mRNA_H-elongata_contig17199.4431.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17199.4431.1
Unique NamemRNA_H-elongata_contig17199.4431.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Match: D8LGT9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT9_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 5.660e-101
Identity = 173/317 (54.57%), Postives = 216/317 (68.14%), Query Frame = 1
Query:    7 SENLNLTKANLVAFSSRIIAAARAIESRRPDRLFNDWFAELLPGASLNVEAIATSTEPGSNCPKQSADGTDVSAPERDSA----SRRFALRTRFGDDFFEDCTLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAGASLRTVSVGETLSG--------VGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWILEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAECLKRSKKIDDDILRTWKWGSDDPQASFQCFFPAGWSFKYVPYATPGEFPDGAGYSLGYKGRK-AYVIGY 918
            S NL+LT ++ VA+SSR+IAAARA+ESRR DRLF+D +AELL G    ++ +    +  S+ P   A     +A   D       RR A+RTRF DDFFEDC   P+ IKQIVSLGAGMDTRGLRLRAS  T VFE+DQALVL VK ++L  A+     V   L+G        VG+  V+ VEADL    W+GEL +AGFDP+LPSAWILEGLTMYLEE+E+  LL+++A L S GSAFCATC+SAE ++R++     ++  WKWGSD+PQA F+  FP GWSF  V   TPGEFP GA Y +G+ G+  AYVIGY
Sbjct:   69 SSNLDLTSSDTVAYSSRMIAAARALESRRRDRLFDDPYAELLAGPDA-MQTVEDKAQEESSLPPLEATAAATAAAASDGVPRDVQRRLAIRTRFCDDFFEDCA-GPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKGALLTQAAAAD-EVAAALAGFRERRDGGVGQGRVVPVEADLSVEGWQGELFEAGFDPSLPSAWILEGLTMYLEEKELVALLRVLASLSSPGSAFCATCVSAESVERAQNSASPLMGRWKWGSDNPQAFFEANFPEGWSFNGVTCGTPGEFPQGADYGVGFVGKAPAYVIGY 382          
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Match: D7FXP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP3_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 2.230e-69
Identity = 127/231 (54.98%), Postives = 155/231 (67.10%), Query Frame = 1
Query:  253 RFALRTRFGDDFFEDCTLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAGASLRTVSVGETLSG--------VGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWILEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAECLKRSKKIDDDILRTWKWGSDDPQASFQCFFPAGWSFKYVPYATPGEFPDGAGYSLGYKGRKA-YVIGY 918
            R A+RTRF DDFFEDC   P+ IKQIVSLGAGMDTRGLR RAS  T VFE+DQALVL VK ++L  A+     V   L+G        VG+  V+ V+A L    W+GEL +AG DP+LPSAWILEGL MYLEE+E+  LL+++A L S GSAFCAT +SAE ++R+       +  WK GSD P A F+   P GWSF  V   TPGEFP+GA Y + + G+ A YVIGY
Sbjct:   59 RLAIRTRFCDDFFEDCA-GPRGIKQIVSLGAGMDTRGLRRRASGDTKVFEVDQALVLRVKSALLTQAAAAD-EVAAALAGFRERRDGGVGQGRVVPVQAALSVEGWQGELFEAGSDPSLPSAWILEGLNMYLEEKELVALLRVLASLSSPGSAFCATYVSAESVERTHISASPPMGRWKRGSDKPPAFFEANSPQGWSFNGVTCGTPGEFPEGADYGVDFVGKAAAYVIGY 287          
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Match: A0A4Q9J1I0_9CYAN (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Westiellopsis TaxID=221285 RepID=A0A4Q9J1I0_9CYAN)

HSP 1 Score: 129 bits (325), Expect = 3.780e-32
Identity = 87/251 (34.66%), Postives = 132/251 (52.59%), Query Frame = 1
