mRNA_H-elongata_contig100425.44.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100425.44.1
Unique NamemRNA_H-elongata_contig100425.44.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 1.950e-81
Identity = 138/308 (44.81%), Postives = 194/308 (62.99%), Query Frame = 1
Query:    1 MMVGVHVDYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDWENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEFGDYRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYVNATKEIGLRFVRG--SGLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISWKSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFGDSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSRDIQILHVGTKDQHVDILTKAL 918
            M++ VHVD I   G+ + CD F  +L E  PVK+ GEL+ Y+ C +ERD E G++ I+Q+ FAE +  +YGI    ++P    + L    E    +D  F   R LVGSLMW++   RPDIANA+RA AR+  +P   HWKA L I  YV  T  +G+ F RG  +G+ + VF DADYA+ + +RRSVSG  V+ G   ++W S TQKCVT +T E EYV + D  K+ +F R V  F+ P  +  C+ +F D++GA+ I +NP + S SK+ID++ HFI+ELV  ++I I HV T+ QH D LTKA+
Sbjct:   56 MIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEASADVPF---RELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAI 360          
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 1.170e-80
Identity = 138/308 (44.81%), Postives = 193/308 (62.66%), Query Frame = 1
Query:    1 MMVGVHVDYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDWENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEFGDYRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYVNATKEIGLRFVRG--SGLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISWKSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFGDSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSRDIQILHVGTKDQHVDILTKAL 918
            M++ VHVD I   G+ + CD F  +L E  PVK+ GEL+ Y+ C +ERD E G++ I+Q+ FAE +  +YGI    ++P    + L    E    +D  F   R LVGSLMW++   RPDIANA+RA AR+  +P   HWKA L I  YV  T  +G+ F RG  +G+ + VF DADYA+ + +RRSVSG  V+ G   ++W S TQKCVT +T E EYV + D  K+ +F R V  F+ P     C+ +F D++GA+ IA+NP + S SK+ID++ HFI+ELV  ++I I +V T  QH D LTKA+
Sbjct:    1 MIMVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEACADVPF---RELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAI 305          
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 1.650e-80
Identity = 139/308 (45.13%), Postives = 193/308 (62.66%), Query Frame = 1
Query:    1 MMVGVHVDYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDWENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEFGDYRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYVNATKEIGLRFVRG--SGLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISWKSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFGDSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSRDIQILHVGTKDQHVDILTKAL 918
            M++ VHVD I   G+ + CD F  +L E  PVK+ GEL+ Y+ C +ERD E G++ I+Q+ FAE +  +YGI    ++P    + L    E    +D  F   R LVGSLMW++   RPDIANA+RA AR+  +P   HWKA L I  YV  T  +G+ F RG  +G+ + VF DADYA+ + +RRSVSG  V+ G   ++W S TQKCVT +T E EYV + D  K+ +F R V  F+ P     C+ +F D++GA+ IA+NP + S SK+ID++ HFI+ELV  ++I I HV T  QH D LTKA+
Sbjct:  118 MIIVVHVDDIFAVGQKERCDKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVPLPVSVKLTDFDENEACADVPF---RELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAI 422          
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 2.330e-80
Identity = 140/306 (45.75%), Postives = 194/306 (63.40%), Query Frame = 1
Query:   13 VHVDYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDWENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEFGD--YRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYVNATKEIGLRFVRGS--GLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISWKSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFGDSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSRDIQILHVGTKDQHVDILTKAL 918
            VHVD I   GE + CD F  +L    PVK+ G+L+ Y+GC +ERDW+ G ++I+Q+T+AE +  ++G+     IP   G+ L    +     D+E     +R L+GSLMW++   RPDIANA+RA AR+  +P   HW+A L I  YV  T ++G+ F RGS  GL + VF DADYA+ + +RRSVSG  V+ G   ISW S TQKCVT +T E EYV L D  K+ +F R V  F+ P+    C+ +F D++GA+ +A NP S S SK+ID++ HFI+ELV  ++I I HV +  QH D LTKAL
