mRNA_H-elongata_contig169310.4304.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig169310.4304.1
Unique NamemRNA_H-elongata_contig169310.4304.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig169310.4304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig169310contigH-elongata_contig169310:492..995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size504
Cds size339
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.1947193-CDS-H-elongata_contig169310:491..8301622929988.1947193-CDS-H-elongata_contig169310:491..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169310 492..830 +
1691679236.2191086-CDS-H-elongata_contig169310:491..8301691679236.2191086-CDS-H-elongata_contig169310:491..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig169310 492..830 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929988.212356-UTR-H-elongata_contig169310:830..9951622929988.212356-UTR-H-elongata_contig169310:830..995Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig169310 831..995 +
1691679236.2273579-UTR-H-elongata_contig169310:830..9951691679236.2273579-UTR-H-elongata_contig169310:830..995Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig169310 831..995 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig169310.4304.1prot_H-elongata_contig169310.4304.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig169310 492..830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig169310.4304.1

>prot_H-elongata_contig169310.4304.1 ID=prot_H-elongata_contig169310.4304.1|Name=mRNA_H-elongata_contig169310.4304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
SSHRWPVSPPRYRCSENGRVLKRSTTREDKEQPRDRSTRVGTKSHLEILR
KNTVHEDGATDSHCSQDADERNANKEPSLHTTYTLPTASNTGHDAECKIL
LRRWKPDLSTYF*
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mRNA from alignment at H-elongata_contig169310:492..995+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig169310.4304.1 ID=mRNA_H-elongata_contig169310.4304.1|Name=mRNA_H-elongata_contig169310.4304.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=504bp|location=Sequence derived from alignment at H-elongata_contig169310:492..995+ (Himanthalia elongata Himel1 dioecious)
TCATCTCATCGCTGGCCAGTGTCACCGCCTCGTTACAGATGCTCTGAAAA
TGGGCGTGTACTGAAAAGATCTACCACTCGGGAGGACAAGGAACAGCCGA
GGGATCGAAGCACGCGAGTAGGAACAAAGTCACATTTAGAGATACTCAGG
AAGAATACTGTGCATGAGGATGGGGCCACAGACAGTCATTGCTCGCAGGA
TGCAGACGAACGAAACGCAAACAAGGAGCCATCCTTACATACTACGTATA
CCCTCCCAACTGCCTCAAACACGGGCCATGATGCTGAGTGTAAGATCCTA
CTTCGACGTTGGAAGCCTGACTTGTCTACCTACTTTTAATCGACAATGAA
AAACGCAATTTATCAAGGTTTCACTTCCCTCCACGATACTCCCTGGGGTA
ATCGACGCTTGCATATTTCTAGAGAGCCACGTGATGTCGTTCCTCATTGC
CCTGTACGTGAAAGACTCTATCAAGGCATTTTTAAGCAAGTCGTGTTCTG
ACTC
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Coding sequence (CDS) from alignment at H-elongata_contig169310:492..995+

>mRNA_H-elongata_contig169310.4304.1 ID=mRNA_H-elongata_contig169310.4304.1|Name=mRNA_H-elongata_contig169310.4304.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig169310:492..995+ (Himanthalia elongata Himel1 dioecious)
TCATCTCATCGCTGGCCAGTGTCACCGCCTCGTTACAGATGCTCTGAAAA
TGGGCGTGTACTGAAAAGATCTACCACTCGGGAGGACAAGGAACAGCCGA
GGGATCGAAGCACGCGAGTAGGAACAAAGTCACATTTAGAGATACTCAGG
AAGAATACTGTGCATGAGGATGGGGCCACAGACAGTCATTGCTCGCAGGA
TGCAGACGAACGAAACGCAAACAAGGAGCCATCCTTACATACTACGTATA
CCCTCCCAACTGCCTCAAACACGGGCCATGATGCTGAGTGTAAGATCCTA
CTTCGACGTTGGAAGCCTGACTTGTCTACCTACTTTTAATCATCTCATCG
CTGGCCAGTGTCACCGCCTCGTTACAGATGCTCTGAAAATGGGCGTGTAC
TGAAAAGATCTACCACTCGGGAGGACAAGGAACAGCCGAGGGATCGAAGC
ACGCGAGTAGGAACAAAGTCACATTTAGAGATACTCAGGAAGAATACTGT
GCATGAGGATGGGGCCACAGACAGTCATTGCTCGCAGGATGCAGACGAAC
GAAACGCAAACAAGGAGCCATCCTTACATACTACGTATACCCTCCCAACT
GCCTCAAACACGGGCCATGATGCTGAGTGTAAGATCCTACTTCGACGTTG
GAAGCCTGACTTGTCTACCTACTTTTAA
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