Query:   34 NLVAFSSRIIAAARAIESRRPDRLFNDWFAELLPGASLNVEAIATSTEPGSNCPKQSADGTDVSAPERDSASRRFALRTRFGDDFFEDCTLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAGASLRTVSVGETLSGVGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWILEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAECLKRSKKIDDDILRTWKWGSDDPQ 786
            +LV+ SSR++AA RAIE++RPD LF D  A +L G  +  E IA S +      +    GT V            A+RTRF DDF          I+Q+V LGAGMDTR  RL     T ++E+D+  VL  K S+L     R                  +E D+ ++ W  +L+ +G+ P +PS W++EG   YL E ++ +LL+ + KL + GS F A  I++  + +S    D++ + WK+G D+P+
Sbjct:    3 DLVSLSSRMMAAVRAIETQRPDGLFKDPLAAILAGDDIIAE-IAPSAQ------QYEDQGTPV-----------VAVRTRFFDDFLMSQV---DQIRQVVILGAGMDTRAFRLPWQRDTHLYELDRKEVLQYKESVLGNIQSRCTRHS-------------IEVDIKES-WADKLIGSGYLPEIPSVWVMEGFVYYLSETQVHELLKTITKLSAPGSWFLADLINSFFVSKST---DELSKHWKYGCDEPE 215          
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Match: UPI00168372B7 (SAM-dependent methyltransferase n=1 Tax=Calothrix sp. FACHB-156 TaxID=2692779 RepID=UPI00168372B7)

HSP 1 Score: 127 bits (319), Expect = 2.660e-31
Identity = 95/280 (33.93%), Postives = 138/280 (49.29%), Query Frame = 1
Query:   40 VAFSSRIIAAARAIESRRPDRLFNDWFAELLPGASLNVEAIATSTEPGSNCPKQSADGTDVSAPERDSASRRF-ALRTRFGDDFFEDCTLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAGASLRTVSVGETLSGVGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWILEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAECLKRSKKIDDDILRTWKWGSDDPQASFQCFFPAGWSFKYVPYATPGEFPDGAGY 876
            V+F++++IAA RAIES+RP+ LF+D  A  L G    +EA     E                  E D   R F ++R RF DDF    +    +I+QIV LGAGMDTR  RL     T ++EIDQ  V+  K S+L G + +      T+S            DL ++ W   L++ GF  + P+ WILEG   YL    +E LL+ +  L + GS  CA  I++     S    D+  + W++G D+P++ F  +   GW    +    PGE  DGA +
Sbjct:    9 VSFTAKVIAAGRAIESQRPNALFSDPLAAKLAGQEA-IEAALPKVE------------------EYDKQGRPFLSVRARFFDDFINKHS---DNIRQIVILGAGMDTRAFRLNWQPNTHIYEIDQQDVILYKESVLTGINSQCAR--HTIS-----------TDLKESHWTELLIKEGFKTSEPTIWILEGFLYYLNAMAVENLLKNIQVLSAKGSYLCADVINSLICNGS----DEWAKYWQFGCDEPESFFATY---GWQASAI---QPGE--DGASF 241          
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Match: A0A7C9TT70_9CYAN (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9TT70_9CYAN)

HSP 1 Score: 127 bits (319), Expect = 2.920e-31
Identity = 89/260 (34.23%), Postives = 131/260 (50.38%), Query Frame = 1
Query:   34 NLVAFSSRIIAAARAIESRRPDRLFNDWFAELLPGASLNVEAIATSTEPGSNCPKQSADGTDVSAPERDSASRRFALRTRFGDDFFEDCTLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAGASLRTVSVGETLSGVGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWILEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAECLKRS------KKIDDDILRTWKWGSDDPQASF 795
