mRNA_H-elongata_contig17048.4361.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17048.4361.1
Unique NamemRNA_H-elongata_contig17048.4361.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 5.360e-30
Identity = 57/66 (86.36%), Postives = 60/66 (90.91%), Query Frame = 1
Query:    1 RFYLDPLDWWRVKSADFPHLAILARRVLAIPATQAESERLFSSAGNIVTKNRNKLASSTVELLVLL 198
            + YLDPLDWWRV+ ADFPHLA LARRVLAIPATQAESERLFS AGNIVTKNRN LA +TVELLVLL
Sbjct:  218 KVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLL 283          
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Match: A0A6H5JPB0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPB0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.750e-20
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1
Query:   40 SADFPHLAILARRVLAIPATQAESERLFSSAGNIVTKNRNKLASSTVELLVLL 198
            S DFPHLA LARRVLAIPATQA+SERLFS AGNIVTKNRN LA +TVELLVLL
Sbjct:  151 STDFPHLANLARRVLAIPATQAKSERLFSCAGNIVTKNRNNLAPTTVELLVLL 203          
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Match: R7TXD1_CAPTE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=2 Tax=Capitella teleta TaxID=283909 RepID=R7TXD1_CAPTE)

HSP 1 Score: 76.3 bits (186), Expect = 1.130e-16
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   13 DPLDWWRVKSADFPHLAILARRVLAIPATQAESERLFSSAGNIVTKNRNKLASSTVELLVLL 198
            DPL WW  K A +P +A++AR +LA+PA+   +ER+FS AGNIVT  R KL SS V+ L+ L
Sbjct:   26 DPLKWWAAKEAAYPSVAVIARHILAVPASSVPAERIFSLAGNIVTNKRTKLTSSNVDSLIFL 87          
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Match: R7UJ35_CAPTE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UJ35_CAPTE)

HSP 1 Score: 74.7 bits (182), Expect = 2.520e-16
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   13 DPLDWWRVKSADFPHLAILARRVLAIPATQAESERLFSSAGNIVTKNRNKLASSTVELLVLL 198
            DPL WW  K A +P +A++AR +LA+PA+   +ER+FS  GNIVT  R KL SS V+ L+ L
Sbjct:    3 DPLKWWAAKEAAYPSVAVIARHILAVPASSVPAERIFSLGGNIVTNKRTKLTSSNVDSLIFL 64          
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Match: UPI000EFF4741 (zinc finger BED domain-containing protein 1 n=1 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=UPI000EFF4741)

HSP 1 Score: 76.3 bits (186), Expect = 1.030e-15
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1
Query:   10 LDPLDWWRVKSADFPHLAILARRVLAIPATQAESERLFSSAGNIVTKNRNKLASSTVELLVLL 198
            +DPL WW++   DFPHL+ILAR+ L IPA+ + SERLFS++GN+VT  R  L  + V +LV L
Sbjct:  118 MDPLTWWQLHQVDFPHLSILARKYLCIPASSSPSERLFSTSGNVVTCQRTCLKPTQVNMLVFL 180          
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.440e-15
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:   16 PLDWWRVKSADFPHLAILARRVLAIPATQAESERLFSSAGNIVTKNRNKLASSTVELLVLL 198
            PL+WWRVK+ ++P LA LARRVL IPA QA+SER+FSSAG +VTK R ++    V L+V L
Sbjct:  480 PLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFL 540          
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Match: C7ZQR5_FUSV7 (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Fusarium vanettenii (strain ATCC MYA-4622 / CBS 123669 / FGSC 9596 / NRRL 45880 / 77-13-4) TaxID=660122 RepID=C7ZQR5_FUSV7)

HSP 1 Score: 71.2 bits (173), Expect = 5.090e-15
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   19 LDWWRVKSADFPHLAILARRVLAIPATQAESERLFSSAGNIVTKNRNKLASSTVELLVLL 198
            L WW+  S  FP L+ILARR LAIPAT A  ER+FS + NI+T+NRN+++SS    L+LL
Sbjct:    1 LIWWKSNSNRFPILSILARRYLAIPATSASIERIFSISSNIITRNRNRISSSLTRQLILL 60          
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Match: A0A420IYG9_9PEZI (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Golovinomyces cichoracearum TaxID=62708 RepID=A0A420IYG9_9PEZI)

