mRNA_H-elongata_contig171607.4413.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171607.4413.1
Unique NamemRNA_H-elongata_contig171607.4413.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Match: D8LT51_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT51_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 8.440e-27
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    4 EQVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAFCCTK 162
            ++VEWRK+YRKYRPLRQPATCN+CH+KT+TAAYHKIC PCA+ERRVC +CCTK
Sbjct:   49 DKVEWRKRYRKYRPLRQPATCNDCHKKTITAAYHKICAPCARERRVCPWCCTK 101
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BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Match: A0A6H5JI96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI96_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 6.280e-26
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    4 EQVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAFCCTK 162
            ++VEWRK+YRKYRPLRQPATCN+CH+KT+TAAYHKIC PCA+ERRVC +CCTK
Sbjct:   49 DKVEWRKRYRKYRPLRQPATCNDCHKKTITAAYHKICTPCARERRVCPWCCTK 101
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BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Match: A0A836CAN1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN1_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 4.910e-22
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    4 EQVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAFCCTK 162
            ++VEWRKKYRKYRPL QPATC +C Q+TVTAAYHKIC PCAK + VCAFCC +
Sbjct:   12 DKVEWRKKYRKYRPLTQPATCRDCSQRTVTAAYHKICQPCAKAKGVCAFCCDR 64
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BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Match: A0A6V3DVU9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3DVU9_HETAK)

HSP 1 Score: 89.0 bits (219), Expect = 6.980e-21
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 TEQVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAFCC 156
            +E++EWRKKYRKY+PL QPA C  C QKTVT+AYH  C PCAK+RR+CAFCC
Sbjct:   48 SEKIEWRKKYRKYKPLTQPAVCRFCKQKTVTSAYHSACKPCAKQRRICAFCC 99
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BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Match: A0A6A3LRT3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LRT3_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.830e-20
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    7 QVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAFCC 156
            Q+EWRKKYRKY+PL QP +C +CHQKTVT+AYH  C PCAKER +CA CC
Sbjct:   48 QIEWRKKYRKYKPLTQPGSCIHCHQKTVTSAYHSSCDPCAKERNICAKCC 97
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BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Match: A0A5D6YPR8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YPR8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.700e-20
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    4 EQVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAFCC 156
            +Q+EWRKKYRKY+PL QPA+C +CHQKTVT+AYH  C PCA+ER +CA CC
Sbjct:   47 KQIEWRKKYRKYKPLTQPASCIHCHQKTVTSAYHAACDPCARERDICAKCC 97
[Close]
BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Match: A0A3R7MRP7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7MRP7_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.870e-19
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 EQVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAFCC 156
            +Q+EWRKKYRKY+PL QP +C  CHQKTVT+AYH  C PCAKER VCA CC
Sbjct:   70 KQIEWRKKYRKYKPLSQPGSCIYCHQKTVTSAYHSACNPCAKERDVCAKCC 120
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BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Match: G4ZER0_PHYSP (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4ZER0_PHYSP)

HSP 1 Score: 84.3 bits (207), Expect = 3.370e-19
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 EQVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAFCC 156
            +Q+EWRKKYRKY+PL QP +C  CHQKTVT+AYH  C PCAKER +CA CC
Sbjct:   47 KQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCC 97
[Close]
BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Match: A0A6G0XRH5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRH5_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 3.870e-19
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    7 QVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAFCC 156
            Q+ WRKKYRKY+PL QPA+C +CHQKTV AAYH +C PCAKE+ VCA CC
Sbjct:   48 QIVWRKKYRKYKPLTQPASCTSCHQKTVLAAYHVLCQPCAKEKGVCAKCC 97
[Close]
BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Match: A0A833SF75_PHYIN (Uncharacterized protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SF75_PHYIN)

HSP 1 Score: 84.3 bits (207), Expect = 5.720e-19
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 EQVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAFCC 156
            +Q+EWRKKYRKY+PL QP +C  CHQKTVT+AYH  C PCAKER +CA CC
Sbjct:   72 KQIEWRKKYRKYKPLTQPGSCIYCHQKTVTSAYHASCDPCAKERDICAKCC 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171607.4413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT51_ECTSI8.440e-2781.13Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JI96_9PHAE6.280e-2681.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CAN1_9STRA4.910e-2275.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V3DVU9_HETAK6.980e-2171.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6A3LRT3_9STRA5.830e-2072.00Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A5D6YPR8_9STRA6.700e-2070.59Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3R7MRP7_9STRA2.870e-1972.55Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
G4ZER0_PHYSP3.370e-1970.59Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A6G0XRH5_9STRA3.870e-1972.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A833SF75_PHYIN5.720e-1970.59Uncharacterized protein n=3 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171607contigH-elongata_contig171607:744..905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue3.8e-20
Seed eggNOG ortholog2880.D8LT51
Preferred nameC9orf85
EggNOG free text desc.Uncharacterized conserved protein (DUF2039)
EggNOG OGsKOG3241@1,KOG3241@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionProtein of unknown function DUF2039
Ec32 orthologEc-08_004260.1
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.3171084-CDS-H-elongata_contig171607:743..9051622929999.3171084-CDS-H-elongata_contig171607:743..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171607 744..905 +
1691679240.4786732-CDS-H-elongata_contig171607:743..9051691679240.4786732-CDS-H-elongata_contig171607:743..905Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171607 744..905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171607.4413.1prot_H-elongata_contig171607.4413.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171607 744..905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171607.4413.1

>prot_H-elongata_contig171607.4413.1 ID=prot_H-elongata_contig171607.4413.1|Name=mRNA_H-elongata_contig171607.4413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
TEQVEWRKKYRKYRPLRQPATCNNCHQKTVTAAYHKICPPCAKERRVCAF
CCTK
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mRNA from alignment at H-elongata_contig171607:744..905+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171607.4413.1 ID=mRNA_H-elongata_contig171607.4413.1|Name=mRNA_H-elongata_contig171607.4413.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig171607:744..905+ (Himanthalia elongata Himel1 dioecious)
ACCGAGCAGGTGGAATGGAGGAAGAAGTACCGAAAGTACAGGCCACTCCG
GCAGCCAGCAACCTGCAACAACTGCCACCAAAAGACCGTCACCGCGGCCT
ACCACAAGATCTGCCCGCCCTGCGCCAAGGAGCGGCGAGTGTGCGCCTTC
TGCTGCACGAAA
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Coding sequence (CDS) from alignment at H-elongata_contig171607:744..905+

>mRNA_H-elongata_contig171607.4413.1 ID=mRNA_H-elongata_contig171607.4413.1|Name=mRNA_H-elongata_contig171607.4413.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig171607:744..905+ (Himanthalia elongata Himel1 dioecious)
ACCGAGCAGGTGGAATGGAGGAAGAAGTACCGAAAGTACAGGCCACTCCG
GCAGCCAGCAACCTGCAACAACTGCCACCAAAAGACCGTCACCGCGGCCT
ACCACAAGATCTGCCCGCCCTGCGCCAAGGAGCGGCGAGTGTGCGCCTTC
TGCTGCACGAAAACCGAGCAGGTGGAATGGAGGAAGAAGTACCGAAAGTA
CAGGCCACTCCGGCAGCCAGCAACCTGCAACAACTGCCACCAAAAGACCG
TCACCGCGGCCTACCACAAGATCTGCCCGCCCTGCGCCAAGGAGCGGCGA
GTGTGCGCCTTCTGCTGCACGAAA
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