mRNA_H-elongata_contig17071.4370.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17071.4370.1
Unique NamemRNA_H-elongata_contig17071.4370.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Match: D7FML7_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML7_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.260e-21
Identity = 82/95 (86.32%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:   10 ADWTMPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTCYEGLNKAGLGNI 294
            ADWTMPIDYQNDLG+TLLHVAAQNGNKRIA+LCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LTCYEGLN   LG +
Sbjct: 1963 ADWTMPIDYQNDLGVTLLHVAAQNGNKRIAKLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILNADGLTCYEGLNHDKLGQL 2057
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BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Match: A0A3R6Y2M9_9STRA (Uncharacterized protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6Y2M9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.350e-12
Identity = 39/98 (39.80%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:    1 IDQADWTMPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTCYEGLNKAGLGNI 294
            ++Q DWT+PID Q+  G TLL +A QN NKRIA+LCLRKGADVN +                                     LTCYEGLN   +  I
Sbjct:  481 LNQPDWTVPIDAQDSAGNTLLSIACQNNNKRIAKLCLRKGADVNTQNLNGQTVLHYAHAYGFHDLMEYMMEKGAKDDVLNKDGLTCYEGLNAEAVDAI 578
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BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Match: A0A397BIR8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BIR8_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.410e-12
Identity = 39/98 (39.80%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:    1 IDQADWTMPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTCYEGLNKAGLGNI 294
            ++Q DWT+PID Q+  G TLL +A QN NKRIA+LCLRKGADVN +                                     LTCYEGLN   +  I
Sbjct: 1108 LNQPDWTVPIDAQDSAGNTLLSIACQNNNKRIAKLCLRKGADVNTQNLNGQTVLHYAHAYGFHDLMEYMMEKGAKDDVLNKDGLTCYEGLNAEAVDAI 1205
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BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Match: W4FNR9_9STRA (WW domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNR9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.420e-12
Identity = 39/98 (39.80%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:    1 IDQADWTMPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTCYEGLNKAGLGNI 294
            ++Q DWT+PID Q+  G TLL +A QN NKRIA+LCLRKGADVN +                                     LTCYEGLN   +  I
Sbjct: 1505 LNQPDWTVPIDAQDSAGNTLLSIACQNNNKRIAKLCLRKGADVNTQNLNGQTVLHYAHAYGFHDLMEYMMEKGAKDDVLNKDGLTCYEGLNAEAVDAI 1602
[Close]
BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Match: A0A3R7XS48_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7XS48_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.900e-12
Identity = 40/100 (40.00%), Postives = 48/100 (48.00%), Query Frame = 1 
Query:    1 IDQADWTMPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTCYEGLNK--AGLGNI 294
            ++Q DWT+PID Q+  G TLL +A QN NKRIA+LCLRKGADVN +                                     LTCYEGLN     LG +
Sbjct:  442 LNQPDWTVPIDAQDSAGNTLLSIACQNNNKRIAKLCLRKGADVNTQNLNGQTVLHYAHAYGFHDLMEYMMEKGAKDDVLNKDGLTCYEGLNAEATSLGEV 541
[Close]
BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Match: A0A8J2WIX1_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WIX1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.940e-12
Identity = 38/98 (38.78%), Postives = 49/98 (50.00%), Query Frame = 1 
Query:    1 IDQADWTMPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTCYEGLNKAGLGNI 294
            ++Q DW +PIDYQ++LG TLL +A QNGNKRIA+LCLR+GA+VN                                       LTCYEGL+   +  I
Sbjct: 1598 MNQPDWMLPIDYQDELGNTLLSIAVQNGNKRIAKLCLRRGANVNLPNNTGQTVLHYAYAYGFEDLAEYLKSKGADDRPKNADGLTCYEGLSMEEIEQI 1695
