mRNA_H-elongata_contig171601.4411.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171601.4411.1
Unique NamemRNA_H-elongata_contig171601.4411.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig171601.4411.1 vs. uniprot
Match: D7FK46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK46_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 1.380e-5
Identity = 19/34 (55.88%), Postives = 22/34 (64.71%), Query Frame = 1 
Query:    7 QEAEHQGDFRYDWVVHTRFDLAWVRPLPPLRHFS 108
            +E      F YDWV+  R D+AW RPLPPLR FS
Sbjct:  139 EEKRIGSGFTYDWVIRGRLDVAWARPLPPLRSFS 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171601.4411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK46_ECTSI1.380e-555.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171601contigH-elongata_contig171601:215..322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.2165656-CDS-H-elongata_contig171601:214..3221622929999.2165656-CDS-H-elongata_contig171601:214..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171601 215..322 -
1691679240.4627883-CDS-H-elongata_contig171601:214..3221691679240.4627883-CDS-H-elongata_contig171601:214..322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171601 215..322 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171601.4411.1prot_H-elongata_contig171601.4411.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171601 215..322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171601.4411.1

>prot_H-elongata_contig171601.4411.1 ID=prot_H-elongata_contig171601.4411.1|Name=mRNA_H-elongata_contig171601.4411.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MVQEAEHQGDFRYDWVVHTRFDLAWVRPLPPLRHFS
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mRNA from alignment at H-elongata_contig171601:215..322-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171601.4411.1 ID=mRNA_H-elongata_contig171601.4411.1|Name=mRNA_H-elongata_contig171601.4411.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=108bp|location=Sequence derived from alignment at H-elongata_contig171601:215..322- (Himanthalia elongata Himel1 dioecious)
ATGGTACAAGAGGCGGAACATCAAGGAGATTTCCGCTACGATTGGGTGGT
ACACACGCGTTTTGACCTCGCCTGGGTCCGCCCATTGCCTCCTTTGCGAC
ATTTCTCT
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Coding sequence (CDS) from alignment at H-elongata_contig171601:215..322-

>mRNA_H-elongata_contig171601.4411.1 ID=mRNA_H-elongata_contig171601.4411.1|Name=mRNA_H-elongata_contig171601.4411.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig171601:215..322- (Himanthalia elongata Himel1 dioecious)
ATGGTACAAGAGGCGGAACATCAAGGAGATTTCCGCTACGATTGGGTGGT
ACACACGCGTTTTGACCTCGCCTGGGTCCGCCCATTGCCTCCTTTGCGAC
ATTTCTCTATGGTACAAGAGGCGGAACATCAAGGAGATTTCCGCTACGAT
TGGGTGGTACACACGCGTTTTGACCTCGCCTGGGTCCGCCCATTGCCTCC
TTTGCGACATTTCTCT
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