Sbjct:  122 VHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422          
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 8.370e-80
Identity = 132/302 (43.71%), Postives = 196/302 (64.90%), Query Frame = 1
Query:   22 DYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDWENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEFGD---YRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYVNATKEIGLRFVRGSGLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISWKSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFGDSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSRDIQILHVGTKDQHVDILTKAL 918
            D I+V+G  D C    + L + FP K  GE   + GCA ERD E G + I+Q  + ++++ ++ +   S+IPAS G+D+G +       DDE G     R  +GS+MW+S   RPDI+ A+RA ARH+H P  RHWKA+++I AY+  T+++G+ + RGSGL L+V+ DA YA  + +RRSVSG+A  +G T IS  S TQ  V+ ++ E EY+   +  K+A+F R VL F+ P+ +G  + +  D++GAMA+  NP S++RSK+ID+++HFI+ L RS DI I  V T +QH D+LTKAL
Sbjct:  198 DXILVAGSDDDCKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPK------RDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKAL 492          
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 259 bits (662), Expect = 1.900e-78
Identity = 140/306 (45.75%), Postives = 194/306 (63.40%), Query Frame = 1
Query:   13 VHVDYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDWENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEFGD--YRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYVNATKEIGLRFVRGS--GLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISWKSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFGDSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSRDIQILHVGTKDQHVDILTKAL 918
            VHVD I   GE + CD F  +L    PVK+ G+L+ Y+GC +ERDW+ G ++I+Q+T+AE +  ++G+     IP   G+ L    +     D+E     +R L+GSLMW++   RPDIANA+RA AR+  +P   HW+A L I  YV  T ++G+ F RGS  GL + VF DADYA+ + +RRSVSG  V+ G   ISW S TQKCVT +T E EYV L D  K+ +F R V  F+ P+    C+ +F D++GA+ +A NP S S SK+ID++ HFI+ELV  ++I I HV +  QH D LTKAL
Sbjct:  296 VHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 596          
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 8.870e-77
Identity = 132/304 (43.42%), Postives = 190/304 (62.50%), Query Frame = 1
Query:   13 VHVDYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDWENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEFGDYRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYVNATKEIGLRFVRGS--GLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISWKSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFGDSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSRDIQILHVGTKDQHVDILTKAL 918
            VHVD I   GE + CD F ++L +  PVK+ GEL+ Y+GC +ER+ E G + I+Q+TF + +  +YG+    ++P SSG+ L         ++  F   R LVGSLMW++   RPDIANA+RA AR+  +P   HW A + I  Y   T   G+ F RG+  G  L  +ADAD+A+ + +RRSVSG  V  G  A+SW S TQKCVT +T E EYV L D  K+ +F R +  F+ PQ+   C+ +F D++GA+ +A NP S S SK+ID++ HF++ELV  ++I ++HV +  Q  D LTK+L
Sbjct:  146 VHVDDIFAVGERERCDKFGADLNKSVPVKNLGELRWYSGCFYERNKETGRLTISQQTFTDELAAEYGVVGGRSVPMSSGVKLSDFDADEVATEFPF---RELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 446          
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Match: A0A6H5KR24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR24_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 9.650e-76
Identity = 139/307 (45.28%), Postives = 190/307 (61.89%), Query Frame = 1
Query:   13 VHVDYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDWENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEFGD--YRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYVNATKEIGLRFVRGS--GLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISWKSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFGDSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSR-DIQILHVGTKDQHVDILTKAL 918
            VHVD I   GE +  D F  +L     VK+ G+L  Y+GC +ERDW+ G ++I+Q+T+AE +  ++G+     IP   GM L    +     D+E     +R L+GSLMW++   RPDIANA+RA AR+  +P   HW+A L I  YV  T + G+ F RGS  GL + VFADADYA+ + +RRSVSG  V+ G   ISW S TQKCVT +T E EYV L D  K+ +F R V  F+ P+    C+ +F D++GA+ +A NP S S  K+ID++ HFI+ELV  R +I I HV +  QH D LT+AL
