mRNA_H-elongata_contig168761.4280.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168761.4280.1
Unique NamemRNA_H-elongata_contig168761.4280.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168761.4280.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.860e-36
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:    1 QPDRPLVTGEVVPEHALAIGTGFLLGALASASAVHPAALQATIVASVGLTSAYTPVLKPIPVVKNLVVAGVVGAAIASGGLASGAGIAATLSPSLLTFFTIG 306
            +P+RPLVTGEVVP HAL IG  FLL A+ASAS V+PAALQATIVASV LT AYTP+LKPIP+VKN VVA V+ AAI +GGLA+GAG+A+TL+PS+LTFF IG
Sbjct:  201 EPERPLVTGEVVPVHALGIGVAFLLAAVASASFVNPAALQATIVASVALTLAYTPLLKPIPLVKNFVVAMVIAAAIGAGGLAAGAGVASTLTPSVLTFFVIG 302
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BLAST of mRNA_H-elongata_contig168761.4280.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.990e-30
Identity = 68/102 (66.67%), Postives = 79/102 (77.45%), Query Frame = 1 
Query:    1 QPDRPLVTGEVVPEHALAIGTGFLLGALASASAVHPAALQATIVASVGLTSAYTPVLKPIPVVKNLVVAGVVGAAIASGGLASGAGIAATLSPSLLTFFTIG 306
            +P+RPLVTGEVVP HAL IG  FLL A+ASAS V+PAALQATIVASV LT AYTP+LKPIP+VKN VVA V+            AG+A+TL+PS+LTFF IG
Sbjct:   83 EPERPLVTGEVVPVHALGIGVAFLLAAVASASFVNPAALQATIVASVALTLAYTPLLKPIPLVKNFVVAMVIXXXXXXXXXXXXAGVASTLTPSVLTFFVIG 184
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BLAST of mRNA_H-elongata_contig168761.4280.1 vs. uniprot
Match: A0A7S1X008_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X008_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 9.070e-7
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:    4 PDRPLVTGEVVPEHALAIGTGFLLGALASASAVHPAALQATIVASVGLTSAYTPVLKPIPVVKNLVVAGVVGAAIASGGLASGA 255
            PD+PLV+G++ P   L          LA+A  ++  +L+  I  S GLT  YTP+LK + VVKN+VVA +   +  +G LA+GA
Sbjct:   30 PDKPLVSGKIQPNVVLLTSLYMYSAILAAACLMNSMSLRTVIATSAGLTILYTPILKSMTVVKNVVVAAIXXXSPLAGALAAGA 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168761.4280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LBF2_9PHAE1.860e-3674.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD89_ECTSI2.990e-3066.67Prenyltransferase, UbiA family, Putative 4-hydroxy... [more]
A0A7S1X008_9CHLO9.070e-740.48Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168761contigH-elongata_contig168761:381..1281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.9
Seed ortholog evalue2.9e-24
Seed eggNOG ortholog2880.D8LD89
EggNOG free text desc.UbiA prenyltransferase family
EggNOG OGs2CYY1@1,2S75T@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929985.3765056-CDS-H-elongata_contig168761:380..5001622929985.3765056-CDS-H-elongata_contig168761:380..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168761 381..500 +
1691679235.2343254-CDS-H-elongata_contig168761:380..5001691679235.2343254-CDS-H-elongata_contig168761:380..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168761 381..500 +
1622929985.421296-CDS-H-elongata_contig168761:1095..12811622929985.421296-CDS-H-elongata_contig168761:1095..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168761 1096..1281 +
