mRNA_H-elongata_contig168483.4267.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168483.4267.1
Unique NamemRNA_H-elongata_contig168483.4267.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A6H5KAJ4_9PHAE (Brix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ4_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.530e-48
Identity = 93/125 (74.40%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:    1 GKVWVRKYQIVDKGDKK--GLN-----ASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVFS 354
            GKVWVR YQIVDKGD    GLN     A+T  G G    G E D LSLVEMGPRFVL+PIRVFAGS GGPTLY+N AYVSPN VRSA+KR+AGTKFEDRQEAKK+V+ KK EPAVPRGPLDDVFS
Sbjct:  315 GKVWVRNYQIVDKGDGSTTGLNRKIEAATTAAGGGGEGTGAE-DSLSLVEMGPRFVLNPIRVFAGSFGGPTLYNNAAYVSPNDVRSARKRKAGTKFEDRQEAKKVVRGKKAEPAVPRGPLDDVFS 438
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BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: D8LM67_ECTSI (Brix domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM67_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 3.170e-28
Identity = 68/118 (57.63%), Postives = 74/118 (62.71%), Query Frame = 1 
Query:    1 GKVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVFS 354
            GKVWVR YQIVDKGD      STTG                        L P        GGPTLY+N AYVSPN VRSA+KR+AGTKFEDRQEAKK+V+ KK EPAVPRGPLDD+FS
Sbjct:  235 GKVWVRNYQIVDKGD-----GSTTG------------------------LKPF-------GGPTLYNNAAYVSPNDVRSARKRKAGTKFEDRQEAKKVVRGKKAEPAVPRGPLDDLFS 316
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BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A7S2EY12_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EY12_TRICV)

HSP 1 Score: 103 bits (257), Expect = 3.200e-24
Identity = 58/119 (48.74%), Postives = 73/119 (61.34%), Query Frame = 1 
Query:    1 GKVWVRKYQIVDKGDKKGLNASTTGGRG--SSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 351
            GK+WVR YQI++       N  TT      + ++    D  +LVE+GPRFVLDPIR+F GS GG TLY N A+VSPN +R+A KR  G  +EDR  A+K  +E K    VP  PL DVF
Sbjct:  211 GKIWVRNYQILE-------NQPTTAKEAHFAKKSPGSTDGTNLVEIGPRFVLDPIRIFRGSFGGQTLYKNNAFVSPNEIRAADKREMGKAYEDRVRAQKRRREWKDNFVVPEDPLGDVF 322
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BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A835YV20_9STRA (Brix domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV20_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.080e-24
Identity = 57/116 (49.14%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:    4 KVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 351
            KVWVR YQI+D GD         G +      Q  +  SLVE+GPRFVL+PIR+F+GS GGPTLY N AYVSPN VR+ KKR  G K+ D+  A+   +EK       + P DD+F
Sbjct:  258 KVWVRNYQIIDAGD--------GGAKEKKLVHQGKEVTSLVEIGPRFVLEPIRLFSGSFGGPTLYQNPAYVSPNEVRANKKRAEGAKYHDKATARIQAREKIENLVRVQDPTDDIF 365
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BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A7S0Y7K0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7K0_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.700e-23
Identity = 55/116 (47.41%), Postives = 75/116 (64.66%), Query Frame = 1 
Query:    4 KVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 351
            K+WVR YQIV +     L A     +   R GQE D  SLVE+GPRFVL+PIR+F GS GG TL+ N  +VSPN +R+ +K+R G  +E R+E++K+ K ++ E  +P  PL  VF
Sbjct:  220 KIWVRNYQIVQQQPTNALEAH----QAKKRNGQE-DSTSLVEIGPRFVLNPIRIFRGSFGGQTLFQNPDFVSPNEIRAIEKKRKGRSYELRKESQKIRKSRQEEYVLPEDPLGSVF 330
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BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A1E7F9Z5_9STRA (Brix-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F9Z5_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.720e-23
Identity = 53/116 (45.69%), Postives = 76/116 (65.52%), Query Frame = 1 
Query:    4 KVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 351
            K+WVR YQI+++     L A T       ++GQE +  SLVE+GPRFVL+PIR+F GS GG TL+ N  +VSPN +R+ +K+R G  + DR++++K  K +  E  +P  PLD VF
Sbjct:  219 KIWVRNYQILEQQATNALEAHTL----KKKSGQE-ESTSLVEIGPRFVLNPIRIFRGSFGGQTLFQNPDFVSPNEIRAEEKKRQGLSYTDRKDSQKRRKTRHEELVLPEDPLDSVF 329
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BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A7S3L9L9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9L9_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.760e-22
Identity = 52/116 (44.83%), Postives = 74/116 (63.79%), Query Frame = 1 
Query:    4 KVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 351
            ++WVR YQI+++       A         ++G E+   SLVE+GPRFVL+PIR+F GS GG TLY N  YVSPNA R+ +++  G  +E+R+ ++ L KE+K +  VP  PLD VF
Sbjct:  236 RIWVRNYQILEQQPANAKEAHQV-----KKSGHELST-SLVEIGPRFVLNPIRIFRGSFGGQTLYRNPDYVSPNATRAMERKAKGMAYEERKNSQNLRKERKAQIVVPEDPLDSVF 345
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BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A448YY42_9STRA (Brix domain-containing protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448YY42_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.040e-22
Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 1 
Query:    4 KVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 351
            K+WVR YQIV++     L A     +    +GQE +  SLVE+GPRFVL+PIR+F GS GG TL+ N  +VSPN +R+ +K+R G  +E R+E++K+ K ++ +  +P  PL+ VF
Sbjct:  221 KIWVRNYQIVEEQPTNALEAH----QAKKLSGQE-ESTSLVEIGPRFVLNPIRIFRGSFGGQTLFQNPDFVSPNEIRAVEKKRKGRSYELRKESQKMRKSRQEDYVLPEDPLNSVF 331
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BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A6S9HVR3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HVR3_HETAK)

