mRNA_H-elongata_contig172621.4463.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig172621.4463.1
Unique NamemRNA_H-elongata_contig172621.4463.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: D7G858_ECTSI (Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G858_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.810e-22
Identity = 55/93 (59.14%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:   40 PRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGD----------DVKEAFTGRGVAVNSGE 288
            P   EKVPVWTADYVLGSYGTGAVMAVPAHDERD AFA+ F+L +RRVV+P+                        +V EAFTGRGVA+NSGE
Sbjct:  331 PITGEKVPVWTADYVLGSYGTGAVMAVPAHDERDLAFARTFELPVRRVVKPSGGKXXXXXXXXXXXXXXXXXXXXXEVVEAFTGRGVAINSGE 423
[Close]
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A7C5QST9_9CHLR (Leucine--tRNA ligase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C5QST9_9CHLR)

HSP 1 Score: 99.4 bits (246), Expect = 3.390e-22
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:   25 YVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSG 285
            Y ++P    E++P+W ADYVL  YGTGA+MAVPAHDERD+AFA+A  L IR V++P+ P  G E   EGG+ + EA+TG GV VNSG
Sbjct:  308 YAINPANG-ERIPIWVADYVLVGYGTGAIMAVPAHDERDYAFARAHALPIRVVIQPSGPPEG-ESRKEGGEALAEAYTGEGVLVNSG 392
[Close]
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A7S3BNW9_9VIRI (Leucine--tRNA ligase n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BNW9_9VIRI)

HSP 1 Score: 95.5 bits (236), Expect = 7.040e-21
Identity = 50/81 (61.73%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:   40 PRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNS 282
            P   E VPVW ADYVLGSYGTGA+MAVPAHD RD  FA+A D+ ++ VVRPA  N   E  +EGG    EAF G GV VNS
Sbjct:    5 PATGEGVPVWVADYVLGSYGTGAIMAVPAHDARDLEFARAMDIAVKEVVRPADANENYESPAEGG----EAFGGAGVMVNS 81
[Close]
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A7C3KJZ4_9CHLR (Leucine--tRNA ligase n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C3KJZ4_9CHLR)

HSP 1 Score: 95.1 bits (235), Expect = 1.030e-20
Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:   25 YVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAA----PNAGAEGESEGGDDVKEAFTGRGVAVNSG 285
            Y ++P    E++P+W ADYVL SYGTGA+MAVPAHDERDFAFA+ +DL I  V+RP      P+    G+   G ++KEA+ G GV VNSG
Sbjct:  333 YAINPVNG-ERIPIWIADYVLMSYGTGAIMAVPAHDERDFAFAKKYDLPIVEVIRPEPSPLHPSPSGRGDGGEGGELKEAYIGAGVMVNSG 422
[Close]
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A535ZTQ2_9CHLR (Leucine--tRNA ligase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535ZTQ2_9CHLR)

HSP 1 Score: 94.7 bits (234), Expect = 1.410e-20
Identity = 49/79 (62.03%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   52 EKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSGE 288
            EKVP+W ADYVL +YGTGA+MAVPAHDERDFAFAQ F L IR V+RP        GE    DD+ EA+ G G+ VNSG+
Sbjct:  326 EKVPIWVADYVLATYGTGAIMAVPAHDERDFAFAQKFRLPIREVIRPPG------GED---DDLHEAYVGPGLMVNSGQ 395
[Close]
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A8B5WZB2_9SPIO (Leucine--tRNA ligase n=1 Tax=Spirochaetaceae bacterium TaxID=1898206 RepID=A0A8B5WZB2_9SPIO)

HSP 1 Score: 94.4 bits (233), Expect = 1.920e-20
Identity = 49/79 (62.03%), Postives = 56/79 (70.89%), Query Frame = 1 
Query:   52 EKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSGE 288
            EK+P+W +DY+L SYGTGA+MAVPAHDERDF FA  F L I  VV P A  A   G  EGG   K +FTG GVA+NSGE
Sbjct:  328 EKIPIWISDYILISYGTGAIMAVPAHDERDFEFATKFSLPIVEVVAPPAARAEGSGLPEGG---KRSFTGDGVAINSGE 403
[Close]
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A8J5XLP7_DIALT (Leucine--tRNA ligase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XLP7_DIALT)