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BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Match: F0XVE9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVE9_AURAN)

HSP 1 Score: 67.0 bits (162), Expect = 2.020e-12
Identity = 37/98 (37.76%), Postives = 48/98 (48.98%), Query Frame = 1 
Query:    1 IDQADWTMPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTCYEGLNKAGLGNI 294
            ++Q DW +PIDYQ++LG TLL VA QNGNKRIA+L LR+GA++N                                       LTCYEGL+   +  I
Sbjct:    1 MNQPDWLLPIDYQDELGNTLLSVAVQNGNKRIAKLTLRRGANINLPNNNGQTVLHYAYAYGFEDIAEYLKSKGADDRPKNSDGLTCYEGLSMQEIEAI 98
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BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Match: A0A7S3HJJ1_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJJ1_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.630e-12
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:    1 IDQADWTMPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTCYEGLNKAGL 285
            ++QADW++PID+QND G TLLH+ AQNGNKR+ +LCLR+GA++   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LTCYEGL    L
Sbjct: 1272 VNQADWSVPIDFQNDQGNTLLHIVAQNGNKRMVKLCLRRGANLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLTCYEGLGAKEL 1366
[Close]
BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Match: K3WBG7_GLOUD (WW domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBG7_GLOUD)

HSP 1 Score: 67.8 bits (164), Expect = 4.380e-11
Identity = 34/92 (36.96%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:    1 IDQADWTMPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTCYEGLNK 276
            ++  DWT+PID ++ +G TLL +A QN NKRIA+LC+R+GAD+N +                                     LTCYEGLNK
Sbjct: 1733 LNSPDWTLPIDSKDIMGNTLLSIACQNNNKRIAKLCMRRGADINTQNLNGQTVLHYCHEYGFHDLMDYLMEKSAKDDILNADGLTCYEGLNK 1824
[Close]
BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Match: A0A6G0WHL4_9STRA (WW domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WHL4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.960e-11
Identity = 37/98 (37.76%), Postives = 47/98 (47.96%), Query Frame = 1 
Query:    1 IDQADWTMPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTCYEGLNKAGLGNI 294
            ++Q DW +PID +++ G TLL VA QN NKRIA+LCLRKGADVN +                                     LTCYEGL+   +  I
Sbjct: 1440 LNQPDWLLPIDAKDNAGNTLLSVACQNNNKRIAKLCLRKGADVNTQNLNGQTVLHYTHAYGFHDLMEYLMEKGAKDDILNKDGLTCYEGLSSEAVEAI 1537
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17071.4370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FML7_ECTSI1.260e-2186.32WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A3R6Y2M9_9STRA1.350e-1239.80Uncharacterized protein n=7 Tax=Aphanomyces astaci... [more]
A0A397BIR8_9STRA1.410e-1239.80Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FNR9_9STRA1.420e-1239.80WW domain-containing protein n=1 Tax=Aphanomyces a... [more]
A0A3R7XS48_9STRA1.900e-1240.00Peptidylprolyl isomerase n=2 Tax=Aphanomyces astac... [more]
A0A8J2WIX1_9STRA1.940e-1238.78Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0XVE9_AURAN2.020e-1237.76Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3HJJ1_9STRA2.630e-1274.74Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
K3WBG7_GLOUD4.380e-1136.96WW domain-containing protein n=1 Tax=Globisporangi... [more]
A0A6G0WHL4_9STRA5.960e-1137.76WW domain-containing protein n=1 Tax=Aphanomyces e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17071contigH-elongata_contig17071:1653..2428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue2.2e-15
Seed eggNOG ortholog2880.D7FML7
EggNOG free text desc.positive regulation of myosin-light-chain-phosphatase activity