            ++V+ SS+++AA RA+E++RPDRLF D +A  L G+ +  +      E G                      R   +RTRF DDF          I QIV LGAGMDTR  RL     T ++E+D+  VL  K SIL  +               KA  I V ADLGQA W  +LL  GF P  P+ W+LEGL  YL E E++ LL+ +++L + GS   A  ++ + ++ +        + D   ++W++G D+P+  F
Sbjct:    6 DIVSRSSQLMAAIRALETKRPDRLFEDPYAAQLAGSEIIAQVEPKLKEYG---------------------IRYVEVRTRFFDDFMVSSA---SQIGQIVILGAGMDTRAFRLPWPPETRLYELDRLEVLQKKESILQDSPA-------------KALRICVAADLGQA-WSSQLLATGFQPEQPTLWLLEGLIYYLNETEVDLLLKTISELSAIGSCLGADLLNVKLIQEAVTEWSQSYLGDLPEKSWRYGCDEPEKLF 227          
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Match: UPI001F049D51 (SAM-dependent methyltransferase n=1 Tax=Streptomyces sp. MUM 178J TaxID=2791991 RepID=UPI001F049D51)

HSP 1 Score: 127 bits (318), Expect = 7.050e-31
Identity = 94/259 (36.29%), Postives = 132/259 (50.97%), Query Frame = 1
Query:   49 SSRIIAAARAIESRRPDRLFNDWFAELLPG--ASLNVEAIATSTEPGSNCPKQSADGTDVSAPERDSASRRF---ALRTRFGDDFFEDCTLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAGASLRTVSVGETLSGVGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWILEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAE--CLKRSKKIDDDILR---TWKWGSDDPQASF 795
            +S + AA RA E+RRPDRL+ D +AE L G      +  +   T   +  P  +A   D +   R    R     A+RTR+ DD      L  + + QIVS  +GMD R  RL    G   FEID+A VL  KR  LA A             V +A    V ADL   +WE  L+ AG+DPALPSAW+LEG+  YL E+ + +LL  + ++ + GS   A  ++A    L +++   D   R    W++G+DDP+A F
Sbjct:   11 TSLLTAAMRAEETRRPDRLYTDPYAETLCGDLGPALLAELQDGTHGSAPAPVPAAGAGDRNG--RHPMPRPLDVNAIRTRYFDDRL---LLAARDVPQIVSAASGMDARAYRLHWPPGLRYFEIDRAAVLAYKRDRLADA-------------VPRAEHRAVAADLTSPDWEARLVDAGYDPALPSAWLLEGMLYYLPEEAVCRLLDRIRRITAPGSVLAADLVNAAGLTLPQARGQLDVFARWGCPWQYGADDPEALF 251          
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Match: A0A2N3VS80_9ACTN (S-adenosyl-L-methionine-dependent methyltransferase n=4 Tax=Streptomyces TaxID=1883 RepID=A0A2N3VS80_9ACTN)

HSP 1 Score: 127 bits (319), Expect = 8.940e-31
Identity = 99/281 (35.23%), Postives = 141/281 (50.18%), Query Frame = 1
Query:   58 IIAAARAIESRRPDRLFNDWFAELL---PGASLNVEAIATSTEPGSNCPKQSADGTDVSAPERDSASRRFALRTRFGDDFFEDCTLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAGASLRTVSVGETLSGVGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWILEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAECLKRSK-----KIDDDILRTWKWGSDDPQASFQCFFPAGWSFKYV----PYATPGEFPD 864
            + AA RA E+RRPDR++ D +A+ L    G  L  E I  +T P        A  T  S P+ +      A+RTRF DD+ ++    P  ++QIV   AGMD+R  RL    G   +E+D+  VL  K+  L G S RT     T           V  DL   +WE +LL AG+DPALPS W+LEGL  Y+ EQ+  ++L+ VA   + GS   A  ++A  L   +     +I       W +G+D+P+A F  F   G+S + +    P A  G +PD
Sbjct:   52 LTAALRAAETRRPDRIYQDPYADALCGETGPELLAE-IRQATFPAD------ASRTLPSTPDYN------AIRTRFFDDYLQEAAREP-GMRQIVLAPAGMDSRAYRLDWPEGLRYYEVDRPAVLAYKKDRLEGVSPRTDH--RT-----------VAVDLTSPDWEDDLLAAGYDPALPSTWLLEGLLYYIPEQDTHRILRRVADFSAPGSRIAADLVNAAALTLPQMRGLLEIFAGWGCPWLFGTDEPEALFDSF---GFSVEALQPGEPGADFGRWPD 302          
