Expect = 1.670e-16
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNESK 111
            +DIWSGNHPF+TGSQRIIDTEGRV+RF RKYNL + K
Sbjct:   35 VDIWSGNHPFFTGSQRIIDTEGRVERFMRKYNLKDEK 71
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BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Match: A0A4D6WRK3_9FLOR (50S ribosomal protein L31, chloroplastic n=1 Tax=Dicranema revolutum TaxID=239144 RepID=A0A4D6WRK3_9FLOR)

HSP 1 Score: 73.6 bits (179), Expect = 2.260e-16
Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNES 108
            +DIWSGNHPF+TGSQRIIDTEGRV+RF RKYNL E+
Sbjct:   35 VDIWSGNHPFFTGSQRIIDTEGRVERFMRKYNLQET 70
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BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Match: UPI001FCE16DD (ribosomal protein L31 n=1 Tax=Rhodella violacea TaxID=2801 RepID=UPI001FCE16DD)

HSP 1 Score: 73.2 bits (178), Expect = 3.460e-16
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNESK 111
            ID+WSGNHPFYTGSQRIIDTEGRV+RF RKYN  +S+
Sbjct:   35 IDLWSGNHPFYTGSQRIIDTEGRVERFMRKYNFTKSE 71
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BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Match: A0A1Z1XB65_9RHOD (50S ribosomal protein L31 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A1Z1XB65_9RHOD)

HSP 1 Score: 72.4 bits (176), Expect = 3.800e-16
Identity = 28/35 (80.00%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:    1 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNE 105
            +DIWSGNHPF+TGSQ+IIDTEGRV+RF RKYN+N+
Sbjct:   12 VDIWSGNHPFFTGSQKIIDTEGRVERFMRKYNIND 46
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BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Match: A0A3G2QYG5_9STRA (50S ribosomal protein L31, chloroplastic n=1 Tax=Synura petersenii TaxID=52555 RepID=A0A3G2QYG5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.840e-16
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNESK 111
            +DIWSGNHPFYTGSQ+IIDTEGRV++F RKYNL ES+
Sbjct:   34 VDIWSGNHPFYTGSQKIIDTEGRVEKFERKYNLKESE 70
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BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Match: A0A4D6X3G0_9FLOR (50S ribosomal protein L31, chloroplastic n=1 Tax=Inkyuleea mariana TaxID=123988 RepID=A0A4D6X3G0_9FLOR)

HSP 1 Score: 72.8 bits (177), Expect = 4.800e-16
Identity = 30/34 (88.24%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLN 102
            IDIWSGNHPF+TGSQ+IIDTEGRV+RF RKYNLN
Sbjct:   35 IDIWSGNHPFFTGSQKIIDTEGRVERFMRKYNLN 68
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BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Match: A0A1C9C7T8_RHOPU (50S ribosomal protein L31, chloroplastic n=1 Tax=Rhodymenia pseudopalmata TaxID=31502 RepID=A0A1C9C7T8_RHOPU)

HSP 1 Score: 72.8 bits (177), Expect = 4.920e-16
Identity = 30/35 (85.71%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNE 105
            IDIWSGNHPF+TGSQRIIDTEGRV+RF RKYN+ E
Sbjct:   35 IDIWSGNHPFFTGSQRIIDTEGRVERFMRKYNIKE 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172885.4476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6ZPB8_9STRA1.240e-20100.0050S ribosomal protein L31, chloroplastic n=1 Tax=S... [more]
A0A3G2QZX3_9STRA2.090e-1783.7850S ribosomal protein L31, chloroplastic n=1 Tax=N... [more]
A0A1G4NXX0_9FLOR8.500e-1783.7850S ribosomal protein L31, chloroplastic n=1 Tax=S... [more]
A0A342RZF5_9FLOR1.670e-1681.0850S ribosomal protein L31, chloroplastic n=1 Tax=M... [more]
A0A4D6WRK3_9FLOR2.260e-1683.3350S ribosomal protein L31, chloroplastic n=1 Tax=D... [more]
UPI001FCE16DD3.460e-1681.08ribosomal protein L31 n=1 Tax=Rhodella violacea Ta... [more]
A0A1Z1XB65_9RHOD3.800e-1680.0050S ribosomal protein L31 n=1 Tax=Compsopogon caer... [more]
A0A3G2QYG5_9STRA3.840e-1681.0850S ribosomal protein L31, chloroplastic n=1 Tax=S... [more]
A0A4D6X3G0_9FLOR4.800e-1688.2450S ribosomal protein L31, chloroplastic n=1 Tax=I... [more]
A0A1C9C7T8_RHOPU4.920e-1685.7150S ribosomal protein L31, chloroplastic n=1 Tax=R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172885contigH-elongata_contig172885:1228..1341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue8.7e-11
Seed eggNOG ortholog2880.D1J728
Preferred namerpl31
KEGG koko:K02909
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.rRNA binding
EggNOG OGs2S1BJ@2759,COG0254@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.1342616-CDS-H-elongata_contig172885:1227..13411622930006.1342616-CDS-H-elongata_contig172885:1227..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172885 1228..1341 -
1691679243.045959-CDS-H-elongata_contig172885:1227..13411691679243.045959-CDS-H-elongata_contig172885:1227..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172885 1228..1341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172885.4476.1prot_H-elongata_contig172885.4476.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172885 1228..1341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172885.4476.1

>prot_H-elongata_contig172885.4476.1 ID=prot_H-elongata_contig172885.4476.1|Name=mRNA_H-elongata_contig172885.4476.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
IDIWSGNHPFYTGSQRIIDTEGRVQRFFRKYNLNESK*
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mRNA from alignment at H-elongata_contig172885:1228..1341-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172885.4476.1 ID=mRNA_H-elongata_contig172885.4476.1|Name=mRNA_H-elongata_contig172885.4476.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig172885:1228..1341- (Himanthalia elongata Himel1 dioecious)
ATAGATATTTGGTCTGGGAATCATCCTTTTTATACGGGATCGCAAAGAAT
AATTGATACCGAAGGTCGAGTTCAACGGTTTTTTAGAAAGTATAATTTAA
ACGAATCCAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig172885:1228..1341-

>mRNA_H-elongata_contig172885.4476.1 ID=mRNA_H-elongata_contig172885.4476.1|Name=mRNA_H-elongata_contig172885.4476.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig172885:1228..1341- (Himanthalia elongata Himel1 dioecious)
ATAGATATTTGGTCTGGGAATCATCCTTTTTATACGGGATCGCAAAGAAT
AATTGATACCGAAGGTCGAGTTCAACGGTTTTTTAGAAAGTATAATTTAA
ACGAATCCAAATAAATAGATATTTGGTCTGGGAATCATCCTTTTTATACG
GGATCGCAAAGAATAATTGATACCGAAGGTCGAGTTCAACGGTTTTTTAG
AAAGTATAATTTAAACGAATCCAAATAA
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