HSP 1 Score: 94.4 bits (233), Expect = 1.930e-20
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:   40 PRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVV-RPAAPNAGAEGESEG---GDDVKEAFTGRGVAVNSGE 288
            P   E +PVW +DYV+G YGTGAVMAVPAHDERDFAFAQAF L +++V+ RPA   AGA+GE+ G   G  + +A T  GV VNSGE
Sbjct:  378 PLTGEPLPVWVSDYVIGGYGTGAVMAVPAHDERDFAFAQAFGLPVKQVIARPAG--AGADGEAGGALDGGALAQALTEDGVLVNSGE 462
[Close]
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A2M7XEP6_9BACT (Leucine--tRNA ligase n=1 Tax=Candidatus Uhrbacteria bacterium CG_4_9_14_3_um_filter_50_9 TaxID=1975035 RepID=A0A2M7XEP6_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 2.620e-20
Identity = 53/96 (55.21%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:   22 SYVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAA------PNAG-AEGESEGGDDVKEAFTGRGVAVNSGE 288
            +Y ++P   + K+PVW ADYVLG YGTGA+MAVPAHDERDFAFA+ F+L I +VV P        P+ G + G       V E FTG GVAVNSGE
Sbjct:  311 AYAINPVTGK-KIPVWVADYVLGGYGTGAIMAVPAHDERDFAFAKMFELPIVKVVEPEVLQNIIHPDVGISHGMQSDVKVVHECFTGEGVAVNSGE 405
[Close]
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: A0A535LZS3_9CHLR (Leucine--tRNA ligase (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535LZS3_9CHLR)

HSP 1 Score: 93.6 bits (231), Expect = 2.950e-20
Identity = 49/79 (62.03%), Postives = 57/79 (72.15%), Query Frame = 1 
Query:   52 EKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSGE 288
            EKVP+W ADYVL +YGTGA+MAVPAHDERDFAFAQ F L IR V+RP        GE    DD+ EA+ G G+ VNSG+
Sbjct:  326 EKVPIWVADYVLVTYGTGAIMAVPAHDERDFAFAQKFRLPIREVIRPPG------GED---DDLHEAYVGPGLMVNSGQ 395
[Close]
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Match: K0QYF4_THAOC (Leucine--tRNA ligase n=3 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QYF4_THAOC)

HSP 1 Score: 93.6 bits (231), Expect = 3.600e-20
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:   40 PRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDLGIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSGE 288
            P   EKVP+W  DYVLGSYGTGAVMAVPAHDERDF FAQ F+L ++ VV P         + +G  + +EAFT +GV VNSGE
Sbjct:  427 PLTNEKVPIWIGDYVLGSYGTGAVMAVPAHDERDFEFAQKFELDVKWVVEP---------KGDGELNKEEAFTEQGVNVNSGE 500
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig172621.4463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G858_ECTSI1.810e-2259.14Leucine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7C5QST9_9CHLR3.390e-2257.47Leucine--tRNA ligase n=1 Tax=Anaerolineae bacteriu... [more]
A0A7S3BNW9_9VIRI7.040e-2161.73Leucine--tRNA ligase n=1 Tax=Prasinoderma singular... [more]
A0A7C3KJZ4_9CHLR1.030e-2053.85Leucine--tRNA ligase n=1 Tax=Anaerolineae bacteriu... [more]
A0A535ZTQ2_9CHLR1.410e-2062.03Leucine--tRNA ligase n=1 Tax=Chloroflexi bacterium... [more]
A0A8B5WZB2_9SPIO1.920e-2062.03Leucine--tRNA ligase n=1 Tax=Spirochaetaceae bacte... [more]
A0A8J5XLP7_DIALT1.930e-2060.92Leucine--tRNA ligase n=1 Tax=Diacronema lutheri Ta... [more]
A0A2M7XEP6_9BACT2.620e-2055.21Leucine--tRNA ligase n=1 Tax=Candidatus Uhrbacteri... [more]
A0A535LZS3_9CHLR2.950e-2062.03Leucine--tRNA ligase (Fragment) n=1 Tax=Chloroflex... [more]
K0QYF4_THAOC3.600e-2059.04Leucine--tRNA ligase n=3 Tax=Thalassiosira oceanic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig172621contigH-elongata_contig172621:186..479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue9.5e-19
Seed eggNOG ortholog227086.JGI_V11_57435
KEGG rclassRC00055,RC00523
KEGG koko:K01164,ko:K01869
KEGG ReactionR03657
KEGG Pathwayko00970,ko03008,ko03013,map00970,map03008,map03013
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000372,GO:0000375,GO:0000376,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004812,GO:0004823,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006139,GO:0006396,GO:0006399,GO:0006412,GO:0006418,GO:0006429,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032543,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:0090304,GO:0097159,GO:0140053,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.leucyl-tRNA aminoacylation
EggNOG OGsCOG0495@1,KOG0435@2759
EC3.1.26.5,6.1.1.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03009,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size276
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.8996735-UTR-H-elongata_contig172621:185..2031622930004.8996735-UTR-H-elongata_contig172621:185..203Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172621 186..203 +
1691679242.3974745-UTR-H-elongata_contig172621:185..2031691679242.3974745-UTR-H-elongata_contig172621:185..203Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig172621 186..203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.9178448-CDS-H-elongata_contig172621:203..4791622930004.9178448-CDS-H-elongata_contig172621:203..479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172621 204..479 +
1691679242.4107482-CDS-H-elongata_contig172621:203..4791691679242.4107482-CDS-H-elongata_contig172621:203..479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig172621 204..479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig172621.4463.1prot_H-elongata_contig172621.4463.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig172621 204..479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig172621.4463.1