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Match: A0A7C9TUH9_9CYAN (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9TUH9_9CYAN)

HSP 1 Score: 125 bits (313), Expect = 2.000e-30
Identity = 92/255 (36.08%), Postives = 132/255 (51.76%), Query Frame = 1
Query:   34 NLVAFSSRIIAAARAIESRRPDRLFNDWFAELLPGASLNVEAIATSTEPGSNCPKQSADGTDVSAPERDSASRRFA-LRTRFGDDFFEDCTLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAGASLRTVSVGETLSGVGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWILEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAECLKRSKKIDDDILRTWKWGSDDPQASF 795
            ++V+ SS+ +AA RA+E++RPDRLF+D +AE L GA +  +             K    G D    ER    R FA +RTRF DDF      P   I QIV LGAGMDTR  RL     T ++E+D+  VL  K SIL                  K   I V A+LGQ  W  +L+ AGF    P+ W+LEG   YL++ E+  LL  +++L + GS+     I+   +K  ++  +++ R W++G D P+  F
Sbjct:    6 DIVSRSSQFMAAVRALETKRPDRLFDDPYAERLAGAEIIAQV------------KPILKGAD----ER---GRPFAAVRTRFFDDFLFSLASP---INQIVILGAGMDTRAFRLPWHPETCIYELDRPEVLQKKESILQDTPA-------------KCQRICVAANLGQL-WYSQLIAAGFQAEKPALWLLEGFLYYLKDTEVYSLLNQISELSAIGSSLGTDLIN---IKMLQEAGNELSRRWRYGCDRPEELF 221          
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Match: UPI00036327E6 (SAM-dependent methyltransferase n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI00036327E6)

HSP 1 Score: 124 bits (311), Expect = 3.490e-30
Identity = 89/269 (33.09%), Postives = 131/269 (48.70%), Query Frame = 1
Query:   34 NLVAFSSRIIAAARAIESRRPDRLFNDWFAELLPGASLNVEAIATSTEPGSNCPKQSADGTDVSAPERDSASRRFALRTRFGDDFFEDCTLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAGASLRTVSVGETLSGVGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWILEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAECLKRSKKIDDDILRTWKWGSDDPQASFQCFFPAGWSFKYVPY 840
            N V+ +SR +AA RAIE +RPDRLF+D  AE L GA +  E    + E                    D      A+RTRF DDF         SI+Q+V LGAGMDTR  RL     T ++EIDQ  V+ +K S+L           ++   +    VI ++    +  W  +LLQ GF+   PS W+LEG+  YL + +   LL+ +  L + GS   A  ++    ++ +K D+ + + W +G D+P+  F  F   GW    V +
Sbjct:    3 NKVSLTSRYMAAVRAIEHQRPDRLFSDPLAEKLAGAEIIAEIAPRAQE------------------YEDRGRPVVAVRTRFFDDFLMSSA---SSIRQVVILGAGMDTRAFRLPWHPDTYLYEIDQPDVIQLKESLL-----------DSTPAICHRQVIPIDL---RESWSEKLLQKGFETKSPSIWLLEGVLYYLTKTDACDLLKTITDLSTDGSFLGADVLN----EKMQKSDNGLAKYWLFGFDEPEKLFASF---GWQADVVQF 229          
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Match: E0UMT5_GLOV7 (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Gloeothece verrucosa (strain PCC 7822) TaxID=497965 RepID=E0UMT5_GLOV7)

HSP 1 Score: 124 bits (311), Expect = 3.920e-30
Identity = 90/253 (35.57%), Postives = 128/253 (50.59%), Query Frame = 1
