mRNA_H-elongata_contig16913.4296.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16913.4296.1
Unique NamemRNA_H-elongata_contig16913.4296.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16913.4296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16913contigH-elongata_contig16913:3106..3426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue1.2e-09
Seed eggNOG ortholog2880.D7FSL4
EggNOG free text desc.DNA-binding transcription factor activity
EggNOG OGsKOG0774@1,KOG0774@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929987.567229-CDS-H-elongata_contig16913:3105..34261622929987.567229-CDS-H-elongata_contig16913:3105..3426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16913 3106..3426 +
1691679235.9155588-CDS-H-elongata_contig16913:3105..34261691679235.9155588-CDS-H-elongata_contig16913:3105..3426Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16913 3106..3426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16913.4296.1prot_H-elongata_contig16913.4296.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16913 3106..3426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16913.4296.1

>prot_H-elongata_contig16913.4296.1 ID=prot_H-elongata_contig16913.4296.1|Name=mRNA_H-elongata_contig16913.4296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
KRFGLIGGAVAHQVWVKLLEKTNSTIERIRTLGRDGIPNQQQEIISEERK
TSHRMIAEILDNATSSLREILGSGYSHGTASSCSGSSGFDSSNRFGSSTC
SRNHYST
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mRNA from alignment at H-elongata_contig16913:3106..3426+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16913.4296.1 ID=mRNA_H-elongata_contig16913.4296.1|Name=mRNA_H-elongata_contig16913.4296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=321bp|location=Sequence derived from alignment at H-elongata_contig16913:3106..3426+ (Himanthalia elongata Himel1 dioecious)
AAGCGTTTCGGACTCATCGGGGGCGCCGTAGCGCATCAGGTCTGGGTTAA
GTTGTTGGAGAAGACCAATTCTACCATCGAGCGCATTCGGACATTGGGAA
GAGACGGGATTCCAAACCAACAGCAGGAAATCATCAGCGAGGAGCGAAAA
ACCTCTCATCGCATGATCGCGGAGATTCTCGATAATGCGACGAGTTCATT
GAGGGAGATTTTAGGCAGCGGTTATAGTCATGGCACAGCCAGCAGCTGTA
GTGGAAGTAGTGGCTTTGACAGCAGCAATCGATTCGGCAGCAGCACCTGC
AGCCGCAACCACTACAGCACC
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Coding sequence (CDS) from alignment at H-elongata_contig16913:3106..3426+

>mRNA_H-elongata_contig16913.4296.1 ID=mRNA_H-elongata_contig16913.4296.1|Name=mRNA_H-elongata_contig16913.4296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig16913:3106..3426+ (Himanthalia elongata Himel1 dioecious)
AAGCGTTTCGGACTCATCGGGGGCGCCGTAGCGCATCAGGTCTGGGTTAA
GTTGTTGGAGAAGACCAATTCTACCATCGAGCGCATTCGGACATTGGGAA
GAGACGGGATTCCAAACCAACAGCAGGAAATCATCAGCGAGGAGCGAAAA
ACCTCTCATCGCATGATCGCGGAGATTCTCGATAATGCGACGAGTTCATT
GAGGGAGATTTTAGGCAGCGGTTATAGTCATGGCACAGCCAGCAGCTGTA
GTGGAAGTAGTGGCTTTGACAGCAGCAATCGATTCGGCAGCAGCACCTGC
AGCCGCAACCACTACAGCACCAAGCGTTTCGGACTCATCGGGGGCGCCGT
AGCGCATCAGGTCTGGGTTAAGTTGTTGGAGAAGACCAATTCTACCATCG
AGCGCATTCGGACATTGGGAAGAGACGGGATTCCAAACCAACAGCAGGAA
ATCATCAGCGAGGAGCGAAAAACCTCTCATCGCATGATCGCGGAGATTCT
CGATAATGCGACGAGTTCATTGAGGGAGATTTTAGGCAGCGGTTATAGTC
ATGGCACAGCCAGCAGCTGTAGTGGAAGTAGTGGCTTTGACAGCAGCAAT
CGATTCGGCAGCAGCACCTGCAGCCGCAACCACTACAGCACC
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