Sbjct:   21 VHVDDIFSIGEEERYDQFGRDLNTMVRVKNLGDLIWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGMKLSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDSGITFRRGSIAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNLKHIDVRHHFIRELVVGRKEISIFHVESAYQHADFLTRAL 322          
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 1.210e-74
Identity = 139/306 (45.42%), Postives = 194/306 (63.40%), Query Frame = 1
Query:   13 VHVDYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDWENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEFGD--YRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYVNATKEIGLRFVRGS--GLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISWKSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFGDSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSRDIQILHVGTKDQHVDILTKAL 918
            VHVD I   GE + CD F  +L    PVK+ G+L+ Y+GC +ERDW+ G ++I+Q+T+AE +  ++G+     IP   G+ L    +     D+E     +R L+GSLMW++   RPDIANA+RA AR+  +P   HW+A L I  YV  T ++G+ F RGS  GL + VF DADYA+ + +RRSVSG  V+ G   ISW S TQKCVT +T E EYV L D  K+ +F R V  F+ P+    C+ +F D++GA+ +A NP S S SK+ID++ HFI+ELV  ++I I HV +  QH + LTKAL
Sbjct:  817 VHVDDIFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLKLSEFDQ-----DEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKAL 1117          
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 259 bits (661), Expect = 1.360e-74
Identity = 137/308 (44.48%), Postives = 195/308 (63.31%), Query Frame = 1
Query:    1 MMVGVHVDYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDWENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEFGDYRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYVNATKEIGLRFVRG--SGLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISWKSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFGDSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSRDIQILHVGTKDQHVDILTKAL 918
            M++ VHVD I   G+ + CD F S+L E  PVK+ GEL+ Y+ C ++RD E G++ I+Q+ FAE +  +YG+    ++P    + L    E    +D  F   R LVGSLMW++   RPDIANA+RA AR+  +P   HWKA L I  YV  T  +G+ F RG  +G+ + VF DADYA+ + +RRSVSG  V+ G   ++W S TQKCVT +T E EYV + D  K+ +F R V  F+ P     C+ +F D++GA+ IA+NP + S SK+ID++ HFI+ELV  ++I I HV ++ QH D LTKA+
Sbjct: 1152 MIIVVHVDDIFAVGQKERCDKFGSDLNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDFDENEACADVPF---RELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAI 1456          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100425.44.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4G9_9PHAE1.950e-8144.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KP70_9PHAE1.170e-8044.81Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE1.650e-8045.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLN0_9PHAE2.330e-8045.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE8.370e-8043.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE1.900e-7845.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE8.870e-7743.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR24_9PHAE9.650e-7645.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2R1_9PHAE1.210e-7445.42Integrase catalytic domain-containing protein n=3 ... [more]
A0A6H5JHY5_9PHAE1.360e-7444.48Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100425contigH-elongata_contig100425:1456..2385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue9.8e-44
Seed eggNOG ortholog164328.Phyra85518
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size930
Cds size930
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.6778142-CDS-H-elongata_contig100425:1455..23851622929546.6778142-CDS-H-elongata_contig100425:1455..2385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100425 1456..2385 -
1691679063.5676112-CDS-H-elongata_contig100425:1455..23851691679063.5676112-CDS-H-elongata_contig100425:1455..2385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100425 1456..2385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100425.44.1prot_H-elongata_contig100425.44.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100425 1456..2385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100425.44.1

