mRNA_H-elongata_contig16904.4293.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A6H5J803_9PHAE (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J803_9PHAE) HSP 1 Score: 423 bits (1088), Expect = 1.210e-138 Identity = 240/335 (71.64%), Postives = 267/335 (79.70%), Query Frame = 1
Query: 1 RRLSAAVLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGFARQALEADLNAGIGDEVSPATQCLPEIYNVAAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAAAVLEKHLREKNVAAWAARGVASWPEVSSGGGSGSGEDAEGAAATAKVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEA---------------GKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEISAGSTACSCAEDAFFVAQRCAKRGLATGHAGAASAVVNHAANILGENLLQALVRK 960
R LS+AVLERFETAVLDMDEPGIAAACPLLAPLGLAT+GQELYLGFAR+ALEA+L AG GD PATQ LP IYN +AAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAA VLEKHLRE +VA+WAA GV + AAA A+VLG+ADALL+ELA+LTQHTESYDRFV+FLV EVE AHPS+EE + A G + S +PAPILEP+MPARTRLQEAGAEVA+YYSQIEGQL+ ASV+KAIA+DE++ G+ A SCAEDAFFVAQRCAKR LATGHAGAASAVVNH N LG +LL+ALVRK
Sbjct: 220 RGLSSAVLERFETAVLDMDEPGIAAACPLLAPLGLATRGQELYLGFARRALEAELEAGAGDGSLPATQSLPAIYNTSAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAATVLEKHLREHSVASWAADGV----------------EGAAAAAAAEVLGKADALLEELAVLTQHTESYDRFVKFLVMEVEGAHPSQEEFEATRAPTNGEDGESKTGGGGGAAAERPSVLPAPILEPVMPARTRLQEAGAEVAVYYSQIEGQLLEASVSKAIAVDEVAPGAAASSCAEDAFFVAQRCAKRALATGHAGAASAVVNHVGNTLGVDLLEALVRK 538
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A4D9D1B9_9STRA (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1B9_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.270e-37 Identity = 127/370 (34.32%), Postives = 179/370 (48.38%), Query Frame = 1
Query: 4 RLSAAVLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGFARQALEADLNAGIGDEVS-PATQCLPEIYNVAAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAAAVLEKHLREKNVA------AWAARGV-----ASWPEVSSGGGSGSGEDAEGAAAT-AKVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDE---------ISAGST----------------------------ACSCAEDAFFVAQRCAKRGLATGHAGAASAVVNHAANILGENLLQALVRKV 963
RL VL R AV + + CPLL PLGLA +G +Y FA + L+ L+ + + PA Q LP+IYN AA FL+R +P+ + G DV+L+R+V REC D A V+ + L +K VA A A+RG ++ GG G A G A +G+ D L+D LA++ QHTESYDRF+R + EV E G+ G P++P T L A AEVA ++ +E +M ASVAKA+ +DE + AG++ S +D+F+V +RCA+R L TGHAG ASA++N+ L + L+ L KV
Sbjct: 236 RLKETVLRRVHLAVSRSELDDVFKFCPLLGPLGLAKEGASIYESFAERLLKEGLDPLVAETSKLPAVQLLPKIYNTAAGFLQRHLPLVSHGFKQVDADVSLIRLVQRECEDAAIPVIRRFLEDKGVAEKCRAVAEASRGDDGLDGGAFHARKEGGHRRRGAQASGGEGEEALPIGEMDGLMDALALVIQHTESYDRFLRHVAAEV------------LETGRDLGA----------PVLPVVTDLNGAVAEVAGPFALLEDYVMRASVAKALQIDELPALAPLSLVQAGTSLVASGAGIASIGEGDDLLLSTGRGDSPLTSSAVDDSFYVLRRCARRALVTGHAGTASAIINYINGALSDELMSVLSAKV 583
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A836CCD6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCD6_9STRA) HSP 1 Score: 104 bits (260), Expect = 3.610e-22 Identity = 63/124 (50.81%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 22 LERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGFARQAL-----EADLNAGIGDEVSPATQCLPEIYNVAAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAAAVLEKHLREKNV 378
L RFE AV GI A CPLL PLGLA + ++ FAR L E D A G +PAT L +YN AAFL++QVP+AA+GLA GDV L+R+V ECG RAAAV+++HLRE+ V
Sbjct: 197 LSRFEAAVRADSRDGIVAGCPLLGPLGLAAAAKGPFMEFARGLLGSTLAELDAAAPAG---APATHALSALYNSCAAFLQQQVPLAASGLAASCGDVDLLRMVHDECGARAAAVMQRHLRERKV 317