Query:   40 VAFSSRIIAAARAIESRRPDRLFNDWFAELLPGASLNVEAIATSTEPGSNCPKQSADGTDVSAPERDSASRRF-ALRTRFGDDFFEDCTLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAGASLRTVSVGETLSGVGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWILEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAECLKRSKKIDDDILRTWKWGSDDPQASF 795
            V F+++++AAARAIESRRP+ LF D FAELL GA     AI                       E +   R F A+RTRF DDF  + +      +Q++ +G+GMDTR  RL   + T V+EIDQA VL  K+S L+G + +     + L          + ADL +  W+  LL  G+ P+ PS W+LEGL  YL + E+E LL  +  L   GS   A  ++      S    D   + W+   +DP++ F
Sbjct:    9 VGFTAKVMAAARAIESRRPNALFIDPFAELLAGAEAISSAIPR-------------------LEEYEKQGRPFIAVRTRFFDDFLLNHS---SCCRQVIIVGSGMDTRAFRLNWKSDTHVYEIDQASVLQYKQSCLSGMAPQC---HQHL----------IYADLRETLWQKLLLCQGYQPSQPSLWLLEGLLYYLNQDEVENLLVTINHLSVVGSGLAADLMNPVIANGS----DQWAKYWRSSCEDPESLF 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17199.4431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT9_ECTSI5.660e-10154.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXP3_ECTSI2.230e-6954.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4Q9J1I0_9CYAN3.780e-3234.66S-adenosyl-L-methionine-dependent methyltransferas... [more]
UPI00168372B72.660e-3133.93SAM-dependent methyltransferase n=1 Tax=Calothrix ... [more]
A0A7C9TT70_9CYAN2.920e-3134.23S-adenosyl-L-methionine-dependent methyltransferas... [more]
UPI001F049D517.050e-3136.29SAM-dependent methyltransferase n=1 Tax=Streptomyc... [more]
A0A2N3VS80_9ACTN8.940e-3135.23S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7C9TUH9_9CYAN2.000e-3036.08S-adenosyl-L-methionine-dependent methyltransferas... [more]
UPI00036327E63.490e-3033.09SAM-dependent methyltransferase n=1 Tax=Pleurocaps... [more]
E0UMT5_GLOV73.920e-3035.57S-adenosyl-L-methionine-dependent methyltransferas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17199contigH-elongata_contig17199:4074..7273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.5
Seed ortholog evalue1.1e-82
Seed eggNOG ortholog2880.D8LGT9
EggNOG free text desc.Leucine carboxyl methyltransferase
EggNOG OGs2QRNU@2759,COG3315@1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons7
Model size927
Cds size927
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930001.306628-CDS-H-elongata_contig17199:4073..42051622930001.306628-CDS-H-elongata_contig17199:4073..4205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 4074..4205 +
1691679241.1033785-CDS-H-elongata_contig17199:4073..42051691679241.1033785-CDS-H-elongata_contig17199:4073..4205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 4074..4205 +
1622930001.3253486-CDS-H-elongata_contig17199:4432..46271622930001.3253486-CDS-H-elongata_contig17199:4432..4627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 4433..4627 +
1691679241.1143124-CDS-H-elongata_contig17199:4432..46271691679241.1143124-CDS-H-elongata_contig17199:4432..4627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 4433..4627 +
