mRNA_H-elongata_contig17149.4405.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17149.4405.1 vs. uniprot
Match: D7G7E5_ECTSI (VHL domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7E5_ECTSI) HSP 1 Score: 573 bits (1478), Expect = 5.350e-189 Identity = 395/943 (41.89%), Postives = 490/943 (51.96%), Query Frame = 1
Query: 1 MDNLLPTVAAADVTSNEFRETNLPYQQWEASRTHFTPNTPSDIFHLLPPIAGRKERQEACGTL--PTSPRIGSQNPHPAPVDRNLSDLYDPSLDPSPIGMEKRGAVQPVRITRVLRHQEPRNREARSAQHL-GYSNKSSGSII---VLILNGYNTATRTSHMRG---------GERADEIQDDTG--VDVYLQSSHSIFFEHATLLPQQWICRTLQNGSLHANIPPYEGSTIPDCTS---EDNELSFGLTVFLAAADDWS-------ESDVVNDPCAWGNHPGFNASGNDLKSGSHSDENLLKASVE-KVTRYVFQAEDGTPGPSRNAFRLQFEPGPLGMELEEDPGRRGIVQIRSILQAGQADQDGRLFVGSLIVAVGGWGK-------RSSTTTGLNA--VELD--------------KQINDSGEWP-----VIVRSLAEFKTAALSRKSDQLFLFWAIDREAPEVVSALGAPNPTDGPHMPTPGCYSRSPFSELDALAGIGNVLLMGNGDVPSRLARAISAREASRFVGME--IQGGPPGWEPGRSTGTREGGCSQEVRYD---------DDISSTACGPQVDRTP----ADILLNEGAGYRSNLKGSSLI-------------DENHSVQRPESG--SALGTWEFETGGGIFNENDEGLAARLEFSCGDRERAPG---------ERPVLPLGLEASAKDDFPVFILFCNNHGSAAMQVSWINYDGKCIPRRLLAPGACYFERSFATHPWVIQDIISTP----------DEYDLKEGASDVA-----------AHEKAKGNCCLVRLGDAMAVSRLAGSFIWNPAGRTISFTKQTKAGVISTSPGGVGAAGLAPIEGSGLDPNKKRFCVAGSDTEAVMERAATARAVERAEKTRILDEIRTWRLHPPGGVGQNAG---EHPPGPGLGVGVPNLRFVMIG 2472
M+NLLP VA DVTSN FRET+LPYQQWE RTH TP TPS++ HLLPPI GRK R++ G+ P SP + P PAPVDRN S LYDP+LDPSPIG E+RG VQPVRI+R++ PR A L G + + G I V +LNG+ RT HMR AD + +D +DV+++ S +H TLLP + CR LQ+GS PP S IP+ + + E GLTVFLA +WS + + ++P PG G SD + K + E ++T +FQ EDGTP PSRNAFR+QFEPGPLG+ELEE PG RGIV++R +LQAGQA+ DGRL G LIVAVGGW + R +T +G A V LD D G I+RSLA+F+ A R+ D+LF+ WA+DR APE V+ALG P +P SP S G G S R A + ++ G E + G PGWE S + D + S A G Q+ AD L G + GS + E + + E G SA G WEFETGGGIF+++D+GLAAR AP + P PLGLE+SA DD VFI FCNNH SA M+VSWINYDG+ +PRR LAPGACYFERSFATHPWVI+ S + + +E A A + C+VRLGDAMA+++ GS IWNP GRT+S TKQ + GV S A G +G GLDP KR C+AG EA RA ARAV R EK R+L+E++ WR HP GG G AG G LG GVPNLR VM+G