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A836C9B0_9STRA (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B0_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.040e-20 Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 478 KVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEISA--GSTACSCAEDAFFVAQ 849
K L + DA LDELA++ QHTESYDRF+R LVE VE++HP + + R KS + PA I P++P RT+L+EA EV+ Y+++E L S+ KA+A+DE+ G SC EDAFFVAQ
Sbjct: 4 KQLAELDAALDELALMLQHTESYDRFLRHLVEGVEASHPKAGDDLH------REKSPSTPAIIDGPVLPERTKLEEAAGEVSALYAELEAGLFRCSLRKALAIDEVHGHGGLVTSSCVEDAFFVAQ 123
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: B7FZH3_PHATC (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZH3_PHATC) HSP 1 Score: 76.3 bits (186), Expect = 1.350e-11 Identity = 95/354 (26.84%), Postives = 155/354 (43.79%), Query Frame = 1
Query: 19 VLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGFARQALEADLNAGIGDEVS------------PATQCLPEIYNVAAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAAAVLEKHLREKNVAA---WAARGVASWPEVSSGGGSGSGEDAEGAAATAKVLG---------QADALLDELAILTQHTESYDRFVRFLVEEVESAHPSE-EEAISAEAGKVRGKSSAVPAPILEPI--MPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDE----------ISAGST--------------ACSCAEDAFFVAQRCAKRGLATGHAGAASAVVNHAANIL 927
+L+ +E AV D + P+L+ L L ++ LYL F + L++ + + S P + ++YN A LR +P+ ++ L GDVA+V++V + + +LE+ + +++A+ A R A E +G + DA AAA A G DA + E+A QH ESY RFV+ ++V+ A E++ S E ++ P ++E I +P RT L A AEV Y+ IE L+ AS+ +A E +++G T + E + +R +R ATGH G ASA+ N + L
Sbjct: 214 LLQNYEHAVQQGDLQALGKYTPILSSLQLESEAVRLYLQFLKSLLQSSIRQALDPTHSQSQNSNGPSNTVPPYVPMAKVYNAAVHVLRHHLPMVSSYLYKAQGDVAVVQLVHVQVEETVLPMLERFQKSRDLASVSTQAQRIAADLEERYTGR---TAVDAHDAAAEADDAGFGALVGSLTDVDATMQEVATCLQHVESYLRFVQHTCDQVQKARTMRHEQSFSRE-----WENDGTPVDLMETIEILPTRTNLHLALAEVGGQYASIERCLLMASMQRAFHASEDDPRYYRPLGMASGGTNHGNGNSSFPSKALQTALVETCLYATRRGTQRAFATGHTGTASAMTNFGVDCL 559
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A7S3CAS4_9CHLO (Conserved oligomeric Golgi complex subunit 4 n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CAS4_9CHLO) HSP 1 Score: 72.4 bits (176), Expect = 2.370e-10 Identity = 86/332 (25.90%), Postives = 142/332 (42.77%), Query Frame = 1
Query: 1 RRLSAAVLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELY----LGFARQALEADLNAGIGDEVSPAT----------QCLPEIY-NVAAAFLRRQVPVAAAGLAPCLGDVALVRVVTRECGDRAAAVLEKHLREKNVAAWAARGVASWPEVSSGGGSGSGEDAEGAAATAKVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEISAGSTACSCAEDAFFVAQRCAKRGLATGHAGAASAVVNHAANILGENLLQAL 951
R L VLE+FE A + D + +L P+GL G + +G AD + + + P +CL ++ +VA A + +A A A G V ++ + EC RA +L KH+ + +A A +G G +G A G +A + + +DE+ +L E Y+ LV+ ++ A S A ++ + P P ++E A YY+ +E M ++A A+ +DE GS S EDAFF+ Q+C++RG+ATG+ +V+++ N L L AL
Sbjct: 194 RSLREIVLEKFERAARERDHEQVKRFAAILGPIGLVESGLAAFTKYLVGLVSSRATADYDELLSEISVPRGASSEGRVDFHKCLTNLFRDVAEAVEANRDLIAEAYGAD--GFVGVLAALHGECEQRATQILRKHIEFRQLARLA---------EDAGAGDNNGAGAGGEGGSASRVKDFERTVDEVVMLCVRCEEYNSL---LVDVLDQARASGSSAAESKIASL-------------PSSPLNCCVRELNA----YYTSLEDAYMARTIAMAVEMDECVEGSMTSSLVEDAFFLLQKCSRRGMATGNVQCVCSVLSNVNNHLCNAYLAAL 494
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A7S2UY20_9STRA (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY20_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 5.460e-7 Identity = 36/100 (36.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 496 DALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEI 795
DALLDE+A++ QHTESYDRF+R V++VE+ ++P T + + AE++ YYSQ+E +LM SV KA+ +D++