>prot_H-elongata_contig172621.4463.1 ID=prot_H-elongata_contig172621.4463.1|Name=mRNA_H-elongata_contig172621.4463.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MSYVLSPPRAREKVPVWTADYVLGSYGTGAVMAVPAHDERDFAFAQAFDL
GIRRVVRPAAPNAGAEGESEGGDDVKEAFTGRGVAVNSGEVS
back to top

mRNA from alignment at H-elongata_contig172621:186..479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig172621.4463.1 ID=mRNA_H-elongata_contig172621.4463.1|Name=mRNA_H-elongata_contig172621.4463.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig172621:186..479+ (Himanthalia elongata Himel1 dioecious)
AGAGAAACGACATGTCCTATGTCATATGTCCTATCACCTCCCCGCGCGCG
CGAAAAGGTGCCAGTATGGACGGCAGACTACGTGCTCGGGAGCTACGGTA
CCGGGGCGGTGATGGCGGTACCGGCTCATGACGAGCGAGACTTTGCGTTC
GCGCAGGCCTTTGACCTAGGGATTCGGCGGGTGGTGCGGCCCGCTGCTCC
GAATGCGGGGGCAGAGGGCGAAAGCGAGGGAGGAGATGACGTAAAGGAGG
CTTTTACCGGAAGGGGTGTCGCGGTCAACAGCGGCGAGGTGAGC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig172621:186..479+

>mRNA_H-elongata_contig172621.4463.1 ID=mRNA_H-elongata_contig172621.4463.1|Name=mRNA_H-elongata_contig172621.4463.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig172621:186..479+ (Himanthalia elongata Himel1 dioecious)
ATGTCATATGTCCTATCACCTCCCCGCGCGCGCGAAAAGGTGCCAGTATG
GACGGCAGACTACGTGCTCGGGAGCTACGGTACCGGGGCGGTGATGGCGG
TACCGGCTCATGACGAGCGAGACTTTGCGTTCGCGCAGGCCTTTGACCTA
GGGATTCGGCGGGTGGTGCGGCCCGCTGCTCCGAATGCGGGGGCAGAGGG
CGAAAGCGAGGGAGGAGATGACGTAAAGGAGGCTTTTACCGGAAGGGGTG
TCGCGGTCAACAGCGGCGAGGTGAGCATGTCATATGTCCTATCACCTCCC
CGCGCGCGCGAAAAGGTGCCAGTATGGACGGCAGACTACGTGCTCGGGAG
CTACGGTACCGGGGCGGTGATGGCGGTACCGGCTCATGACGAGCGAGACT
TTGCGTTCGCGCAGGCCTTTGACCTAGGGATTCGGCGGGTGGTGCGGCCC
GCTGCTCCGAATGCGGGGGCAGAGGGCGAAAGCGAGGGAGGAGATGACGT
AAAGGAGGCTTTTACCGGAAGGGGTGTCGCGGTCAACAGCGGCGAGGTGA
GC
back to top