mRNA_H-elongata_contig16972.4326.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16972.4326.1
Unique NamemRNA_H-elongata_contig16972.4326.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Match: D7FKR6_ECTSI (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKR6_ECTSI)

HSP 1 Score: 414 bits (1064), Expect = 1.350e-143
Identity = 191/236 (80.93%), Postives = 213/236 (90.25%), Query Frame = 1
Query:    1 KLIMSSSPSTRFDGGNIDGLKESDLKIPDTFLELYAESKEKGETAVLDACSDKLLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVFGNGKNKVSFTYIDNYCHGLILGYDALYKGSPVLGKFYIVTDGGWQYFWRVLDSAGIAMGFQSLFSKTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAERDLKYKPIVSFEDGFSRTQDWLKEEWLPKFEAKY 708
            KLIMSSSPSTRFDG +IDGLKE +L+ P  FL+LYAESK KGE AVL+ACSD LLTVAIAPHQIYGPRDNLF+P +LEAAGKGQLRVFGNGKNKVSFTY+DNYCHGLILGYDALY+GSP LG FYIVTDGGWQYFWRV+D AG+AMGF+SLF K KLP LLMV VG +C  IGW LGRKL++NPFTVKML+IHRWFDISAAERDLKYKPIV+FE+GFS+T  WLKE+WLP F+AK+
Sbjct:  112 KLIMSSSPSTRFDGNDIDGLKEDELEYPKKFLQLYAESKAKGEVAVLEACSDSLLTVAIAPHQIYGPRDNLFMPSLLEAAGKGQLRVFGNGKNKVSFTYLDNYCHGLILGYDALYQGSPALGNFYIVTDGGWQYFWRVIDGAGMAMGFKSLFDKMKLPTLLMVPVGYVCAGIGWILGRKLRVNPFTVKMLIIHRWFDISAAERDLKYKPIVTFEEGFSKTIAWLKEDWLPTFKAKH 347          
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Match: A0A7S3Y444_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y444_HETAK)

HSP 1 Score: 327 bits (837), Expect = 4.480e-109
Identity = 154/231 (66.67%), Postives = 181/231 (78.35%), Query Frame = 1
Query:    1 KLIMSSSPSTRFDGGNIDGLKESDLKIPDTFLELYAESKEKGETAVLDACSDKLLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVFGNGKNKVSFTYIDNYCHGLILGYDALYKGSPVLGKFYIVTDGGWQYFWRVLDSAGIAMGFQSLFSKTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAERDLKYKPIVSFEDGFSRTQDWLKEEWLPK 693
            KL+ SSSPSTRFDG +IDGLKES +  P  FLELYAE+K  GE AV +ACS +L TVAIAPHQ+YGPRD LFLP +LEA G G+LRVFG G+NKVSF ++DNY HGLILGYDALY+ SP L KFYIVTDG  Q FWRVLD+AG AMGF SLF K  LP  L++ V  I   +GW LGR+ K+NPFTVKML IHRWF+I AA +DL Y+PIV+FE+G++ T  W +E WLPK
Sbjct:  117 KLVYSSSPSTRFDGSDIDGLKESQMSYPKKFLELYAETKAMGERAVFEACSPELRTVAIAPHQVYGPRDTLFLPNLLEAIGNGKLRVFGRGENKVSFCHVDNYAHGLILGYDALYEHSPALAKFYIVTDGPPQKFWRVLDAAGQAMGFTSLFRKFHLPVFLLMGVAYILELLGWMLGRRFKVNPFTVKMLTIHRWFNIEAARQDLGYEPIVTFENGWADTMHWFRENWLPK 347          
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Match: A0A7S2UZ88_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ88_9STRA)

HSP 1 Score: 320 bits (819), Expect = 2.330e-106
Identity = 143/231 (61.90%), Postives = 184/231 (79.65%), Query Frame = 1
