mRNA_H-elongata_contig169478.4310.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169478.4310.1
Unique NamemRNA_H-elongata_contig169478.4310.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig169478.4310.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.050e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:  109 EKLSSDLNLPEELTSVAVGVNGSVPFRPIFFVDGGELYLEGVTIRGGNATKSTENTIASGGEIYAIASNVSISGCVFEENFAEDYG 366
            ++L S L+LP +  S AV     +   PIFFV+GG+L L  + +R GNAT  +  T+ SGG ++A+ SNV+I+GC+FE NFA   G
Sbjct:  128 DELWSGLSLPRDDLSSAVVAGSGLSDGPIFFVNGGQLSLNALAVRDGNATGDSNATVDSGGGVHAVQSNVTITGCLFENNFARVLG 213
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BLAST of mRNA_H-elongata_contig169478.4310.1 vs. uniprot
Match: D7G167_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G167_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 4.290e-11
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 1 
Query:  181 PFRPIFFVDGGELYLEGVTIRGGNATKST-------------------------ENTIA----SGGEIYAIASNVSISGCVFEENFAEDYGVGIYANLST 393
            P  P+FFVDGG+L+L+ + +RGG  + ST                         E  IA    SGG ++AI SNV+++GC FEEN+A+ +G GI+AN ST
Sbjct:    3 PTGPLFFVDGGQLFLDSLAVRGGYTSNSTGSFTYAASTDAAADGTNSTTTSGVNETAIATVVISGGGVHAIDSNVTVTGCEFEENYADYWGGGIFANGST 102
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BLAST of mRNA_H-elongata_contig169478.4310.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.010e-10
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 1 
Query:  175 SVPFRPIFFVDGGELYLEGVTIRGGNATKST-------------------------ENTIA----SGGEIYAIASNVSISGCVFEENFAEDYGVGIYANLST 393
            + P  P+FFVDGG+L+L+ + +RGG  + ST                         E  IA    SGG ++AI SNV+++GC FEEN+A+ +G GI+AN ST
Sbjct:   41 TAPTGPLFFVDGGQLFLDSLAVRGGYTSNSTGSFTYAASTDAAADGTNSTTTSGVNETAIATVVISGGGVHAIDSNVTVTGCEFEENYADYWGGGIFANGST 142
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BLAST of mRNA_H-elongata_contig169478.4310.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 6.520e-10
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 1 
Query:  175 SVPFRPIFFVDGGELYLEGVTIRGGNATKST-------------------------ENTIA----SGGEIYAIASNVSISGCVFEENFAEDYGVGIYANLST 393
            + P  P+FFVDGG+L+L+ + +RGG  + ST                         E  IA    SGG ++AI SNV+++GC FE N+A+ +G GI+AN ST
Sbjct:  188 TTPTGPLFFVDGGQLFLDSLAVRGGYTSNSTGSFTYTASTDAADDAANSTNTSGVNETAIATVVISGGGVHAIDSNVTVTGCEFEANYADFWGGGIFANGST 289
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169478.4310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K4A5_9PHAE2.050e-1345.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G167_ECTSI4.290e-1140.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0B0_ECTSI1.010e-1039.22Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JRA9_9PHAE6.520e-1038.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169478contigH-elongata_contig169478:705..1097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.7221112-CDS-H-elongata_contig169478:704..10971622929988.7221112-CDS-H-elongata_contig169478:704..1097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169478 705..1097 +
1691679236.4042032-CDS-H-elongata_contig169478:704..10971691679236.4042032-CDS-H-elongata_contig169478:704..1097Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169478 705..1097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169478.4310.1prot_H-elongata_contig169478.4310.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169478 705..1097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169478.4310.1

>prot_H-elongata_contig169478.4310.1 ID=prot_H-elongata_contig169478.4310.1|Name=mRNA_H-elongata_contig169478.4310.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
ASPVESGSNAGSSASSSSNNSNTNSSTSDVDLDLKLEKLSSDLNLPEELT
SVAVGVNGSVPFRPIFFVDGGELYLEGVTIRGGNATKSTENTIASGGEIY
AIASNVSISGCVFEENFAEDYGVGIYANLST
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mRNA from alignment at H-elongata_contig169478:705..1097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169478.4310.1 ID=mRNA_H-elongata_contig169478.4310.1|Name=mRNA_H-elongata_contig169478.4310.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig169478:705..1097+ (Himanthalia elongata Himel1 dioecious)
GCCAGTCCCGTAGAAAGTGGCAGCAATGCCGGGTCTAGTGCTAGCAGCAG
CAGCAATAACAGCAACACCAATAGCAGCACCAGTGATGTCGACTTGGATT
TGAAATTAGAGAAGCTATCAAGCGACCTCAACCTCCCCGAGGAGCTGACG
TCTGTGGCCGTTGGGGTGAACGGGAGCGTCCCGTTCCGGCCGATCTTTTT
CGTCGACGGTGGAGAGCTCTACCTCGAGGGCGTCACCATCCGGGGTGGAA
ACGCGACCAAATCCACGGAAAACACGATCGCGTCCGGCGGCGAGATCTAC
GCCATAGCTTCGAACGTCTCGATTTCTGGCTGCGTGTTCGAGGAAAACTT
CGCGGAGGACTACGGGGTTGGAATCTACGCCAATCTTTCGACA
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Coding sequence (CDS) from alignment at H-elongata_contig169478:705..1097+

>mRNA_H-elongata_contig169478.4310.1 ID=mRNA_H-elongata_contig169478.4310.1|Name=mRNA_H-elongata_contig169478.4310.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig169478:705..1097+ (Himanthalia elongata Himel1 dioecious)
GCCAGTCCCGTAGAAAGTGGCAGCAATGCCGGGTCTAGTGCTAGCAGCAG
CAGCAATAACAGCAACACCAATAGCAGCACCAGTGATGTCGACTTGGATT
TGAAATTAGAGAAGCTATCAAGCGACCTCAACCTCCCCGAGGAGCTGACG
TCTGTGGCCGTTGGGGTGAACGGGAGCGTCCCGTTCCGGCCGATCTTTTT
CGTCGACGGTGGAGAGCTCTACCTCGAGGGCGTCACCATCCGGGGTGGAA
ACGCGACCAAATCCACGGAAAACACGATCGCGTCCGGCGGCGAGATCTAC
GCCATAGCTTCGAACGTCTCGATTTCTGGCTGCGTGTTCGAGGAAAACTT
CGCGGAGGACTACGGGGTTGGAATCTACGCCAATCTTTCGACAGCCAGTC
CCGTAGAAAGTGGCAGCAATGCCGGGTCTAGTGCTAGCAGCAGCAGCAAT
AACAGCAACACCAATAGCAGCACCAGTGATGTCGACTTGGATTTGAAATT
AGAGAAGCTATCAAGCGACCTCAACCTCCCCGAGGAGCTGACGTCTGTGG
CCGTTGGGGTGAACGGGAGCGTCCCGTTCCGGCCGATCTTTTTCGTCGAC
GGTGGAGAGCTCTACCTCGAGGGCGTCACCATCCGGGGTGGAAACGCGAC
CAAATCCACGGAAAACACGATCGCGTCCGGCGGCGAGATCTACGCCATAG
CTTCGAACGTCTCGATTTCTGGCTGCGTGTTCGAGGAAAACTTCGCGGAG
GACTACGGGGTTGGAATCTACGCCAATCTTTCGACA
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