Sbjct: 1 MENLLPVVAGIDVTSNHFRETSLPYQQWETKRTHHTPTTPSEVGHLLPPIGGRKPRRDESGSSLPPISPYVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRIV----PRQDSGLGALELQGAARSAEGPHIPTAVTVLNGH----RTQHMRDRTSAPAGDCASAADVLSEDEERCIDVFVEG-FSRGIDHETLLPSEMFCRALQHGSQG---PPKPSSLIPEDSRHYLDVREGYLGLTVFLARTSEWSGTIDGGVQGEKQDEPI----EPGI---------GDESDRDDRKLATETEITHMIFQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGERGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWDEASANGALRPNTASGAGAGHVALDGVDIYGNLDVPALRSSAMDGGSGAKSHESAIIRSLADFEEAVSCREPDRLFVLWALDRHAPEAVAALGPPQANGVCTVPR----GWSPASLYSRRRNEGGGRARGAFPPGSERQRPFEASTSPKWQGYEETVPAGAPGWETATSLARGRDSLGYSLSSDRPKLASSPRNQASHAAGGGQLQAXXXXREAD-LATSAFGSPKEVTGSERLAAGIDRLGWPSRESEGGAPRFGEGGARSAQG-WEFETGGGIFDDSDQGLAARKHPGRSQATLAPAAAPADETEKKLPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVSWINYDGRRVPRRSLAPGACYFERSFATHPWVIEHSDSNHYGNRSLHAGGQQEEKRESTGSGAPAPLQPSPPREAGDDDDAELCVVRLGDAMALAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEDGGGLDPGMKRQCMAGQRREAEEARARAARAVVREEKARVLEEMKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMG 912
BLAST of mRNA_H-elongata_contig17149.4405.1 vs. uniprot
Match: A0A6H5JVY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY5_9PHAE) HSP 1 Score: 500 bits (1287), Expect = 3.510e-160 Identity = 370/964 (38.38%), Postives = 460/964 (47.72%), Query Frame = 1
Query: 85 EASRTHFTPNTPSDIFHLLPPIAGRKERQEACGTL--PTSPRIGSQNPHPAPVDRNLSDLYDPSLDPSPIGMEKRGAVQPVRITRVLRHQEPRNREARSAQHLGYSNKSSGSI----IVLILNGYNTATRTSHMRG--GERADEIQ-----DDTGVDVYLQSSHSIFFEHATLLPQQWICRTLQNGSLHANIPPYEGSTIPDCTSEDN-------ELSFGLTVFLAAADDWSES------DVVNDPCAWGNHPGFNASGNDLKSGSHSDENLLKASVEKVTRYVFQAEDGTPGPSRNAFRLQFEPGPLGMELEEDPGRRGIVQIRSILQAGQADQDGRLFVGSLIVAVGGWGK-------RSSTTTG----------------LNAVELDKQINDSGEWP-----VIVRSLAEFKTAALSRKSDQLFLFWAIDREAPEVVSALGAPNPTDGPHMPTPGCYSRSPFSELDALAGIGNVLLMGNGDVPSRLARAISAREASRFVGMEIQGGPPGWEPGRSTGTREGGCSQEVRYD-------------DDISSTACGPQVDR---------------TPADILLNEGAGYRSNLKGSSLIDENHSVQRPESGSALGT--WEFETGGGIFNENDEGLAAR---------LEFSCGDRERAPGERPVLPLGLEASAKDDFPVFILFCNNHGSAAMQV------------------------------------------SWINYDGKCIPRRLLAPGACYFERSFATHPWVIQDIISTPDEYDLKEGASDVAAH------EKAK-----------------------GNCCLVRLGDAMAVSRLAGSFIWNPAGRTISFTKQTKAGVISTSPGGVGAAGLAPIEGSGLDPNKKRFCVAGSDTEAVMERAATARAVERAEKTRILDEIRTWRLHPPGGVGQNAG---EHPPGPGLGVGVPNLRFVMIGS 2475