Query:    1 KLIMSSSPSTRFDGGNIDGLKESDLKIPDTFLELYAESKEKGETAVLDACSDKLLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVFGNGKNKVSFTYIDNYCHGLILGYDALYKGSPVLGKFYIVTDGGWQYFWRVLDSAGIAMGFQSLFSKTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAERDLKYKPIVSFEDGFSRTQDWLKEEWLPK 693
            +L+MSSSPSTRFDG +I+GL   DLKIPD F+++YAE+K  GE A  DAC D L+TVAIAPHQ+YGPRD+LFL  +L   G G+LR+FG+GKN VSF ++DNYCHGLILGYDAL+KGSP LG+FYIVTDG  Q FW+V+D AG+AMGF+SL++K  LP +L++ +  IC  +G  L RK K+ PF+VKML IHR+FDI AA++DLKY+P++ F+ G+  T DW K+ WLPK
Sbjct:  116 RLVMSSSPSTRFDGNDIEGLGVEDLKIPDKFVQIYAETKAMGEKACRDACCDTLMTVAIAPHQVYGPRDSLFLNNLLHPIGNGKLRIFGSGKNMVSFCHVDNYCHGLILGYDALHKGSPALGRFYIVTDGPPQQFWKVIDQAGVAMGFRSLWTKFHLPIMLLMVLAHICDFLGMLLNRKFKLTPFSVKMLTIHRYFDIEAAKKDLKYEPLIEFDKGWLETIDWFKQNWLPK 346          
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Match: A0A835Z5A6_9STRA (Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5A6_9STRA)

HSP 1 Score: 315 bits (806), Expect = 2.650e-104
Identity = 142/230 (61.74%), Postives = 179/230 (77.83%), Query Frame = 1
Query:    1 KLIMSSSPSTRFDGGNIDGLKESDLKIPDTFLELYAESKEKGETAVLDACSDKLLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVFGNGKNKVSFTYIDNYCHGLILGYDALYKGSPVLGKFYIVTDGGWQYFWRVLDSAGIAMGFQSLFSKTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAERDLKYKPIVSFEDGFSRTQDWLKEEWLP 690
            KL+MS SPSTRFDG +IDGL E+ LK P  +L+LYAE+K   E  +L AC D+L T++IAPHQ+YGPRD+LFL  +L  AG+G+LR+FG G NK SFTY+DNYCHGLILGYDAL  GSP LGKFYIVTDGG+Q FW+VLD A +AMGF S+++KTKLP LL++ +  IC  IG+ L  K+++NPF VKML IHRWF+I AA +DL YKP+ +F+ G+  T +W K  WLP
Sbjct:  113 KLVMSGSPSTRFDGNDIDGLTEAQLKYPKKYLQLYAETKALAEQEILAACCDELQTISIAPHQVYGPRDSLFLVNLLTVAGQGRLRIFGKGDNKCSFTYVDNYCHGLILGYDALRPGSPALGKFYIVTDGGYQIFWKVLDHAVVAMGFTSIWTKTKLPYLLLMVLAYICNVIGFLLRTKMRLNPFNVKMLTIHRWFNIDAATKDLGYKPLYTFDQGWDTTCEWFKTVWLP 342          
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Match: A0A7S4LLS6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LLS6_9EUGL)

HSP 1 Score: 303 bits (775), Expect = 3.030e-99
Identity = 140/228 (61.40%), Postives = 178/228 (78.07%), Query Frame = 1
Query:    1 KLIMSSSPSTRFDGGNIDGLKESDLKIPDTFLELYAESKEKGETAVLDACSDK--LLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVFGNGKNKVSFTYIDNYCHGLILGYDALYKGSPVLGKFYIVTDGGWQYFWRVLDSAGIAMGFQSLFSKTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAERDLKYKPIVSFEDGFSRTQDWLKE 678
            +++MSSSPSTR DGG+I+GL+E  +KIP  FL+ YAESK  GE A+ +AC+++   LTVA+APHQ+YGPRD LFLP +L A+  G+LR+FG+G+N++S  ++DNYCHGLILGY ALYKGSP LGKFYIVTDGG + FW +LD A + +G  SLF+KTKLP  LM+TV  IC  +G+ L RK K+ PFTVKML IHRWFDIS AERDL YKP++ FEDG+     W K+