>prot_H-elongata_contig100425.44.1 ID=prot_H-elongata_contig100425.44.1|Name=mRNA_H-elongata_contig100425.44.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=310bp
MMVGVHVDYIIVSGESDVCDAFFSELKERFPVKHQGELKMYTGCAFERDW
ENGIVEINQKTFAENMITQYGITDVSNIPASSGMDLGLRVEGGTGSDDEF
GDYRALVGSLMWISVMIRPDIANALRACARHSHNPTARHWKALLRIAAYV
NATKEIGLRFVRGSGLRLSVFADADYAAVSNNRRSVSGVAVLLGDTAISW
KSSTQKCVTTATCETEYVVLCDAAKKAIFDRVVLVFLQPQLAGICVDIFG
DSEGAMAIANNPSSASRSKYIDLKFHFIQELVRSRDIQILHVGTKDQHVD
ILTKALWRKK
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mRNA from alignment at H-elongata_contig100425:1456..2385-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100425.44.1 ID=mRNA_H-elongata_contig100425.44.1|Name=mRNA_H-elongata_contig100425.44.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=930bp|location=Sequence derived from alignment at H-elongata_contig100425:1456..2385- (Himanthalia elongata Himel1 dioecious)
ATGATGGTTGGAGTACATGTCGATTATATAATTGTATCGGGAGAGAGCGA TGTCTGTGATGCGTTCTTCAGTGAGTTGAAAGAGAGATTTCCTGTGAAAC ACCAAGGGGAGTTAAAGATGTACACCGGCTGTGCATTCGAACGTGATTGG GAGAACGGGATCGTAGAAATAAACCAAAAGACGTTTGCGGAAAACATGAT TACACAGTACGGAATCACCGATGTCTCCAATATTCCAGCGAGTTCTGGAA TGGATCTCGGTCTTAGAGTTGAAGGGGGAACTGGTAGCGATGATGAGTTT GGGGATTACCGTGCCCTTGTAGGGAGTCTGATGTGGATTTCGGTAATGAT AAGACCGGACATTGCGAATGCTCTCCGAGCTTGTGCGCGTCATAGCCATA ACCCTACCGCGCGACATTGGAAGGCACTTCTACGAATAGCCGCGTACGTA AATGCAACGAAAGAGATTGGTTTAAGGTTCGTGCGTGGTTCTGGCCTGAG ACTTTCTGTGTTTGCAGATGCCGATTACGCGGCGGTATCAAATAATAGGC GGTCCGTGTCTGGTGTAGCAGTACTTCTGGGTGACACAGCAATAAGCTGG AAAAGTAGTACGCAGAAATGTGTGACGACTGCAACCTGTGAGACTGAGTA CGTTGTCCTTTGTGATGCAGCAAAAAAGGCGATATTTGATAGAGTGGTTT TGGTTTTTCTGCAGCCGCAGCTGGCCGGGATTTGTGTTGACATTTTTGGT GATAGTGAGGGAGCGATGGCGATCGCAAACAACCCAAGCAGTGCATCGAG AAGCAAATATATTGATCTAAAGTTCCACTTTATTCAGGAACTCGTGCGTT CAAGAGATATTCAGATCCTTCATGTAGGAACGAAGGACCAACACGTGGAC ATTCTAACTAAGGCATTGTGGCGTAAGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig100425:1456..2385-

>mRNA_H-elongata_contig100425.44.1 ID=mRNA_H-elongata_contig100425.44.1|Name=mRNA_H-elongata_contig100425.44.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1860bp|location=Sequence derived from alignment at H-elongata_contig100425:1456..2385- (Himanthalia elongata Himel1 dioecious)
ATGATGGTTGGAGTACATGTCGATTATATAATTGTATCGGGAGAGAGCGA
TGTCTGTGATGCGTTCTTCAGTGAGTTGAAAGAGAGATTTCCTGTGAAAC
ACCAAGGGGAGTTAAAGATGTACACCGGCTGTGCATTCGAACGTGATTGG
GAGAACGGGATCGTAGAAATAAACCAAAAGACGTTTGCGGAAAACATGAT
TACACAGTACGGAATCACCGATGTCTCCAATATTCCAGCGAGTTCTGGAA
TGGATCTCGGTCTTAGAGTTGAAGGGGGAACTGGTAGCGATGATGAGTTT
GGGGATTACCGTGCCCTTGTAGGGAGTCTGATGTGGATTTCGGTAATGAT
AAGACCGGACATTGCGAATGCTCTCCGAGCTTGTGCGCGTCATAGCCATA
ACCCTACCGCGCGACATTGGAAGGCACTTCTACGAATAGCCGCGTACGTA
AATGCAACGAAAGAGATTGGTTTAAGGTTCGTGCGTGGTTCTGGCCTGAG
ACTTTCTGTGTTTGCAGATGCCGATTACGCGGCGGTATCAAATAATAGGC
GGTCCGTGTCTGGTGTAGCAGTACTTCTGGGTGACACAGCAATAAGCTGG
AAAAGTAGTACGCAGAAATGTGTGACGACTGCAACCTGTGAGACTGAGTA
CGTTGTCCTTTGTGATGCAGCAAAAAAGGCGATATTTGATAGAGTGGTTT
TGGTTTTTCTGCAGCCGCAGCTGGCCGGGATTTGTGTTGACATTTTTGGT
GATAGTGAGGGAGCGATGGCGATCGCAAACAACCCAAGCAGTGCATCGAG
AAGCAAATATATTGATCTAAAGTTCCACTTTATTCAGGAACTCGTGCGTT
CAAGAGATATTCAGATCCTTCATGTAGGAACGAAGGACCAACACGTGGAC
ATTCTAACTAAGGCATTGTGGCGTAAGAAGATGATGGTTGGAGTACATGT
CGATTATATAATTGTATCGGGAGAGAGCGATGTCTGTGATGCGTTCTTCA
GTGAGTTGAAAGAGAGATTTCCTGTGAAACACCAAGGGGAGTTAAAGATG
TACACCGGCTGTGCATTCGAACGTGATTGGGAGAACGGGATCGTAGAAAT
AAACCAAAAGACGTTTGCGGAAAACATGATTACACAGTACGGAATCACCG
ATGTCTCCAATATTCCAGCGAGTTCTGGAATGGATCTCGGTCTTAGAGTT
GAAGGGGGAACTGGTAGCGATGATGAGTTTGGGGATTACCGTGCCCTTGT
AGGGAGTCTGATGTGGATTTCGGTAATGATAAGACCGGACATTGCGAATG
CTCTCCGAGCTTGTGCGCGTCATAGCCATAACCCTACCGCGCGACATTGG
AAGGCACTTCTACGAATAGCCGCGTACGTAAATGCAACGAAAGAGATTGG
TTTAAGGTTCGTGCGTGGTTCTGGCCTGAGACTTTCTGTGTTTGCAGATG
CCGATTACGCGGCGGTATCAAATAATAGGCGGTCCGTGTCTGGTGTAGCA
GTACTTCTGGGTGACACAGCAATAAGCTGGAAAAGTAGTACGCAGAAATG
TGTGACGACTGCAACCTGTGAGACTGAGTACGTTGTCCTTTGTGATGCAG
CAAAAAAGGCGATATTTGATAGAGTGGTTTTGGTTTTTCTGCAGCCGCAG
CTGGCCGGGATTTGTGTTGACATTTTTGGTGATAGTGAGGGAGCGATGGC
GATCGCAAACAACCCAAGCAGTGCATCGAGAAGCAAATATATTGATCTAA
AGTTCCACTTTATTCAGGAACTCGTGCGTTCAAGAGATATTCAGATCCTT
CATGTAGGAACGAAGGACCAACACGTGGACATTCTAACTAAGGCATTGTG
GCGTAAGAAG
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