EggNOG OGsCOG0666@1,KOG0505@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-23_000810.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17071.4370.1prot_H-elongata_contig17071.4370.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17071 1674..2428 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.135138-UTR-H-elongata_contig17071:1652..16731622929994.135138-UTR-H-elongata_contig17071:1652..1673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17071 1653..1673 +
1691679238.5816047-UTR-H-elongata_contig17071:1652..16731691679238.5816047-UTR-H-elongata_contig17071:1652..1673Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17071 1653..1673 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.1493886-CDS-H-elongata_contig17071:1673..18051622929994.1493886-CDS-H-elongata_contig17071:1673..1805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17071 1674..1805 +
1691679238.5906637-CDS-H-elongata_contig17071:1673..18051691679238.5906637-CDS-H-elongata_contig17071:1673..1805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17071 1674..1805 +
1622929994.1621962-CDS-H-elongata_contig17071:2284..24281622929994.1621962-CDS-H-elongata_contig17071:2284..2428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17071 2285..2428 +
1691679238.6006052-CDS-H-elongata_contig17071:2284..24281691679238.6006052-CDS-H-elongata_contig17071:2284..2428Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17071 2285..2428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17071.4370.1

>prot_H-elongata_contig17071.4370.1 ID=prot_H-elongata_contig17071.4370.1|Name=mRNA_H-elongata_contig17071.4370.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
MPIDYQNDLGLTLLHVAAQNGNKRIARLCLRKGADVNKRNNNGQTALHYA
YSFGFESFGEYIISKGADDSVTNADGLTCYEGLNKAGLGNI*
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mRNA from alignment at H-elongata_contig17071:1653..2428+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17071.4370.1 ID=mRNA_H-elongata_contig17071.4370.1|Name=mRNA_H-elongata_contig17071.4370.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=776bp|location=Sequence derived from alignment at H-elongata_contig17071:1653..2428+ (Himanthalia elongata Himel1 dioecious)
ATCGATCAGGCGGACTGGACCATGCCGATAGACTACCAGAACGACCTCGG
GTTGACCCTTCTCCACGTCGCCGCTCAGAATGGCAACAAGCGCATTGCTA
GGCTCTGCCTCCGGAAGGGGGCCGACGTAAACAAGCGTAATAATAATGGA
CAGGTGGGCAACAGACCCTCAAAGACTCAGAGCTGTCGGTATCTTCTATC
ATTGCTACAGAATCAAGAGACCGTAGAGACCATCTGTCCTGTCACCTCAC
CCTTAGTTAGACGACTCATATCTTCTTCGTCGGCTTCGGTGAGGCTGTCT
CACCGTCATCAGCTCAGCTTCGTTTCTTCGTTGGTCTATGTTTCGAAGGG
TGCGGGCTTACCTCACGGTCGCATCATCAGTATCTAATCGGACCGAGGCG
ATCTCATATCGTTCATGGGCTAAGCGGAGCCGTCGTCCCGGCTGCTGAAC
TACGCAACGATGTCCCTATTATGCTGTAGATCCAAATTAACTCCTTATAA
TTTTACTTCATGCAGGGGTTTCATTCTAACTGCCTCCCTTCTCTTTCCTT
CGTCCACCGTTGCCCGGCCCTCCCGGCCGAAACGGGAAATTAACCATTTA
ATCATTATATAATCGAATCGACTCGGTGAAAGACGGCTCTGCATTACGCG
TACAGCTTCGGGTTCGAGAGCTTCGGGGAGTATATTATCTCCAAGGGCGC
CGATGACAGCGTCACGAATGCCGACGGTCTCACGTGCTATGAAGGCCTTA
ACAAAGCGGGCCTGGGGAATATATAG
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Coding sequence (CDS) from alignment at H-elongata_contig17071:1653..2428+

>mRNA_H-elongata_contig17071.4370.1 ID=mRNA_H-elongata_contig17071.4370.1|Name=mRNA_H-elongata_contig17071.4370.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig17071:1653..2428+ (Himanthalia elongata Himel1 dioecious)
ATGCCGATAGACTACCAGAACGACCTCGGGTTGACCCTTCTCCACGTCGC
CGCTCAGAATGGCAACAAGCGCATTGCTAGGCTCTGCCTCCGGAAGGGGG
CCGACGTAAACAAGCGTAATAATAATGGACAGATGCCGATAGACTACCAG
AACGACCTCGGGTTGACCCTTCTCCACGTCGCCGCTCAGAATGGCAACAA
GCGCATTGCTAGGCTCTGCCTCCGGAAGGGGGCCGACGTAAACAAGCGTA
ATAATAATGGACAGACGGCTCTGCATTACGCGTACAGCTTCGGGTTCGAG
AGCTTCGGGGAGTATATTATCTCCAAGGGCGCCGATGACAGCGTCACGAA
TGCCGACGGTCTCACGTGCTATGAAGGCCTTAACAAAGCGGGCCTGGGGA
ATATATAGACGGCTCTGCATTACGCGTACAGCTTCGGGTTCGAGAGCTTC
GGGGAGTATATTATCTCCAAGGGCGCCGATGACAGCGTCACGAATGCCGA
CGGTCTCACGTGCTATGAAGGCCTTAACAAAGCGGGCCTGGGGAATATAT
AG
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