Sbjct:  131 RIVMSSSPSTRMDGGHIEGLREDQMKIPKKFLQDYAESKAAGEVALREACNEEEDFLTVAVAPHQVYGPRDALFLPNLLSASYNGKLRIFGDGENEISVCHVDNYCHGLILGYLALYKGSPALGKFYIVTDGGKKKFWHILDDAMVQLGCTSLFTKTKLPIWLMMTVAYICNVLGFILRRKFKLTPFTVKMLYIHRWFDISNAERDLGYKPLIKFEDGWQDMIAWFKD 358          
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Match: A0A448Z5Q8_9STRA (3Beta_HSD domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z5Q8_9STRA)

HSP 1 Score: 300 bits (767), Expect = 4.620e-98
Identity = 138/239 (57.74%), Postives = 179/239 (74.90%), Query Frame = 1
Query:    1 KLIMSSSPSTRFDGGNIDGLKESDLKIPDTFLELYAESKEKGETAVLDACSDKLLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVFGNGKNKVSFTYIDNYCHGLILGYDALYKGSPVLGKFYIVTDGGWQYFWRVLDSAGIAMGFQSLFSKTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAERDLKYKPIVSFEDGFSRTQDWLKEEWLPKFEAKYSKK 717
            KL+ SSSPSTRF GG+++GL E D+ IPD F+ LYAE+K  GE AV  ACSD LLT+++APHQ+YG  D+LFLPK+LEAAG G LRVFG G+NK+S  +IDNY HGL+ G DALYK SP L KFY++TD   QYFW++L+ A IAMGF  LFSK  LP  L+ +V  IC  + +  G++ K+ PFTVKML+IHR+F+I  A+RDL YKP++SFE G+  T +W K  WLP+++   +KK
Sbjct:  140 KLVYSSSPSTRFRGGDVEGLSEDDMPIPDQFVALYAETKAAGEKAVEKACSDSLLTISVAPHQLYGEYDSLFLPKLLEAAGSGNLRVFGKGENKISLCHIDNYSHGLLCGADALYKNSPALAKFYVITDDEPQYFWKILNQAVIAMGFADLFSKFHLPVWLLYSVAYICDFVSFLTGKQFKLKPFTVKMLIIHRYFNIKNAKRDLLYKPLISFEKGWPETIEWFKINWLPEYQKVGTKK 378          
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Match: A0A7S2SV77_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV77_9STRA)

HSP 1 Score: 301 bits (770), Expect = 4.660e-98
Identity = 142/243 (58.44%), Postives = 181/243 (74.49%), Query Frame = 1
Query:    1 KLIMSSSPSTRFDGGNIDGLKESDL-KIPDT-FLELYAESKEKGETAVLDACSDKLLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVFGNGKNKVSFTYIDNYCHGLILGYDALYKGSPVLGKFYIVTDG-------GWQYFWRVLDSAGIAMGFQSLFSKTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAERDLKYKPIVSFEDGFSRTQDWLKEEWLPKFEA 702
            KLI SSSPSTRFDG ++DGL E  +  IP   +L+ YA++K  GE AV  ACS+ L+TVAIAPHQ+YGPRDNLFLP +LE AG+G LR+FG G N++ F+++DNYCHGLILG  ALY GSP LGKFYIVTDG       G   FW  LD A +AMGFQS++SK KLP   ++ +  +C  IGW +G K+K+NPF V++L +HRWFDISAAE DLKYKP++S++ G++ T  W KE WLP F++
Sbjct:  134 KLIFSSSPSTRFDGSDVDGLSEEQMPSIPQRKYLQDYAKTKAMGELAVSAACSEDLMTVAIAPHQVYGPRDNLFLPNMLEVAGQGMLRIFGGGHNRICFSHVDNYCHGLILGSTALYPGSPALGKFYIVTDGSTHPDPRGCCEFWVELDKAVVAMGFQSIWSKFKLPVWFLMPIAYLCLFIGWIIGVKIKLNPFAVRVLTMHRWFDISAAENDLKYKPVISYKQGWAETIAWFKENWLPDFQS 376          
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Match: A0A061R3Y9_9CHLO (Nad-dependent steroid dehydrogenase-like protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R3Y9_9CHLO)

