mRNA_H-elongata_contig172663.4464.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172663.4464.1
Unique NamemRNA_H-elongata_contig172663.4464.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.020e-21
Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 1
Query:    7 EVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
            +V   P +VA   K+ + + WE+ M  E  G+   GTF    +D  P+  + VSSK  F WK++K  +++K KARLVAR F+Q   +DY    SP PS++SIK+++ VANE   ++ + DVKQ F  A LD D+
Sbjct:  523 DVESPPMTVAGVNKSVYREGWEQAMREEFDGHLGTGTFSF--VDGTPEGRRPVSSKWRFTWKTNKDGKIVKFKARLVARGFSQTPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDV 654          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A392PM14_9FABA (Reverse transcriptase (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392PM14_9FABA)

HSP 1 Score: 85.9 bits (211), Expect = 6.490e-18
Identity = 42/114 (36.84%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   67 WEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
            W   M  EL+   + GT+ L ++   P N K ++ K V+  K     E+ + KARLVA+ F QK GIDY E Y+P     +++++VG+AN N+W ++ +DVK  F+  PL  ++
Sbjct:   35 WTNAMEEELEAIEKNGTWSLTDL---PPNKKAIAVKWVYKIKMSPQGEITRHKARLVAKGFLQKEGIDYDEVYAPVARIETVRLIVGIANINNWSIHQMDVKCAFLNGPLSEEV 145          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A182H4X3_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H4X3_AEDAL)

HSP 1 Score: 88.2 bits (217), Expect = 1.180e-17
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   22 PTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
            PT+VA  +K D W +WE  M  E+   +  GT+ L ++   P     V+++ VF  K     E  + KARLVAR F+QKFG DY E YSP     +++ V+ +AN N   ++ +DV   F+   LD +I
Sbjct:  818 PTTVAEAKKRDDWSKWEAAMRDEMDSQSRNGTWRLTKL---PPGRTAVTNRWVFQIKRGLNGEPDRYKARLVARGFSQKFGFDYSETYSPVAKLDTLRTVLALANHNKMVVHQMDVSTAFLNGKLDEEI 943          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A392R7E7_9FABA (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392R7E7_9FABA)

HSP 1 Score: 82.8 bits (203), Expect = 1.700e-17
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   67 WEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLD 399
            W++ M  EL    +  T   +E+  +P + K ++ K VF  K +    V K KARL+AR F Q+ G+DY E YSP     ++++VV +AN  DW MY++DVK  F+  PL+
Sbjct:   39 WKQAMIEELTAIEKNQT---WEMVNLPVDKKAIAVKWVFKLKLNPDGSVAKYKARLMARGFLQREGLDYSEVYSPVARIETVRLVVAIANARDWPMYHLDVKSAFLNGPLE 146          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A409X4K8_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409X4K8_9AGAR)

HSP 1 Score: 85.9 bits (211), Expect = 7.360e-17
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   43 RKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHD 405
            RK   W +WE+ +  EL    + GT+ + +    P+N  +V SK V   K +   E+ K KARLVAR FTQ +GIDY   Y+P    S+ + V+ +AN N W +  +D    F+ APL  D
Sbjct:  385 RKRSDWPKWEEAIKKELLTLEKNGTWRIVKR---PENANVVDSKWVLRIKKNAAGEIDKYKARLVARGFTQVYGIDYDATYAPVARLSTFRYVIALANRNGWPIESIDFDSAFLNAPLGDD 502          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A8D8CEU4_CULPI (Copia protein (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8CEU4_CULPI)

HSP 1 Score: 82.0 bits (201), Expect = 8.640e-17
Identity = 41/129 (31.78%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   22 PTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
            P ++ + RK D WQ W+  +  E+  + +  T+ L ++   P+  K ++ K +F  K   + + ++ KARLVAR FTQ++G DY E YSP     ++++++ VAN+  ++++ +DVK  F+   L  +I
Sbjct:   17 PDTLEALRKRDDWQHWQAAVHEEMLSHQKNKTWTLTKL---PEGRKPITCKWIFKIKRSGSGDPVRYKARLVARGFTQRYGFDYLETYSPVARMDTVRMLLAVANQQRFKVHQMDVKTAFLNGTLQEEI 142          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A438HC12_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HC12_VITVI)