+ RTH TP TPSD+ HLLPPI GRK R++ G+ P P + P PAPVDRN S LYDP+LDPSPIG E+RG VQPVRI+RV+ PR AQ L +S+ + +V +LNGYNT R G+ A +++ +DV+++ S +H TLLP + CR LQ+GS PP S I SED+ E GLTVFLA +WS + D C PG + L A + +TR +FQ EDGTP PSRNAFR+QFEPGPLG+ELEE PG RGIV++R +LQAGQA+ DGRL G LIVAVGGW + R ST +G L+ L D G I+RSLA+F+ A R+ D+LF+ WA+DR APE V+ALG P +P SP S G + G S R A ++ + G E P GR T T +RY + S A G Q+ +P ++ +E N G + R G A WEFETGGGIF+++D+GLAAR L + + A + P PLGLE+SA DD VFI FCNNH SA M+V SWI+YDG+ +PRR LAPGACYFERSFATHPWVIQ S + G++D + H EK + C+VRLGD MAV++ GS IWNP GRT+S TKQ + GV S A G EG GLDP KR C+AG EA RA ARAV R EK R+L+EI+ WR HP GG G AG G LG GVPNLR VM+GS
Sbjct: 23 QTKRTHHTPTTPSDVGHLLPPIGGRKPRRDGSGSSLPPIPPCVEPSLPCPAPVDRNRSGLYDPALDPSPIGKEERGKVQPVRISRVV----PRQDSGLGAQELQGEARSAEGLPIPTVVTVLNGYNTQHRRDRTSAPAGDYASATHVLSEDEESCIDVFVEG-FSRGVDHETLLPSEMFCRALQHGSQG---PPKPSSLI----SEDSRHYLDVREGYLGLTVFLARTSEWSGTIDGGVQGEKQDECI---EPGIG-------------DGKLAAEMA-ITRMIFQREDGTPAPSRNAFRVQFEPGPLGVELEEYPGDRGIVRVRRVLQAGQAELDGRLSAGCLIVAVGGWDESSANGTLRPSTASGAGTGHVVLDGVDIYGNLDVPALRSSAMDGGSGAEAHKSAIIRSLADFEEAVSCREPDRLFVLWALDRHAPEAVAALGPPQANGVCTVPR----GWSPASVYSRRRNEGRGRVRGTFPSGSERQRPFEASKSPKSQGYEES--EPEGALGRETTTILARSRDSLRYSLSSDRPKLASFARNQASHAAGGGQLQTGGGQPEADLAMSAFGSPKEVTGSERLAAGINRLGWPSREGKGGAPRFGEGGARNAIGWEFETGGGIFDDDDQGLAARKHPARRQATLAPAATPADEAEEKPPTFPLGLESSAVDDLAVFIWFCNNHESAVMKVEQPHEGVGNPVRGFGFCWEKEHFVLTPRDTHGVPLIQRWHVVSWIDYDGRRVPRRSLAPGACYFERSFATHPWVIQHSDSN------QAGSNDRSLHAGGQQEEKCEPTGSGAPVPLKPSPPREAGDDDDAELCVVRLGDTMAVAQFTGSLIWNPTGRTLSITKQARVGVPGMSAAARAAVGAGVEEGGGLDPGMKRLCMAGQRREAEEARARAARAVVREEKARVLEEIKAWRTHPLGGGGLGAGGGVAEGLGGKLGQGVPNLRVVMMGS 945
BLAST of mRNA_H-elongata_contig17149.4405.1 vs. uniprot
Match: A0A835ZGW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGW3_9STRA) HSP 1 Score: 144 bits (363), Expect = 6.630e-32 Identity = 164/595 (27.56%), Postives = 239/595 (40.17%), Query Frame = 1
Query: 856 VFQAEDGTPGPSRNAFRLQFEPGPLGMELEEDPGRRGIV--------------------QIRSILQAGQADQDGRLFVGSLIVAVGGWGKRSSTTTGLNAVELDKQINDSGEWPVIVRSLAEFKTAALSRKSDQLFLFWAIDREAPEVVSALGAPNPTDGPHMPTPGCYSRSPFSELDALAGIGNVLLMGNGDVPSRLARAISA--REASRFVGMEIQGGPPGWEPGRSTGTREGGCSQEVRYDDDISSTACGPQVDRTPADILLNEGAGYRSNLKGSSLIDENHSVQRPESGSALGTWEFETGGGIFNENDEGL--------------------AARLEFSCGDRERAPGERPV--------LPLGLEASAKDDFPVFILFCNNHGSAAMQVSWINYDGKCIPRRLLAPGACYFERSFATHPWVIQDIISTPDEYDLKEGASDVAAHEKAKGNCCLVRLG-DAMAVSR-LAGSFIWNPAGRTISFTKQTKAGVISTSPGGVGAAGLAPIEGSGLDPNKKRFCVAGSDTEAVMERAATARAVERAEKTRILDEIRTWRLHPPGGVG-QNAGEHPPGPGLGVGVPNLRFVMIGSQR 2481