HSP 1 Score: 296 bits (758), Expect = 6.220e-97
Identity = 140/240 (58.33%), Postives = 178/240 (74.17%), Query Frame = 1
Query:    1 KLIMSSSPSTRFDGGNIDGLKESDLKI--PDTFLELYAESKEKGETAVLDACSDKLLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVFGNGKNKVSFTYIDNYCHGLILGYDALYKGSPVLGKFYIVTDGGWQYFWRVLDSAGIAMGFQSLFSKTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAERDLKYKPIVSFEDGFSRTQDWL---KEEWLPKFEAK 705
            K++MSSSPSTRFDG ++ GL ES LKI  P  FL+ YAE+K  GE A+ +AC ++L+TVAIAPHQ+YGPRD+LFLP +L AA  G+LR+FG G NKV+FT++DNYCH LILGYDALY GS  LG+FYI TDGG + FW VLD A + MG+  L +K KLP  LM+    IC  IG+  GRK+K+ PF V+ML+I RWF+I AA++DL YKP++SFE G+  T +W    KE W+ K E K
Sbjct:  112 KIVMSSSPSTRFDGSSVRGLAESQLKIQDPGKFLQAYAETKAMGEIALREACCEELMTVAIAPHQVYGPRDSLFLPSLLHAAKTGKLRIFGKGDNKVAFTHVDNYCHALILGYDALYPGSAALGQFYIATDGGSELFWHVLDQAVVRMGYTPLRNKLKLPTGLMMVAAYICNLIGYVTGRKMKLTPFAVRMLVIDRWFNIDAAKKDLGYKPLISFEHGWQETIEWFADNKEWWIAKAEGK 351          
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Match: A0A1E7FGB3_9STRA (NAD(P)-binding protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGB3_9STRA)

HSP 1 Score: 296 bits (759), Expect = 7.500e-97
Identity = 132/234 (56.41%), Postives = 177/234 (75.64%), Query Frame = 1
Query:    1 KLIMSSSPSTRFDGGNIDGLKESDLKIPDTFLELYAESKEKGETAVLDACSDKLLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVFGNGKNKVSFTYIDNYCHGLILGYDALYKGSPVLGKFYIVTDGGWQYFWRVLDSAGIAMGFQSLFSKTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAERDLKYKPIVSFEDGFSRTQDWLKEEWLPKFEA 702
            KL+ SSSPSTRF GG+++GL E ++ IPD F+ LYAE+K KGE AV  ACSD LLTV++APHQ+YGP D LFLPK+LEAAG G+LR+FG G+NK+S  +IDNYC GL+ G D+LY+GSP L  FY+VTD G QYFW+ ++ AG+AMGF  L +K  LP  L+ +V   C  + +  G++ K+ PFTVKML+IHR+F+I  A RDL+YKP++SF+ G+  T +W +  WLP ++A
Sbjct:  140 KLVYSSSPSTRFTGGDVEGLSEDEMPIPDKFVALYAETKAKGEKAVSQACSDTLLTVSVAPHQLYGPYDTLFLPKLLEAAGSGKLRIFGKGQNKISLCHIDNYCVGLLCGADSLYRGSPTLSNFYVVTDDGPQYFWKTINQAGVAMGFVDLETKFHLPVWLLYSVAYFCNFLTFLTGKQFKLKPFTVKMLIIHRYFNIKNARRDLQYKPLISFDKGWPDTIEWFRINWLPDYKA 373          
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Match: F2UJP1_SALR5 (Reductase with NAD or NADP as acceptor n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UJP1_SALR5)

HSP 1 Score: 297 bits (760), Expect = 9.850e-97
Identity = 144/247 (58.30%), Postives = 180/247 (72.87%), Query Frame = 1
Query:    1 KLIMSSSPSTRFDGGNIDGLKESD---LKIPDTFLELYAESKEKGETAVLDACSDKLLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVF-----GNGKNKVSFTYIDNYCHGLILGYDALYKGSPVLGKFYIVTDG-------GWQYFWRVLDSAGIAMGFQSLFSKTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAERDLKYKPIVSFEDGFSRTQDWLKEEWLPKF 696