1622930001.3441322-CDS-H-elongata_contig17199:5052..51181622930001.3441322-CDS-H-elongata_contig17199:5052..5118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 5053..5118 +
1691679241.1300554-CDS-H-elongata_contig17199:5052..51181691679241.1300554-CDS-H-elongata_contig17199:5052..5118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 5053..5118 +
1622930001.3629081-CDS-H-elongata_contig17199:5520..57441622930001.3629081-CDS-H-elongata_contig17199:5520..5744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 5521..5744 +
1691679241.1419172-CDS-H-elongata_contig17199:5520..57441691679241.1419172-CDS-H-elongata_contig17199:5520..5744Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 5521..5744 +
1622930001.3829176-CDS-H-elongata_contig17199:6039..61051622930001.3829176-CDS-H-elongata_contig17199:6039..6105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 6040..6105 +
1691679241.1499825-CDS-H-elongata_contig17199:6039..61051691679241.1499825-CDS-H-elongata_contig17199:6039..6105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 6040..6105 +
1622930001.397408-CDS-H-elongata_contig17199:6752..68681622930001.397408-CDS-H-elongata_contig17199:6752..6868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 6753..6868 +
1691679241.1627808-CDS-H-elongata_contig17199:6752..68681691679241.1627808-CDS-H-elongata_contig17199:6752..6868Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 6753..6868 +
1622930001.4161975-CDS-H-elongata_contig17199:7145..72731622930001.4161975-CDS-H-elongata_contig17199:7145..7273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 7146..7273 +
1691679241.1745777-CDS-H-elongata_contig17199:7145..72731691679241.1745777-CDS-H-elongata_contig17199:7145..7273Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17199 7146..7273 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17199.4431.1prot_H-elongata_contig17199.4431.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17199 4074..7273 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17199.4431.1

>prot_H-elongata_contig17199.4431.1 ID=prot_H-elongata_contig17199.4431.1|Name=mRNA_H-elongata_contig17199.4431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=309bp
ADSENLNLTKANLVAFSSRIIAAARAIESRRPDRLFNDWFAELLPGASLN
VEAIATSTEPGSNCPKQSADGTDVSAPERDSASRRFALRTRFGDDFFEDC
TLPPKSIKQIVSLGAGMDTRGLRLRASAGTTVFEIDQALVLTVKRSILAG
ASLRTVSVGETLSGVGKAWVIGVEADLGQAEWEGELLQAGFDPALPSAWI
LEGLTMYLEEQEIEKLLQIVAKLCSSGSAFCATCISAECLKRSKKIDDDI
LRTWKWGSDDPQASFQCFFPAGWSFKYVPYATPGEFPDGAGYSLGYKGRK
AYVIGYVR*
back to top

mRNA from alignment at H-elongata_contig17199:4074..7273+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17199.4431.1 ID=mRNA_H-elongata_contig17199.4431.1|Name=mRNA_H-elongata_contig17199.4431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3200bp|location=Sequence derived from alignment at H-elongata_contig17199:4074..7273+ (Himanthalia elongata Himel1 dioecious)