+F +EDGT R+ +R+ F GP+GMEL+ D RG+V Q R +L+ GQA +GR+ G LI+A GGW R+S + N V+VRSLA+F+ A+ R D + +D ++PE V A F E DAL G G R A A++A R A + R ++++ DD S+ + G D + + +G G +E+ + E G+ W F TGGGI +D L AAR+ S G A + P LPL + AS D PVF+ F N H + ++V W++Y G+ +PRR+L PG YFERSFA+HPW++Q + G S + + C VR G DA+A LA +W+P R++S Q K GS + A + A K +IL+E+R R G + + A H GL G+P+LR VM+G+Q+
Sbjct: 238 LFPSEDGTIPIPRSVYRVDFAAGPMGMELQCD-AHRGLVSQCLMPTYLPVLLLIVIGRTQQRGVLRGGQAAANGRVRAGHLILAAGGW--RASA----------RPANR-----VVVRSLADFEGIAVGRDPDVPLSIFFLDPDSPEAVQA----------------------FWEEDALHCEG-----GYRAQRQRSAEAVAASMRRADSMI------------------VRRHARARDIMRSDDGSAASAGG-CDSSVSXXXXXDGNCGSXEAXGDGFNEEHE--EDAEQGNG---WGFATGGGILESHDAVLSPPPRDAPAGDIDSDDDGQVAARVRRSEG-AVPASSQSPXXXXXXXLSLPLSMGASKADVAPVFLCFSNAHATMKLRVGWLDYGGQNVPRRVLLPGQTYFERSFASHPWLLQAM-----------GPSGTGSGSE----CVAVRCGADAVAAGAGLAFCAMWDPLRRSVSVMPQAK----------------------------------GSSSHARL----------MAAKHQILEEMRQHRSFDAGSLAFETASAH----GLSSGIPHLRVVMVGAQQ 699 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17149.4405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17149.4405.1 >prot_H-elongata_contig17149.4405.1 ID=prot_H-elongata_contig17149.4405.1|Name=mRNA_H-elongata_contig17149.4405.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=830bp MDNLLPTVAAADVTSNEFRETNLPYQQWEASRTHFTPNTPSDIFHLLPPIback to top mRNA from alignment at H-elongata_contig17149:2452..5796+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17149.4405.1 ID=mRNA_H-elongata_contig17149.4405.1|Name=mRNA_H-elongata_contig17149.4405.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3345bp|location=Sequence derived from alignment at H-elongata_contig17149:2452..5796+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17149:2452..5796+ >mRNA_H-elongata_contig17149.4405.1 ID=mRNA_H-elongata_contig17149.4405.1|Name=mRNA_H-elongata_contig17149.4405.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4980bp|location=Sequence derived from alignment at H-elongata_contig17149:2452..5796+ (Himanthalia elongata Himel1 dioecious)back to top |