            KL+MSSSPSTRFDG ++DGL E+    L +P  +++ YAE+K  GE AV  ACS  L+TV++APHQ+YGPRDNLF+P ILEAAG G LR+F     G G NKV FT++DNYCHGL+    AL+K SP LGKFYIVTDG       G+ +FW+VLD    AMGF S++SK KLP  L++ +  IC  IGW  GRKLK+NPF V++L +HRWFDIS AERDLK+ PI+SF DG+  T D+ KE WLP+F
Sbjct:  131 KLVMSSSPSTRFDGSDVDGLTEAQMPALPLP-RYMQTYAETKAMGEMAVTAACSPSLMTVSVAPHQVYGPRDNLFMPNILEAAGTGVLRIFSARRTGYGMNKVCFTHVDNYCHGLMCAEKALFKNSPALGKFYIVTDGRTHPSPLGYAHFWQVLDEPIKAMGFPSIWSKFKLPVWLLMPIAHICDFIGWLTGRKLKLNPFNVRVLTMHRWFDISVAERDLKFTPIISFTDGWRDTADYFKEHWLPRF 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16972.4326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKR6_ECTSI1.350e-14380.93Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
A0A7S3Y444_HETAK4.480e-10966.67Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZ88_9STRA2.330e-10661.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z5A6_9STRA2.650e-10461.74Sterol-4-alpha-carboxylate 3-dehydrogenase, decarb... [more]
A0A7S4LLS6_9EUGL3.030e-9961.40Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A448Z5Q8_9STRA4.620e-9857.743Beta_HSD domain-containing protein n=1 Tax=Pseudo... [more]
A0A7S2SV77_9STRA4.660e-9858.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A061R3Y9_9CHLO6.220e-9758.33Nad-dependent steroid dehydrogenase-like protein n... [more]
A0A1E7FGB3_9STRA7.500e-9756.41NAD(P)-binding protein n=1 Tax=Fragilariopsis cyli... [more]
F2UJP1_SALR59.850e-9758.30Reductase with NAD or NADP as acceptor n=1 Tax=Sal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16972contigH-elongata_contig16972:3..2642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.1
Seed ortholog evalue1.7e-112
Seed eggNOG ortholog2880.D7FKR6
KEGG rclassRC01163
KEGG koko:K07748
KEGG ReactionR07494
KEGG Pathwayko00100,ko01100,ko01130,map00100,map01100,map01130
KEGG ModuleM00101
EggNOG free text desc.3-beta-hydroxy-delta5-steroid dehydrogenase activity
EggNOG OGsCOG0451@1,KOG1430@2759
EC1.1.1.170
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating
Ec32 orthologEc-21_001850.1
Exons6
Model size720
Cds size711
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.217476-UTR-H-elongata_contig16972:2..111622929990.217476-UTR-H-elongata_contig16972:2..11Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16972 3..11 +
1691679236.9312892-UTR-H-elongata_contig16972:2..111691679236.9312892-UTR-H-elongata_contig16972:2..11Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16972 3..11 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929990.2327473-CDS-H-elongata_contig16972:11..1011622929990.2327473-CDS-H-elongata_contig16972:11..101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 12..101 +