1691679235.2459805-CDS-H-elongata_contig168761:1095..12811691679235.2459805-CDS-H-elongata_contig168761:1095..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168761 1096..1281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168761.4280.1prot_H-elongata_contig168761.4280.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168761 381..1281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168761.4280.1

>prot_H-elongata_contig168761.4280.1 ID=prot_H-elongata_contig168761.4280.1|Name=mRNA_H-elongata_contig168761.4280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
QPDRPLVTGEVVPEHALAIGTGFLLGALASASAVHPAALQATIVASVGLT
SAYTPVLKPIPVVKNLVVAGVVGAAIASGGLASGAGIAATLSPSLLTFFT
IG
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mRNA from alignment at H-elongata_contig168761:381..1281+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168761.4280.1 ID=mRNA_H-elongata_contig168761.4280.1|Name=mRNA_H-elongata_contig168761.4280.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=901bp|location=Sequence derived from alignment at H-elongata_contig168761:381..1281+ (Himanthalia elongata Himel1 dioecious)
CAGCCTGACCGACCGCTCGTGACTGGGGAGGTCGTGCCGGAGCACGCTCT
GGCCATCGGGACGGGATTTTTACTGGGGGCCTTAGCGAGCGCGTCGGCGG
TGCATCCGGCAGCGTTGCAGGTGCGGTGGAGGCGTTACTGCGACGGGGAA
GGGTGGCGCCGCGATGAGCACATCGTTTTTCTGGAGTTGGGCTTGTCCTT
CGTCTAACCGGAGCGGCGGTGAAGTGGCGCCGATCTTATTTTCATGGGTG
CTTGGTTGTTTCGATGTCCCGCCGAGCGACAGATTTTTCACGGCTACATA
TTTGCTGTCCTTGTTTGTCACGGATACATACGGTGAAACACGTCAGTACA
AAGCGGCGGAATCACTTGGCAAATAGGTGGTATCTCCTCCCTGGCCCCCG
ATATTTTATCGATCTTCTGGTGACGTTGCGTGACGCGAGACACGACCTCG
CGCGTTCGCCAAGCCAAGCCGAGCCGAGCCTTGCTGCGGCTACGACTGGA
ACTGTGGTGGGAAGCGGCGAATCCACCTCCCCCATCGCGACGCAGAACAC
AGTGACCACCAAGCGGCGGCAGCAACCTGGCGGAGCGATGGGCGCCTTTG
TGTGTATGTGTGTGTGTGTGCCTACGCAATCATGTTTCTCTGTGCGTGCA
TCCGGGATTGTCACGTGATGAAAAACGCAGGCGCTTTCATTTGCCGAACT
GTATCCGGTCGTCAGGCGACCATCGTGGCCTCGGTGGGGCTGACGTCCGC
GTACACGCCCGTCCTGAAACCGATTCCGGTGGTGAAGAACCTGGTCGTGG
CCGGAGTCGTCGGGGCTGCCATCGCCTCTGGGGGGCTCGCTTCCGGAGCC
GGGATCGCTGCGACGCTGTCCCCGTCTCTGCTCACCTTTTTCACCATCGG
T
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Coding sequence (CDS) from alignment at H-elongata_contig168761:381..1281+

>mRNA_H-elongata_contig168761.4280.1 ID=mRNA_H-elongata_contig168761.4280.1|Name=mRNA_H-elongata_contig168761.4280.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig168761:381..1281+ (Himanthalia elongata Himel1 dioecious)
CAGCCTGACCGACCGCTCGTGACTGGGGAGGTCGTGCCGGAGCACGCTCT
GGCCATCGGGACGGGATTTTTACTGGGGGCCTTAGCGAGCGCGTCGGCGG
TGCATCCGGCAGCGTTGCAGCAGCCTGACCGACCGCTCGTGACTGGGGAG
GTCGTGCCGGAGCACGCTCTGGCCATCGGGACGGGATTTTTACTGGGGGC
CTTAGCGAGCGCGTCGGCGGTGCATCCGGCAGCGTTGCAGGCGACCATCG
TGGCCTCGGTGGGGCTGACGTCCGCGTACACGCCCGTCCTGAAACCGATT
CCGGTGGTGAAGAACCTGGTCGTGGCCGGAGTCGTCGGGGCTGCCATCGC
CTCTGGGGGGCTCGCTTCCGGAGCCGGGATCGCTGCGACGCTGTCCCCGT
CTCTGCTCACCTTTTTCACCATCGGTGCGACCATCGTGGCCTCGGTGGGG
CTGACGTCCGCGTACACGCCCGTCCTGAAACCGATTCCGGTGGTGAAGAA
CCTGGTCGTGGCCGGAGTCGTCGGGGCTGCCATCGCCTCTGGGGGGCTCG
CTTCCGGAGCCGGGATCGCTGCGACGCTGTCCCCGTCTCTGCTCACCTTT
TTCACCATCGGT
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