HSP 1 Score: 85.5 bits (210), Expect = 1.010e-16
Identity = 45/129 (34.88%), Postives = 75/129 (58.14%), Query Frame = 1
Query:   22 PTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
            P SV+  +++   ++W + M  E++   + G + L E+   PK+VK +  K +F  K D T  +++ KARLVA+ FTQK GIDY+E +SP  S  S +I++ +    D  ++ +DVK  F+   +D  I
Sbjct:  651 PISVSQVKQSSDSEKWIEAMKDEMKSMKDNGVWDLVEL---PKDVKPIGCKWIFKTKRDSTGNIVRYKARLVAKSFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKIAFLNGNIDETI 776          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: A0A392M398_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392M398_9FABA)

HSP 1 Score: 81.3 bits (199), Expect = 1.030e-16
Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query:   67 WEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
            W+K M  EL+   +  T   +E+    +NV+ +  K VF  K +    V K KARLVAR F QK GIDY E ++P     +I+IVV +AN  DW +Y++DVK  F+  PL+ ++
Sbjct:   45 WKKAMIDELKSIEKNQT---WELVNPTENVRTIDLKWVFKIKLNPDGGVSKHKARLVARGFLQKKGIDYNEVFAPVARHETIRIVVAIAN--DWPLYHLDVKSTFLNGPLEENV 153          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: UPI001A4DFE48 (uncharacterized protein n=1 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A4DFE48)

HSP 1 Score: 84.7 bits (208), Expect = 1.840e-16
Identity = 43/118 (36.44%), Postives = 71/118 (60.17%), Query Frame = 1
Query:   49 ADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDH 402
            +D  Q+W++ +  EL G    GT   +EI  +P N K+V+SK V   K D     ++ KARLVAR FTQ+ GID++E ++P    S+I+ ++ +A E DW ++ +D+   ++ + L H
Sbjct:  198 SDEAQQWQEAICKELDGLEAMGT---WEIVDIPPNTKLVNSKIVLHLKLDADGVPVRHKARLVARGFTQREGIDFEETFAPVAPLSAIRALLSLAVERDWEVHQLDITMAYLNSTLKH 312          
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Match: UPI001A586D17 (uncharacterized protein n=21 Tax=Ustilago hordei TaxID=120017 RepID=UPI001A586D17)

HSP 1 Score: 84.3 bits (207), Expect = 2.600e-16
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   67 WEKTMTGELQGYAEAGTFMLYEIDYVPKNVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPSASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI 408
            WE+ M  EL G    GT   +EI  +PK    V ++ V   K+D      K KARLVAR FTQ+ GIDY E ++P     SI+ V+ VA   DW M  +DVKQ ++ + + HD+
Sbjct:  562 WEEAMRKELDGLEAMGT---WEIVDLPKGANTVDTRWVLKIKTDANLVPTKFKARLVARGFTQREGIDYTEVFAPVAPIQSIRGVIAVAAVRDWEMDSIDVKQAYLNSTIHHDV 672          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172663.4464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVQ8_9PHAE1.020e-2141.04Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A392PM14_9FABA6.490e-1836.84Reverse transcriptase (Fragment) n=1 Tax=Trifolium... [more]
A0A182H4X3_AEDAL1.180e-1737.21Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A392R7E7_9FABA1.700e-1738.74Retrovirus-related pol polyprotein from transposon... [more]
A0A409X4K8_9AGAR7.360e-1738.02Integrase catalytic domain-containing protein (Fra... [more]
A0A8D8CEU4_CULPI8.640e-1731.78Copia protein (Fragment) n=1 Tax=Culex pipiens Tax... [more]
A0A438HC12_VITVI1.010e-1634.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A392M398_9FABA1.030e-1640.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001A4DFE481.840e-1636.44uncharacterized protein n=1 Tax=Ustilago hordei Ta... [more]
UPI001A586D172.600e-1641.23uncharacterized protein n=21 Tax=Ustilago hordei T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172663contigH-elongata_contig172663:3..410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score85.5
Seed ortholog evalue2.1e-14
Seed eggNOG ortholog7070.TC001424-PA
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.9938471-CDS-H-elongata_contig172663:2..4101622930004.9938471-CDS-H-elongata_contig172663:2..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172663 3..410 -
1691679242.4193044-CDS-H-elongata_contig172663:2..4101691679242.4193044-CDS-H-elongata_contig172663:2..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172663 3..410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172663.4464.1prot_H-elongata_contig172663.4464.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172663 3..410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172663.4464.1