1691679236.9434662-CDS-H-elongata_contig16972:11..1011691679236.9434662-CDS-H-elongata_contig16972:11..101Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 12..101 +
1622929990.254796-CDS-H-elongata_contig16972:408..5121622929990.254796-CDS-H-elongata_contig16972:408..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 409..512 +
1691679236.9530323-CDS-H-elongata_contig16972:408..5121691679236.9530323-CDS-H-elongata_contig16972:408..512Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 409..512 +
1622929990.2703035-CDS-H-elongata_contig16972:897..10421622929990.2703035-CDS-H-elongata_contig16972:897..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 898..1042 +
1691679236.9624693-CDS-H-elongata_contig16972:897..10421691679236.9624693-CDS-H-elongata_contig16972:897..1042Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 898..1042 +
1622929990.2876177-CDS-H-elongata_contig16972:1369..14201622929990.2876177-CDS-H-elongata_contig16972:1369..1420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 1370..1420 +
1691679236.9716613-CDS-H-elongata_contig16972:1369..14201691679236.9716613-CDS-H-elongata_contig16972:1369..1420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 1370..1420 +
1622929990.3056617-CDS-H-elongata_contig16972:1835..19941622929990.3056617-CDS-H-elongata_contig16972:1835..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 1836..1994 +
1691679236.9809883-CDS-H-elongata_contig16972:1835..19941691679236.9809883-CDS-H-elongata_contig16972:1835..1994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 1836..1994 +
1622929990.3268878-CDS-H-elongata_contig16972:2480..26421622929990.3268878-CDS-H-elongata_contig16972:2480..2642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 2481..2642 +
1691679236.9902449-CDS-H-elongata_contig16972:2480..26421691679236.9902449-CDS-H-elongata_contig16972:2480..2642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16972 2481..2642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16972.4326.1prot_H-elongata_contig16972.4326.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16972 12..2642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16972.4326.1

>prot_H-elongata_contig16972.4326.1 ID=prot_H-elongata_contig16972.4326.1|Name=mRNA_H-elongata_contig16972.4326.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp
MSSSPSTRFDGGNIDGLKESDLKIPDTFLELYAESKEKGETAVLDACSDK