GCGGATTCCGAAAACCTCAATCTGACGAAGGCGAATTTGGTGGCCTTCTC GTCGCGCATAATAGCGGCGGCAAGGGCAATCGAGTCTCGGCGCCCAGACC GCTTGTTCAACGATTGGTTTGCTGAGCTACTGGTAAGTCGGAAAGTAAAC ATTCGCAGCGGTCGCCTGAGCGTGAGTGATAAGCGAGAGCTGTAATCTTC ATCTCTGTCCCGGTTGCGAATTTTCTTATTCCAGGTCAATGACTGACGAC AAAAGTGGTGCAAATGCGTTTAATTTATTGCATTCCACGTACCAATCAGG CCGGCGAAGAAGCAATGCGCTCATTCAAAAGCGTTCAGAAGCTATCGATG GCGTACGAGCCCGGCGCATCCTTGAATGTGGAAGCAATTGCCACATCTAC AGAACCCGGGAGCAATTGCCCAAAGCAGTCGGCCGATGGCACTGATGTCT CTGCGCCTGAAAGGGATTCAGCCTCGCGGCGATTCGCCCTTCGCACCAGA TTTGGCGATGACTTTTTCGAGGACTGTACACTTCCGCCGAAGAGCATCAA GCAGGTATAATAAGTCCGGAGTCAAAACGGTTGGTTACTGGCCTGCGGGT GCCTTCATGAACTAAGGCGAGGCCCGAAACTTGCCCCAAAACGGCGCAAA TTAAATTATAAAATATGTGGAGATGAAAATATTACGCAGAGAACACTTAC GTTGAACTGTCTTGAGCGCGAACCTTCTGCGTTAATATAAATTTAATTTA GTTCCCATGGAAGCCGTTCTCGGGGGGGTGCGGGTAGGGCAATTGCTTGT AAAGTACGCTGGCGTTTTGCAAGCGCGATTCTTTTCTGGATGCACTCGAC CGACCTCATAGGAAAAGAGGCTTTGTCTCCACTTTGATGGCCACATTTTA TATATGGTCACGTCACAACAAACATTTCCTACACAGGGTTGAATGCTTTT CTAAAATGATGAATTTCAAACTGTTGCAGATTGTTTCGCTCGGAGCAGGA ATGGATACACGTGGACTTCGACTTAGGGCCAGTGCCGGCACGACTGTGAG TCCTCTTCGGCGTATCGTATCTCCCGAGTATGAAAATATTAACGTCGATG TCACTCGGTACTGAAAAATAAAGCATGAACTTTTCTCTGCCGGCGGGATG GACCACCTGACCTGTGCATTTATATCCTCGCTTTTCATTTTAAATTATTG TTGAGTACTCCAACAAACATAAATTCAAGCGTTTGGTCTATATAAGTTGC CACTCCACCCAGCGTTGTTGCTATTATTAGCTACGGCTATTGGAGGCAGG CGATTGTGATGAATTATCCCGCGTTGACATGTCCTCGCCCTTACAATCAC GCAGCAACGCCAGCACACGACGCATGTATTTCCACCTAATGCCGATTTGA AATGTTGCTAAACCTTGGTAGTGACTCGAGTTCTTGTAATAATACAGGTT TTTGAGATCGATCAAGCCCTGGTTCTCACGGTCAAGAGGAGCATTCTCGC GGGAGCATCGTTGCGGACCGTATCGGTGGGGGAAACACTGAGTGGCGTGG GTAAAGCATGGGTAATCGGAGTCGAGGCCGATCTCGGACAGGCGGAATGG GAAGGCGAATTGCTTCAGGCTGGTTTCGACCCGGCCCTGCCTAGTGCTTG GATCCTCGAAGGTCTCACAATGTAAGGCAGAGTCGTGTAAATGATCAACT ATGTACAAAGCTGAAACGCCTCGCTGTCGGGGCTGATTTCGGTGCAACTC GACGGACGTTCATTTGTAGTAGAATGTAGAACCAAACGCGCGATAAACGT CGCTTAAACGTCATGGGTGTCTTCACAGAGTATCTCTCATGGGACTGCAT CATTCGCAACTAGGTGGAGGTCTTGCTTTTGCTGAATTAGTAAATTATGC GAGAAACATCGTTTGGACTTCAACGATTTTGAGAATGCGCCCCGGGCGCC GTCATTCTAACGGTAGGTACCTCGAAGAGCAAGAGATTGAGAAACTTCTT CAGATCGTAGCCAAGCTTTGCTCGTCTGGAAGGTGAGGATATAAACGTTA TATCCTGATCAAGCGGACTACGATAGTTCGATGCCTATTTTTCTTAAACA ACATGTGAACTCATTACAACCCTCCGAACATCCATGCCTTCTTAGCACCG TGAGAGGTGCAGTCCAAGGAACCAAGTATCATCAGGTTCGAATGTGTGCA TTACTGCCTTTGAGCACAAAATCGTCAAATCACATGTGATTATTCGTTTT CCCCAATAGTAAATTCCTCGGGTCGACGGTTTGATGTCGGGGATTCCATC ATCATCCCGTAAACTTACATTATTTATCATGTGGAGACTCCAAACTAGAG CCTAGAGCGTGAACTGTAGTCAGGAAGGGTTGTTAGGCATAGGTGAATGA TATATATTGTTAAGGCTACGTAAAGATATTTCTGTATCTCAAATTATTAC GGCTAGGGGAGGAAGAGGGGATGCGGGAGAAAGATGGGGGAATAAGTGAC ATTAGGAGTTATTAGGGGGAAAATAATTATTGCTGATCAGTAAATGTAAA TTTGATTACTTATAAACTAGGATGTTTCGGGCGGCGGCATCATGCATTGT CTCGTAAAGGGCGTTGCCCTAGAGCTGCAAACTTACAGATTGCCGTCTGC