HSP 1 Score: 72.0 bits (175), Expect = 2.550e-14
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   13 DPLDWWRVKSADFPHLAILARRVLAIPATQAESERLFSSAGNIVTKNRNKLASSTVELLVLL 198
            DPL +W+  S+  P LAILARRVLAIPAT A  ER FS + NI+T+NR +L  +TV+ L+LL
Sbjct:   58 DPLLYWKNNSSRLPILAILARRVLAIPATSASIERAFSVSNNIITRNRTRLLPNTVKKLILL 119          
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Match: A0A1A8B204_NOTFU (6-phosphofructo-2-kinase/fructose-2, 6-biphosphatase 1 n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8B204_NOTFU)

HSP 1 Score: 70.5 bits (171), Expect = 5.270e-14
Identity = 29/62 (46.77%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   13 DPLDWWRVKSADFPHLAILARRVLAIPATQAESERLFSSAGNIVTKNRNKLASSTVELLVLL 198
            DP  WW+     FPH+A +A+R+L +P T   SER+FS+AG+IV+ NR++LA  +V+ L+ L
Sbjct:   58 DPFRWWKTNEHKFPHVAKVAKRLLCVPGTSVPSERIFSTAGDIVSANRSRLAPDSVDRLIFL 119          
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 5.630e-14
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 RFYLDPLDWWRVKSADFPHLAILARRVLAIPATQAESERLFSSAGNIVTKNRNKLASSTVELLVLL 198
            + + +PLD WR K  ++P LA LARRVLAIP++QA+SER+FS+AG  VT  R++L    VELLV L
Sbjct:  478 KVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYL 543          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17048.4361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE5.360e-3086.36Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JPB0_9PHAE7.750e-2086.79Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
R7TXD1_CAPTE1.130e-1653.23Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
R7UJ35_CAPTE2.520e-1651.61Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI000EFF47411.030e-1553.97zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A6H5JHP9_9PHAE3.440e-1560.66Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
C7ZQR5_FUSV75.090e-1556.67Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A420IYG9_9PEZI2.550e-1458.06Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A1A8B204_NOTFU5.270e-1446.776-phosphofructo-2-kinase/fructose-2, 6-biphosphata... [more]
D8LCS5_ECTSI5.630e-1456.06Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17048contigH-elongata_contig17048:488..685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue4.3e-13
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.493935-CDS-H-elongata_contig17048:487..6851622929993.493935-CDS-H-elongata_contig17048:487..685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17048 488..685 -
1691679238.39709-CDS-H-elongata_contig17048:487..6851691679238.39709-CDS-H-elongata_contig17048:487..685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17048 488..685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17048.4361.1prot_H-elongata_contig17048.4361.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17048 488..685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17048.4361.1

>prot_H-elongata_contig17048.4361.1 ID=prot_H-elongata_contig17048.4361.1|Name=mRNA_H-elongata_contig17048.4361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
RFYLDPLDWWRVKSADFPHLAILARRVLAIPATQAESERLFSSAGNIVTK
NRNKLASSTVELLVLL
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mRNA from alignment at H-elongata_contig17048:488..685-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17048.4361.1 ID=mRNA_H-elongata_contig17048.4361.1|Name=mRNA_H-elongata_contig17048.4361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig17048:488..685- (Himanthalia elongata Himel1 dioecious)
AGGTTTTATCTCGACCCCTTGGACTGGTGGCGGGTTAAGAGCGCCGACTT CCCGCACTTGGCTATTCTCGCCCGCCGTGTCCTCGCCATCCCCGCCACAC AGGCGGAGTCGGAGCGCCTGTTCTCCTCCGCAGGAAACATTGTGACCAAG AATCGCAACAAGCTGGCTTCAAGCACCGTTGAGTTGCTTGTTCTGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig17048:488..685-

>mRNA_H-elongata_contig17048.4361.1 ID=mRNA_H-elongata_contig17048.4361.1|Name=mRNA_H-elongata_contig17048.4361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig17048:488..685- (Himanthalia elongata Himel1 dioecious)
AGGTTTTATCTCGACCCCTTGGACTGGTGGCGGGTTAAGAGCGCCGACTT
CCCGCACTTGGCTATTCTCGCCCGCCGTGTCCTCGCCATCCCCGCCACAC
AGGCGGAGTCGGAGCGCCTGTTCTCCTCCGCAGGAAACATTGTGACCAAG
AATCGCAACAAGCTGGCTTCAAGCACCGTTGAGTTGCTTGTTCTGCTGAG
GTTTTATCTCGACCCCTTGGACTGGTGGCGGGTTAAGAGCGCCGACTTCC
CGCACTTGGCTATTCTCGCCCGCCGTGTCCTCGCCATCCCCGCCACACAG
GCGGAGTCGGAGCGCCTGTTCTCCTCCGCAGGAAACATTGTGACCAAGAA
TCGCAACAAGCTGGCTTCAAGCACCGTTGAGTTGCTTGTTCTGCTG
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