Sbjct: 2 DALLDEVALVIQHTESYDRFLRHAVDQVEALPLXXXXXXXXXXXXXXXXXQ---------VIPRATEMNASVAEISAYYSQLEHRLMVLSVRKALYIDQV 92
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: I2CPS3_NANGC (Conserved oligomeric Golgi complex subunit 4 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPS3_NANGC) HSP 1 Score: 57.8 bits (138), Expect = 9.390e-7 Identity = 40/102 (39.22%), Postives = 56/102 (54.90%), Query Frame = 1
Query: 496 DALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEISA 801
D L+D LA++ QHTESYDRF+R + EV E G+ G P++PA T L A AEVA ++ +E +M AS+AKA+ +DE+ A
Sbjct: 2 DGLMDALALVIQHTESYDRFLRHVAAEV------------LETGRDLGA----------PVLPAVTDLNGAVAEVAGPFALLEDYVMRASIAKALQIDELPA 81
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A5B8MRN3_9CHLO (Conserved oligomeric Golgi complex subunit 4 n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MRN3_9CHLO) HSP 1 Score: 59.7 bits (143), Expect = 3.430e-6 Identity = 82/331 (24.77%), Postives = 135/331 (40.79%), Query Frame = 1
Query: 1 RRLSAAVLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGF------ARQALEAD-LNAGIGDEVSPATQCLPEIYNVAAAFLRRQVPVAAAG----LAPCLGDVALVRVVT---RECGDRAAAVLEKHLREKNVAAWAARGVASWPEVSSGGGSGSGEDAEGAAATAKVLGQADALLDELAILTQHTESYDRFVRFLVEEVESAHPSEEEAISAEAGKVRGKSSAVPAPILEPIMPARTRLQEAGAEVAMYYSQIEGQLMNASVAKAIALDEISAGSTACSCAEDAFFVAQRCAKRGLATGHAGAASAVVNHAANILGENLLQAL 951
+ L VLE+FE A + D + +L P+GL G + + + +R E D L A I + ++ + +N A L R + A + G V VV +E RA +L K + + +A R + S EV S GG + + +DE+ +L +E Y+ ++ ++ +A E S+ + G P ++E A YY+ +E M ++ AI +DE G+ S EDAFF+ Q+C +RG+ATG+ +V+N+ N L L AL
Sbjct: 222 KNLREVVLEKFEKAAKERDHDQVKRFASILGPIGLVESGLQAFTKYLIGLISSRATSEYDNLLAEISIPKNLESERKAD-FNAALTGLYRDIAEAIEANTQLITEAYGQEGFVDVVLSLHQEAETRAVQILRKFVEYRQLA----RAIESKGEVGSSGGDN--------------VTSFERTIDEVVMLCMRSEEYNNCIKMVLS---TAAEQGVEKASSTINSLGGS-------------PLNCVVRELNA----YYTGLEDNYMERTIQMAIQMDECVDGALTSSLVEDAFFILQKCGRRGMATGNVQCVCSVLNNINNHLCNAFLSAL 513
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Match: A0A7S2V6Z6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6Z6_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 6.370e-6 Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 1
Query: 829 DAFFVAQRCAKRGLATGHAGAASAVVNHAANILGENLLQALVRKV 963
D F+VAQRCAKR +ATGH G+ SAV+NH N L +LLQ L K+
Sbjct: 2 DVFYVAQRCAKRAMATGHGGSGSAVINHVNNCLASDLLQPLFTKL 46 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16904.4293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16904.4293.1 >prot_H-elongata_contig16904.4293.1 ID=prot_H-elongata_contig16904.4293.1|Name=mRNA_H-elongata_contig16904.4293.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=322bp RRLSAAVLERFETAVLDMDEPGIAAACPLLAPLGLATQGQELYLGFARQAback to top mRNA from alignment at H-elongata_contig16904:4353..6788- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16904.4293.1 ID=mRNA_H-elongata_contig16904.4293.1|Name=mRNA_H-elongata_contig16904.4293.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2436bp|location=Sequence derived from alignment at H-elongata_contig16904:4353..6788- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16904:4353..6788- >mRNA_H-elongata_contig16904.4293.1 ID=mRNA_H-elongata_contig16904.4293.1|Name=mRNA_H-elongata_contig16904.4293.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1932bp|location=Sequence derived from alignment at H-elongata_contig16904:4353..6788- (Himanthalia elongata Himel1 dioecious)back to top |