AGCTCATTCTTCACGGTGGTTTCTTCTAGTGCCTTCTGCGCTACCTGTAT CTCTGCGGAATGTCTAAAGCGCTCGAAGAAGATTGACGACGATATCCTCC GCACGTGGAAGTGGGGTAGTGACGATCCACAAGCATCCTTCCAATGTAAA AGACCGCCTAGAATTCATCAGTCCCCGTAATCTGACGTGATCATAGCGCG CTTCACCCTCGCAGTGTATGGTATGTAATAAATCGATAGTTTAAGTGTTA CCATATATTTGACGAGTATTCCGAGTGCTTAACCGTACGTCGACGTTACC CAATCAAATGCTGGTCCGACTGACGTGTTGTCGGGGCTTTTATTGTTTCA CAGCAAGCGGATTGATTGACATGCAATCCCTTTCAACACCGAATTTCCGA TTCGGACCTGCGTCATTTCCAGGCTTCTTTCCTGCCGGATGGTCCTTCAA GTATGTACCGTACGCCACGCCTGGAGAGTTTCCAGACGGTGCTGGATATT CCTTGGGATACAAGGGCAGGAAGGCCTATGTTATTGGTTATGTTCGATAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17199:4074..7273+

>mRNA_H-elongata_contig17199.4431.1 ID=mRNA_H-elongata_contig17199.4431.1|Name=mRNA_H-elongata_contig17199.4431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1854bp|location=Sequence derived from alignment at H-elongata_contig17199:4074..7273+ (Himanthalia elongata Himel1 dioecious)
GCGGATTCCGAAAACCTCAATCTGACGAAGGCGAATTTGGTGGCCTTCTC
GTCGCGCATAATAGCGGCGGCAAGGGCAATCGAGTCTCGGCGCCCAGACC
GCTTGTTCAACGATTGGTTTGCTGAGCTACTGGCGGATTCCGAAAACCTC
AATCTGACGAAGGCGAATTTGGTGGCCTTCTCGTCGCGCATAATAGCGGC
GGCAAGGGCAATCGAGTCTCGGCGCCCAGACCGCTTGTTCAACGATTGGT
TTGCTGAGCTACTGCCCGGCGCATCCTTGAATGTGGAAGCAATTGCCACA
TCTACAGAACCCGGGAGCAATTGCCCAAAGCAGTCGGCCGATGGCACTGA
TGTCTCTGCGCCTGAAAGGGATTCAGCCTCGCGGCGATTCGCCCTTCGCA
CCAGATTTGGCGATGACTTTTTCGAGGACTGTACACTTCCGCCGAAGAGC
ATCAAGCAGCCCGGCGCATCCTTGAATGTGGAAGCAATTGCCACATCTAC
AGAACCCGGGAGCAATTGCCCAAAGCAGTCGGCCGATGGCACTGATGTCT
CTGCGCCTGAAAGGGATTCAGCCTCGCGGCGATTCGCCCTTCGCACCAGA
TTTGGCGATGACTTTTTCGAGGACTGTACACTTCCGCCGAAGAGCATCAA
GCAGATTGTTTCGCTCGGAGCAGGAATGGATACACGTGGACTTCGACTTA
GGGCCAGTGCCGGCACGACTATTGTTTCGCTCGGAGCAGGAATGGATACA
CGTGGACTTCGACTTAGGGCCAGTGCCGGCACGACTGTTTTTGAGATCGA
TCAAGCCCTGGTTCTCACGGTCAAGAGGAGCATTCTCGCGGGAGCATCGT
TGCGGACCGTATCGGTGGGGGAAACACTGAGTGGCGTGGGTAAAGCATGG
GTAATCGGAGTCGAGGCCGATCTCGGACAGGCGGAATGGGAAGGCGAATT
GCTTCAGGCTGGTTTCGACCCGGCCCTGCCTAGTGCTTGGATCCTCGAAG
GTCTCACAATGTTTTTGAGATCGATCAAGCCCTGGTTCTCACGGTCAAGA
GGAGCATTCTCGCGGGAGCATCGTTGCGGACCGTATCGGTGGGGGAAACA
CTGAGTGGCGTGGGTAAAGCATGGGTAATCGGAGTCGAGGCCGATCTCGG
ACAGGCGGAATGGGAAGGCGAATTGCTTCAGGCTGGTTTCGACCCGGCCC
TGCCTAGTGCTTGGATCCTCGAAGGTCTCACAATGTACCTCGAAGAGCAA
GAGATTGAGAAACTTCTTCAGATCGTAGCCAAGCTTTGCTCGTCTGGAAG
GTACCTCGAAGAGCAAGAGATTGAGAAACTTCTTCAGATCGTAGCCAAGC
TTTGCTCGTCTGGAAGTGCCTTCTGCGCTACCTGTATCTCTGCGGAATGT
CTAAAGCGCTCGAAGAAGATTGACGACGATATCCTCCGCACGTGGAAGTG
GGGTAGTGACGATCCACAAGCATCCTTCCAATTGCCTTCTGCGCTACCTG
TATCTCTGCGGAATGTCTAAAGCGCTCGAAGAAGATTGACGACGATATCC
TCCGCACGTGGAAGTGGGGTAGTGACGATCCACAAGCATCCTTCCAATGC
TTCTTTCCTGCCGGATGGTCCTTCAAGTATGTACCGTACGCCACGCCTGG
AGAGTTTCCAGACGGTGCTGGATATTCCTTGGGATACAAGGGCAGGAAGG
CCTATGTTATTGGTTATGTTCGATAAGCTTCTTTCCTGCCGGATGGTCCT
TCAAGTATGTACCGTACGCCACGCCTGGAGAGTTTCCAGACGGTGCTGGA
TATTCCTTGGGATACAAGGGCAGGAAGGCCTATGTTATTGGTTATGTTCG
ATAA
back to top