LLTVAIAPHQIYGPRDNLFLPKILEAAGKGQLRVFGNGKNKVSFTYIDNY
CHGLILGYDALYKGSPVLGKFYIVTDGGWQYFWRVLDSAGIAMGFQSLFS
KTKLPALLMVTVGQICGAIGWCLGRKLKINPFTVKMLLIHRWFDISAAER
DLKYKPIVSFEDGFSRTQDWLKEEWLPKFEAKYSKK*
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mRNA from alignment at H-elongata_contig16972:3..2642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16972.4326.1 ID=mRNA_H-elongata_contig16972.4326.1|Name=mRNA_H-elongata_contig16972.4326.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2640bp|location=Sequence derived from alignment at H-elongata_contig16972:3..2642+ (Himanthalia elongata Himel1 dioecious)
AAGCTCATCATGTCCAGCAGCCCCAGTACGAGATTCGACGGCGGCAACAT CGACGGCCTCAAGGAGAGCGATCTCAAGATACCGGACACGTTCTTAGAGG TGGGCAGGAAGAATGGCACTAGAATAGAATAGACTATAGACTAGACTAGA CTAGACGAGTGTACTCGGCTCTGTGTCATGCATGATATGTTAGGCTACTG CAAGAGTGTATTTGATTAGATTAAATTTAATTCGTACATATTTGTTCGCT GTAAAATCTGACTGACACACCATTAATTTACTAATACTAATATTATTAAT TAAAACGATTATTATTATTATTATTATTATTATTACTTTATAGTATTGCT CATATCATTATTATTACATAATAGTAATGCTCATATCATTATTACTACTG TGATAGCTGTATGCGGAGAGCAAGGAGAAGGGGGAAACTGCCGTGTTGGA TGCCTGTTCGGACAAGCTCCTCACCGTCGCGATCGCACCGCATCAAATTT ACGGGCCAAGGTGAGATCACTGTATACCGTGTTCCNNNNNNNNNNTACAC TCTTGTCACCTTGTTATACATTATACCGTCTACCGTATGGTGTTGTCACC TTGTTATACATTATACCGTCTACCGTATGGTGTTGTCACCTTGTTATACA TTATACCGTCTACCGTATGGTGTTGACGTCTTCATCGTTGTGGGTGACGT CACGATACCTTAGTCTGGGAGGCAGCAGGCATGCATGTTAAAAAAAACTC AGATAGGGTGTCGTGGTATGACACGACGAACAAGCTCCTCACTCGTGATT CATTCCAGTGTTTTTAGTCCCCAGAGTTGAATGGCACTTGTAATTGTGGG TTATGCAAATGACTCGCACCTGGTTGTATTGATTATATATTGCAGGGATA ACCTGTTCCTCCCTAAAATATTGGAGGCGGCGGGGAAGGGCCAGCTGCGC GTTTTCGGTAATGGTAAAAACAAGGTGTCCTTCACCTACATCGACAACTA CTGCCACGGGTTGATACTTGGATATGACGCCTTGTACAAGGTGTGCGCTA GTTTCGTGCTCACAAGAACTAGGGCTCTCTTTACTAATAATGACTATGAC TAACATTATCGACCCAAGTACGATATGAGGGTCGACAAGGGTCAGTGGAG CCGTACGATGTCGATGTCGAAGTTTGCCTGCCGCTGCGGTCGATATCGCC CCTCTTGTGAACTTTGTATATTTTAATCGAGTGATTACAGAGCCTACTGC AATAGATCGATCGATCGATTCACACTATTAATATATCAATGACGCCCAAC ACGATATACGGTATTTACCGTCGGGACGGTCTCTCTCTTCCATCGGGCGC ATGTGTCCGACCTACAGGGTTCGCCGGTATTGGGTAAGTTCTACATCGTC ACGGACGGGGGTTGGCAGGTGAGCAGATCTCTCAAAAGTCGCCCATGAAA ATGGAAAAATCACTCGCTTCATTCACAAGACGCCGACATTTCTTTGTGGC AATTTGTGTGCGTTTATCGCCTGTAACCGAGTTCAAGGTACGTCATGGGC CTGGGGTCCTTTCGCTCTCCAACTCTTTGGAGCTGCATTTCGACTATCAT ACTTGAAGTCTTGAAGTCTAAAGACAAGATGCTCGTTGAACACTAGCGTA AGCCTAACTGAAGATAATAGAGGCAGAGGTAGAGGCAGCTGTAGAGCTAT TGGCGCTAGCTGTTCATTGCACCGCGTGCTGTATGGAGATGATGGAGGCT TCGCCTAGAAGACATGAGTCTTAATACGTGCCTCGGCTGTATACCGTACC GTACTGTACTGTACCGTACCGTCCTGATTGTAGTATTTCTGGAGGGTCCT CGACAGCGCTGGCATAGCGATGGGCTTTCAATCACTATTTTCCAAGACCA