mRNA_H-elongata_contig10521.433.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10521.433.1
Unique NamemRNA_H-elongata_contig10521.433.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10521.433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10521contigH-elongata_contig10521:1393..1864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size472
Cds size357
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10521.433.1prot_H-elongata_contig10521.433.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10521 1492..1848 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.488001-UTR-H-elongata_contig10521:1392..14911622929584.488001-UTR-H-elongata_contig10521:1392..1491Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10521 1393..1491 +
1691679080.1028862-UTR-H-elongata_contig10521:1392..14911691679080.1028862-UTR-H-elongata_contig10521:1392..1491Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10521 1393..1491 +
1622929584.523108-UTR-H-elongata_contig10521:1848..18641622929584.523108-UTR-H-elongata_contig10521:1848..1864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10521 1849..1864 +
1691679080.123722-UTR-H-elongata_contig10521:1848..18641691679080.123722-UTR-H-elongata_contig10521:1848..1864Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10521 1849..1864 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929584.5096793-CDS-H-elongata_contig10521:1491..18481622929584.5096793-CDS-H-elongata_contig10521:1491..1848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10521 1492..1848 +
1691679080.1114419-CDS-H-elongata_contig10521:1491..18481691679080.1114419-CDS-H-elongata_contig10521:1491..1848Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10521 1492..1848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10521.433.1

>prot_H-elongata_contig10521.433.1 ID=prot_H-elongata_contig10521.433.1|Name=mRNA_H-elongata_contig10521.433.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MGVSISASIWDTNDACRHYHRFGRRPGWSILAGLNRSSSSSRCSSRCPLG
YSCHILIRLRCQIMGAKFPKHYTKTVHTETICCLQFQEVQNSCTVLQKHD
GSNRSRWRHGPGVARERS*
back to top

mRNA from alignment at H-elongata_contig10521:1393..1864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10521.433.1 ID=mRNA_H-elongata_contig10521.433.1|Name=mRNA_H-elongata_contig10521.433.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=472bp|location=Sequence derived from alignment at H-elongata_contig10521:1393..1864+ (Himanthalia elongata Himel1 dioecious)
GAAGTAATACATGAGGATAACGATATTTCGTTGGAAGACTTATTATGTGG
CGGGCCGGGCCAGATCAGCTCGGACAACCTCGTCGTAAACTCCCAGGCGA
TGGGAGTATCAATATCAGCATCAATATGGGACACGAATGACGCTTGTCGC
CACTACCATCGATTTGGCCGTCGACCTGGGTGGAGTATTCTGGCGGGCCT
CAATCGGAGCAGCAGCAGCAGCAGATGCAGCAGCAGATGCCCCTTGGGAT
ACAGTTGTCACATACTCATACGCTTACGCTGTCAAATAATGGGAGCTAAG
TTTCCAAAGCATTATACTAAAACCGTTCATACCGAAACCATTTGCTGTCT
ACAGTTTCAAGAAGTACAGAACTCGTGTACCGTACTGCAGAAGCACGACG
GCTCCAATCGATCGCGCTGGAGACACGGACCTGGTGTAGCCAGAGAGCGC
TCATGATGAAGAACAGCTCGAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig10521:1393..1864+

>mRNA_H-elongata_contig10521.433.1 ID=mRNA_H-elongata_contig10521.433.1|Name=mRNA_H-elongata_contig10521.433.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig10521:1393..1864+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGTATCAATATCAGCATCAATATGGGACACGAATGACGCTTGTCG
CCACTACCATCGATTTGGCCGTCGACCTGGGTGGAGTATTCTGGCGGGCC
TCAATCGGAGCAGCAGCAGCAGCAGATGCAGCAGCAGATGCCCCTTGGGA
TACAGTTGTCACATACTCATACGCTTACGCTGTCAAATAATGGGAGCTAA
GTTTCCAAAGCATTATACTAAAACCGTTCATACCGAAACCATTTGCTGTC
TACAGTTTCAAGAAGTACAGAACTCGTGTACCGTACTGCAGAAGCACGAC
GGCTCCAATCGATCGCGCTGGAGACACGGACCTGGTGTAGCCAGAGAGCG
CTCATGAATGGGAGTATCAATATCAGCATCAATATGGGACACGAATGACG
CTTGTCGCCACTACCATCGATTTGGCCGTCGACCTGGGTGGAGTATTCTG
GCGGGCCTCAATCGGAGCAGCAGCAGCAGCAGATGCAGCAGCAGATGCCC
CTTGGGATACAGTTGTCACATACTCATACGCTTACGCTGTCAAATAATGG
GAGCTAAGTTTCCAAAGCATTATACTAAAACCGTTCATACCGAAACCATT
TGCTGTCTACAGTTTCAAGAAGTACAGAACTCGTGTACCGTACTGCAGAA
GCACGACGGCTCCAATCGATCGCGCTGGAGACACGGACCTGGTGTAGCCA
GAGAGCGCTCATGA
back to top