mRNA_H-elongata_contig171284.4398.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig171284.4398.1
Unique NamemRNA_H-elongata_contig171284.4398.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig171284.4398.1 vs. uniprot
Match: D7G9C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9C9_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 5.280e-25
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    1 GPRNGATSLLASARKEWPSQNELERGFLASARKSESKGHGKNYWTSDKNFRNEMMAFNTEFQAQAGLPAVWMARPTDMNKSGRRDLVNATQRTGGYNAMVERLG 312
            GP+ G + L+  A K WPS+  LE G  AS  K   +     YWT+  NF  E++AFNT +Q + GLPAVWM +  DM  +GRRD+VNA QR GGY+  +ERLG
Sbjct:  187 GPQGGGSELIKIATKGWPSREALETGNRASESKHMLEKCASGYWTTGSNFVREVLAFNTNYQLEEGLPAVWMVKLIDMINNGRRDIVNAIQRAGGYDPAIERLG 290
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig171284.4398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9C9_ECTSI5.280e-2549.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig171284contigH-elongata_contig171284:267..1020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog2880.D7G9C9
EggNOG OGs2EVMA@1,2SXK1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929997.4051788-CDS-H-elongata_contig171284:266..3951622929997.4051788-CDS-H-elongata_contig171284:266..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171284 267..395 -
1691679239.9791777-CDS-H-elongata_contig171284:266..3951691679239.9791777-CDS-H-elongata_contig171284:266..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171284 267..395 -
1622929997.4232225-CDS-H-elongata_contig171284:834..10201622929997.4232225-CDS-H-elongata_contig171284:834..1020Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171284 835..1020 -
1691679239.9894507-CDS-H-elongata_contig171284:834..10201691679239.9894507-CDS-H-elongata_contig171284:834..1020Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig171284 835..1020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig171284.4398.1prot_H-elongata_contig171284.4398.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig171284 267..1020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig171284.4398.1

>prot_H-elongata_contig171284.4398.1 ID=prot_H-elongata_contig171284.4398.1|Name=mRNA_H-elongata_contig171284.4398.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
GPRNGATSLLASARKEWPSQNELERGFLASARKSESKGHGKNYWTSDKNF
RNEMMAFNTEFQAQAGLPAVWMARPTDMNKSGRRDLVNATQRTGGYNAMV
ERLG*
back to top

mRNA from alignment at H-elongata_contig171284:267..1020-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig171284.4398.1 ID=mRNA_H-elongata_contig171284.4398.1|Name=mRNA_H-elongata_contig171284.4398.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=754bp|location=Sequence derived from alignment at H-elongata_contig171284:267..1020- (Himanthalia elongata Himel1 dioecious)
GGACCACGTAACGGTGCGACGTCGCTGTTGGCCTCGGCGCGCAAGGAGTG
GCCCAGCCAGAACGAGCTGGAGCGAGGCTTCCTGGCGAGCGCCCGCAAGT
CGGAGTCAAAGGGCCACGGCAAAAACTACTGGACCTCGGACAAAAACTTC
CGGAACGAGATGATGGCCTTCAACACGGAGTTCCAGGTACACGAAAACCT
CTCACGGTGCTAAGAAGACGTGGATGTTCGGAAGATTTTAATTAGCTCAT
ATAGATTAATATATATATATATATATATACTTCATACTAGAAATTAAACA
TACAGGTACGAAATACCAGAGCTAAATAGGTATAATTATAGACAGTACTT
GCAGATGTATTCGTACATCCAACGGGGACAGGGGAAATTTATTTTCCCTG
TTCAGCTGACCACTAGCAGAAGGCAACCAAATCCGGTTGATCCTTCTGCT
AAAAGTGAGACCAACAACTGATAGATGCTGCTGGTGGATAGGGTATAGGG
AAGAAAAGAGGGCTAAGAGAGGTAAGGCACATAAAATACACACTAGAGTG
ATAAGGTTTATCGATACAATAGCTGTTGTTGAAAAACAGCGTTAGATGAC
ACTACGATCGGTCCCGCTTCGGCAGGCGCAGGCAGGGCTGCCTGCCGTGT
GGATGGCGCGACCGACGGACATGAACAAGAGCGGGAGGAGGGACCTCGTA
AACGCCACCCAGAGGACCGGCGGCTACAACGCCATGGTGGAGCGCTTAGG
GTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig171284:267..1020-

>mRNA_H-elongata_contig171284.4398.1 ID=mRNA_H-elongata_contig171284.4398.1|Name=mRNA_H-elongata_contig171284.4398.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig171284:267..1020- (Himanthalia elongata Himel1 dioecious)
GGACCACGTAACGGTGCGACGTCGCTGTTGGCCTCGGCGCGCAAGGAGTG
GCCCAGCCAGAACGAGCTGGAGCGAGGCTTCCTGGCGAGCGCCCGCAAGT
CGGAGTCAAAGGGCCACGGCAAAAACTACTGGACCTCGGACAAAAACTTC
CGGAACGAGATGATGGCCTTCAACACGGAGTTCCAGGGACCACGTAACGG
TGCGACGTCGCTGTTGGCCTCGGCGCGCAAGGAGTGGCCCAGCCAGAACG
AGCTGGAGCGAGGCTTCCTGGCGAGCGCCCGCAAGTCGGAGTCAAAGGGC
CACGGCAAAAACTACTGGACCTCGGACAAAAACTTCCGGAACGAGATGAT
GGCCTTCAACACGGAGTTCCAGGCGCAGGCAGGGCTGCCTGCCGTGTGGA
TGGCGCGACCGACGGACATGAACAAGAGCGGGAGGAGGGACCTCGTAAAC
GCCACCCAGAGGACCGGCGGCTACAACGCCATGGTGGAGCGCTTAGGGTG
AGCGCAGGCAGGGCTGCCTGCCGTGTGGATGGCGCGACCGACGGACATGA
ACAAGAGCGGGAGGAGGGACCTCGTAAACGCCACCCAGAGGACCGGCGGC
TACAACGCCATGGTGGAGCGCTTAGGGTGA
back to top