AGCTGCCCGCGCTCCTAATGGTGACGGTTGGTCAAATCTGCGGCGCCATT GGATGGTGCCTAGGTCGAAAACTGAAGATCAACCCCTTCACGGTGAGAAT AATGTCCCATACCATCCGGCGGTCTTCTGTGTCCTCTACCCCGAGAGGAA GTTTACCCTTGTCGACCATCACAATCGAGGAAGGCGATATGTTTCGATAT GTTCCTGACCTAATAATTCAAAAAATCGGCGCCAAAGATTGATCGGATTT ATTTAGTTGGTTGATTTGCTTTACCTGTAAGTCACGAGCGATGGACGCGT TCCTCGGGAACGCTTGGGGTCGTTTGTTCCAATGTATTGATATACAATGT CCTGTGAGGTAATCGCTGTACATCTATCGCGTCTGGTATAAAACGTCATA AGCGCATTGAAAAGTATGATTATCTATGCGACCCCGGCTCCTTTTTCAAA ACCGACCTATACTAAGTATACTCTCTATACGATGTAGCATCACTGTAGAA AAAAATGGCGGTTCTAGGTGAACCATTGCGCCTTACTGCATTCTCCTCCA CATCGCATGTCTCCAATCTTCGACGCAGGTGAAGATGCTTCTCATCCACC GGTGGTTCGACATCTCGGCAGCCGAGCGCGACCTTAAGTACAAACCCATC GTAAGCTTCGAGGATGGCTTCTCCAGAACACAGGACTGGTTGAAGGAAGA ATGGCTGCCCAAGTTCGAAGCGAAATACTCGAAAAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig16972:3..2642+

>mRNA_H-elongata_contig16972.4326.1 ID=mRNA_H-elongata_contig16972.4326.1|Name=mRNA_H-elongata_contig16972.4326.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig16972:3..2642+ (Himanthalia elongata Himel1 dioecious)
ATGTCCAGCAGCCCCAGTACGAGATTCGACGGCGGCAACATCGACGGCCT
CAAGGAGAGCGATCTCAAGATACCGGACACGTTCTTAGAGATGTCCAGCA
GCCCCAGTACGAGATTCGACGGCGGCAACATCGACGGCCTCAAGGAGAGC
GATCTCAAGATACCGGACACGTTCTTAGAGCTGTATGCGGAGAGCAAGGA
GAAGGGGGAAACTGCCGTGTTGGATGCCTGTTCGGACAAGCTCCTCACCG
TCGCGATCGCACCGCATCAAATTTACGGGCCAAGCTGTATGCGGAGAGCA
AGGAGAAGGGGGAAACTGCCGTGTTGGATGCCTGTTCGGACAAGCTCCTC
ACCGTCGCGATCGCACCGCATCAAATTTACGGGCCAAGGGATAACCTGTT
CCTCCCTAAAATATTGGAGGCGGCGGGGAAGGGCCAGCTGCGCGTTTTCG
GTAATGGTAAAAACAAGGTGTCCTTCACCTACATCGACAACTACTGCCAC
GGGTTGATACTTGGATATGACGCCTTGTACAAGGGATAACCTGTTCCTCC
CTAAAATATTGGAGGCGGCGGGGAAGGGCCAGCTGCGCGTTTTCGGTAAT
GGTAAAAACAAGGTGTCCTTCACCTACATCGACAACTACTGCCACGGGTT
GATACTTGGATATGACGCCTTGTACAAGGGTTCGCCGGTATTGGGTAAGT
TCTACATCGTCACGGACGGGGGTTGGCAGGGTTCGCCGGTATTGGGTAAG
TTCTACATCGTCACGGACGGGGGTTGGCAGTATTTCTGGAGGGTCCTCGA
CAGCGCTGGCATAGCGATGGGCTTTCAATCACTATTTTCCAAGACCAAGC
TGCCCGCGCTCCTAATGGTGACGGTTGGTCAAATCTGCGGCGCCATTGGA
TGGTGCCTAGGTCGAAAACTGAAGATCAACCCCTTCACGTATTTCTGGAG
GGTCCTCGACAGCGCTGGCATAGCGATGGGCTTTCAATCACTATTTTCCA
AGACCAAGCTGCCCGCGCTCCTAATGGTGACGGTTGGTCAAATCTGCGGC
GCCATTGGATGGTGCCTAGGTCGAAAACTGAAGATCAACCCCTTCACGGT
GAAGATGCTTCTCATCCACCGGTGGTTCGACATCTCGGCAGCCGAGCGCG
ACCTTAAGTACAAACCCATCGTAAGCTTCGAGGATGGCTTCTCCAGAACA
CAGGACTGGTTGAAGGAAGAATGGCTGCCCAAGTTCGAAGCGAAATACTC
GAAAAAATGAGTGAAGATGCTTCTCATCCACCGGTGGTTCGACATCTCGG
CAGCCGAGCGCGACCTTAAGTACAAACCCATCGTAAGCTTCGAGGATGGC
TTCTCCAGAACACAGGACTGGTTGAAGGAAGAATGGCTGCCCAAGTTCGA
AGCGAAATACTCGAAAAAATGA
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