mRNA_H-elongata_contig171774.4421.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171774.4421.1
Unique NamemRNA_H-elongata_contig171774.4421.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig171774.4421.1 vs. uniprot
Match: A0A6H5L2Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Y8_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.030e-47
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1 
Query:    1 RECCLRQMAVPPSFLGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPRADTVLHRGDKVFVLGKPPAL 231
            RECCLRQMAVPPS LGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPRADTVLH GD+VF+LG+PP L
Sbjct:   60 RECCLRQMAVPPSLLGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILGRPPVL 136
[Close]
BLAST of mRNA_H-elongata_contig171774.4421.1 vs. uniprot
Match: D7FKC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKC7_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 2.170e-42
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1 
Query:    1 RECCLRQMAVPPSFLGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPRADTVLHRGDKVFVLGKPPAL 231
            RECCLRQMAVPPS LGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPRADTVLH GD+VF+LG+PP L
Sbjct: 1568 RECCLRQMAVPPSLLGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPRADTVLHPGDRVFILGRPPVL 1644
[Close]
BLAST of mRNA_H-elongata_contig171774.4421.1 vs. uniprot
Match: A0A7S1XKF3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKF3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.290e-24
Identity = 44/68 (64.71%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:   19 QMAVPPSFLGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPRADTVLHRGDKVFVLGKP 222
            QM VPP    HS+GE++Q L APPL  VA  L R  GT+N+ EPYVYT PRADTVLH GD+VFVLG+P
Sbjct:   22 QMKVPPELYQHSYGELYQELVAPPLNLVALGLYRTAGTKNSVEPYVYTAPRADTVLHEGDRVFVLGEP 89
[Close]
BLAST of mRNA_H-elongata_contig171774.4421.1 vs. uniprot
Match: F0Z7T9_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z7T9_DICPU)

HSP 1 Score: 58.9 bits (141), Expect = 2.500e-8
Identity = 27/73 (36.99%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:    4 ECCLRQMAVPPSFLGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPRADTVLHRGDKVFVLGKP 222
            +C L Q+ VP  + GH + E+F+ L    +  +   L R +    AP PYV+T P +DT+LH  D V++L +P
Sbjct: 1132 QCLLNQIKVPSQYHGHLYSELFETLIHKNI--LPLGLYRCKEITGAPNPYVFTCPPSDTILHENDLVYILYRP 1202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171774.4421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L2Y8_9PHAE2.030e-4792.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKC7_ECTSI2.170e-4292.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1XKF3_9STRA1.290e-2464.71Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
F0Z7T9_DICPU2.500e-836.99Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171774contigH-elongata_contig171774:151..384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue1.7e-31
Seed eggNOG ortholog2880.D7FKC7
KEGG koko:K04936
KEGG TC1.A.1.3.1,1.A.1.3.2,1.A.1.3.3
KEGG Pathwayko04022,ko04270,ko04911,ko04924,ko04970,ko04972,map04022,map04270,map04911,map04924,map04970,map04972
EggNOG free text desc.large conductance calcium-activated potassium channel activity
EggNOG OGsKOG1420@1,KOG1420@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size213
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.337655-UTR-H-elongata_contig171774:150..1711622930000.337655-UTR-H-elongata_contig171774:150..171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig171774 151..171 +
1691679240.8003058-UTR-H-elongata_contig171774:150..1711691679240.8003058-UTR-H-elongata_contig171774:150..171Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig171774 151..171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.3531115-CDS-H-elongata_contig171774:171..3841622930000.3531115-CDS-H-elongata_contig171774:171..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171774 172..384 +
1691679240.8151066-CDS-H-elongata_contig171774:171..3841691679240.8151066-CDS-H-elongata_contig171774:171..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171774 172..384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171774.4421.1prot_H-elongata_contig171774.4421.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171774 172..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171774.4421.1

>prot_H-elongata_contig171774.4421.1 ID=prot_H-elongata_contig171774.4421.1|Name=mRNA_H-elongata_contig171774.4421.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MAVPPSFLGHSFGEMFQHLAAPPLRCVAFALLRARGTRNAPEPYVYTGPR
ADTVLHRGDKVFVLGKPPAL*
back to top

mRNA from alignment at H-elongata_contig171774:151..384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171774.4421.1 ID=mRNA_H-elongata_contig171774.4421.1|Name=mRNA_H-elongata_contig171774.4421.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig171774:151..384+ (Himanthalia elongata Himel1 dioecious)
AGGGAATGCTGCCTACGACAGATGGCGGTGCCCCCGAGCTTTCTCGGTCA
CTCGTTCGGCGAAATGTTCCAGCACCTGGCCGCGCCGCCTCTCCGCTGCG
TCGCGTTTGCTCTCCTACGAGCCCGTGGCACTCGCAACGCCCCCGAACCC
TACGTGTACACGGGCCCCCGGGCCGACACGGTGCTCCACCGCGGAGACAA
GGTGTTCGTACTCGGGAAGCCGCCCGCGCTGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig171774:151..384+

>mRNA_H-elongata_contig171774.4421.1 ID=mRNA_H-elongata_contig171774.4421.1|Name=mRNA_H-elongata_contig171774.4421.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig171774:151..384+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGTGCCCCCGAGCTTTCTCGGTCACTCGTTCGGCGAAATGTTCCA
GCACCTGGCCGCGCCGCCTCTCCGCTGCGTCGCGTTTGCTCTCCTACGAG
CCCGTGGCACTCGCAACGCCCCCGAACCCTACGTGTACACGGGCCCCCGG
GCCGACACGGTGCTCCACCGCGGAGACAAGGTGTTCGTACTCGGGAAGCC
GCCCGCGCTGTGAATGGCGGTGCCCCCGAGCTTTCTCGGTCACTCGTTCG
GCGAAATGTTCCAGCACCTGGCCGCGCCGCCTCTCCGCTGCGTCGCGTTT
GCTCTCCTACGAGCCCGTGGCACTCGCAACGCCCCCGAACCCTACGTGTA
CACGGGCCCCCGGGCCGACACGGTGCTCCACCGCGGAGACAAGGTGTTCG
TACTCGGGAAGCCGCCCGCGCTGTGA
back to top