mRNA_H-elongata_contig169975.4337.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169975.4337.1
Unique NamemRNA_H-elongata_contig169975.4337.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169975.4337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169975contigH-elongata_contig169975:574..978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169975.4337.1prot_H-elongata_contig169975.4337.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169975 688..978 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.2865877-UTR-H-elongata_contig169975:573..6871622929991.2865877-UTR-H-elongata_contig169975:573..687Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig169975 574..687 +
1691679237.4835637-UTR-H-elongata_contig169975:573..6871691679237.4835637-UTR-H-elongata_contig169975:573..687Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig169975 574..687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929991.2970822-CDS-H-elongata_contig169975:687..8031622929991.2970822-CDS-H-elongata_contig169975:687..803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169975 688..803 +
1691679237.4935775-CDS-H-elongata_contig169975:687..8031691679237.4935775-CDS-H-elongata_contig169975:687..803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169975 688..803 +
1622929991.308415-CDS-H-elongata_contig169975:827..9781622929991.308415-CDS-H-elongata_contig169975:827..978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169975 828..978 +
1691679237.5035248-CDS-H-elongata_contig169975:827..9781691679237.5035248-CDS-H-elongata_contig169975:827..978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169975 828..978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169975.4337.1

>prot_H-elongata_contig169975.4337.1 ID=prot_H-elongata_contig169975.4337.1|Name=mRNA_H-elongata_contig169975.4337.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MHQRSFGLASSRTTTAGRHPQSFRGGREGGADSSDDVSHQGQPSLSQGLS
FSQGTGSQGAHQNQRETVGFDTSQPSPDMFAPYTYGNNG
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mRNA from alignment at H-elongata_contig169975:574..978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169975.4337.1 ID=mRNA_H-elongata_contig169975.4337.1|Name=mRNA_H-elongata_contig169975.4337.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at H-elongata_contig169975:574..978+ (Himanthalia elongata Himel1 dioecious)
CGCTCCACAAATAGATCATATTCGGGGAGAAGACGGAATGTGGTCAATCC
TGGATGCATCGACGCAATTCTTGGGCACAACAGGCAAACCTTACGCTGAA
ACGTCGGCCTTGCGATGCACCAGAGATCGTTCGGTCTAGCTTCCAGCAGG
ACCACAACAGCTGGAAGGCACCCGCAAAGCTTTAGAGGGGGAAGAGAAGG
CGGTGCAGATTCATCGGACGACGTTTCGCAGTCTGGCAGCTAGGGAGTTT
GCAGCCAGGGTCAGCCTAGCCTCAGCCAGGGCCTTTCCTTTAGCCAAGGC
ACCGGAAGCCAAGGCGCACACCAGAATCAGAGAGAAACTGTTGGGTTCGA
TACGTCACAGCCCAGCCCGGACATGTTCGCACCTTATACTTATGGCAACA
ACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig169975:574..978+

>mRNA_H-elongata_contig169975.4337.1 ID=mRNA_H-elongata_contig169975.4337.1|Name=mRNA_H-elongata_contig169975.4337.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig169975:574..978+ (Himanthalia elongata Himel1 dioecious)
ATGCACCAGAGATCGTTCGGTCTAGCTTCCAGCAGGACCACAACAGCTGG
AAGGCACCCGCAAAGCTTTAGAGGGGGAAGAGAAGGCGGTGCAGATTCAT
CGGACGACGTTTCGCAATGCACCAGAGATCGTTCGGTCTAGCTTCCAGCA
GGACCACAACAGCTGGAAGGCACCCGCAAAGCTTTAGAGGGGGAAGAGAA
GGCGGTGCAGATTCATCGGACGACGTTTCGCACCAGGGTCAGCCTAGCCT
CAGCCAGGGCCTTTCCTTTAGCCAAGGCACCGGAAGCCAAGGCGCACACC
AGAATCAGAGAGAAACTGTTGGGTTCGATACGTCACAGCCCAGCCCGGAC
ATGTTCGCACCTTATACTTATGGCAACAACGGTCCAGGGTCAGCCTAGCC
TCAGCCAGGGCCTTTCCTTTAGCCAAGGCACCGGAAGCCAAGGCGCACAC
CAGAATCAGAGAGAAACTGTTGGGTTCGATACGTCACAGCCCAGCCCGGA
CATGTTCGCACCTTATACTTATGGCAACAACGGT
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