>prot_H-elongata_contig172663.4464.1 ID=prot_H-elongata_contig172663.4464.1|Name=mRNA_H-elongata_contig172663.4464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
VEEVGPAPTSVASPRKADHWQEWEKTMTGELQGYAEAGTFMLYEIDYVPK
NVKIVSSKRVFAWKSDKTREVIKPKARLVARDFTQKFGIDYQEFYSPTPS
ASSIKIVVGVANENDWRMYYVDVKQDFVKAPLDHDI
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mRNA from alignment at H-elongata_contig172663:3..410-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172663.4464.1 ID=mRNA_H-elongata_contig172663.4464.1|Name=mRNA_H-elongata_contig172663.4464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig172663:3..410- (Himanthalia elongata Himel1 dioecious)
GTAGAGGAGGTTGGGCCAGCGCCCACTAGCGTGGCGTCCCCTAGGAAGGC TGATCATTGGCAAGAGTGGGAGAAGACAATGACTGGGGAGTTGCAGGGGT ATGCCGAGGCAGGTACATTTATGTTATACGAGATTGACTATGTGCCAAAG AATGTCAAAATAGTGAGTTCTAAGCGAGTTTTCGCGTGGAAATCCGATAA GACGAGAGAAGTAATCAAGCCGAAAGCCAGGCTTGTTGCAAGAGATTTCA CGCAGAAGTTCGGTATCGATTACCAAGAGTTTTATTCACCCACACCGTCT GCTTCATCGATCAAAATTGTCGTAGGCGTAGCTAACGAGAACGACTGGAG GATGTATTATGTCGATGTTAAACAAGATTTCGTCAAGGCACCCCTAGACC ATGATATT
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Coding sequence (CDS) from alignment at H-elongata_contig172663:3..410-

>mRNA_H-elongata_contig172663.4464.1 ID=mRNA_H-elongata_contig172663.4464.1|Name=mRNA_H-elongata_contig172663.4464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig172663:3..410- (Himanthalia elongata Himel1 dioecious)
GTAGAGGAGGTTGGGCCAGCGCCCACTAGCGTGGCGTCCCCTAGGAAGGC
TGATCATTGGCAAGAGTGGGAGAAGACAATGACTGGGGAGTTGCAGGGGT
ATGCCGAGGCAGGTACATTTATGTTATACGAGATTGACTATGTGCCAAAG
AATGTCAAAATAGTGAGTTCTAAGCGAGTTTTCGCGTGGAAATCCGATAA
GACGAGAGAAGTAATCAAGCCGAAAGCCAGGCTTGTTGCAAGAGATTTCA
CGCAGAAGTTCGGTATCGATTACCAAGAGTTTTATTCACCCACACCGTCT
GCTTCATCGATCAAAATTGTCGTAGGCGTAGCTAACGAGAACGACTGGAG
GATGTATTATGTCGATGTTAAACAAGATTTCGTCAAGGCACCCCTAGACC
ATGATATTGTAGAGGAGGTTGGGCCAGCGCCCACTAGCGTGGCGTCCCCT
AGGAAGGCTGATCATTGGCAAGAGTGGGAGAAGACAATGACTGGGGAGTT
GCAGGGGTATGCCGAGGCAGGTACATTTATGTTATACGAGATTGACTATG
TGCCAAAGAATGTCAAAATAGTGAGTTCTAAGCGAGTTTTCGCGTGGAAA
TCCGATAAGACGAGAGAAGTAATCAAGCCGAAAGCCAGGCTTGTTGCAAG
AGATTTCACGCAGAAGTTCGGTATCGATTACCAAGAGTTTTATTCACCCA
CACCGTCTGCTTCATCGATCAAAATTGTCGTAGGCGTAGCTAACGAGAAC
GACTGGAGGATGTATTATGTCGATGTTAAACAAGATTTCGTCAAGGCACC
CCTAGACCATGATATT
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