HSP 1 Score: 99.4 bits (246), Expect = 2.220e-22
Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 1 
Query:    1 GKVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLD--DVFS 354
            GKVWVR +QI+D+ D   +       R + ++G   +  SLVE+GPRFVL PIR+F GS GG TLY N A+VSPNA R+ K+R+ G K+ DRQ AK   KE+     +P+  L+   VFS
Sbjct:  251 GKVWVRNFQILDQADGGKVE------RAAEKSGNLDELTSLVEIGPRFVLTPIRIFDGSFGGATLYQNPAFVSPNAARAQKRRKKGLKYTDRQIAKTTSKERAQSNVMPKTGLEMQTVFS 364
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BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Match: A0A7S2EW86_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EW86_TRICV)

HSP 1 Score: 91.7 bits (226), Expect = 1.060e-21
Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = 1 
Query:  109 DPLSLVEMGPRFVLDPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVKEKKTEPAVPRGPLDDVF 351
            D  +LVE+GPRFVLDPIR+F GS GG TLY N A+VSPN +R+A KR  G  +EDR  A+K  +E K    VP  PL DVF
Sbjct:   24 DGTNLVEIGPRFVLDPIRIFRGSFGGQTLYKNDAFVSPNEIRAADKREMGKAYEDRVRAQKRRREWKDNFVVPEDPLGDVF 104
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168483.4267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAJ4_9PHAE2.530e-4874.40Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LM67_ECTSI3.170e-2857.63Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2EY12_TRICV3.200e-2448.74Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A835YV20_9STRA8.080e-2449.14Brix domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S0Y7K0_9STRA2.700e-2347.41Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A1E7F9Z5_9STRA3.720e-2345.69Brix-domain-containing protein n=1 Tax=Fragilariop... [more]
A0A7S3L9L9_9STRA1.760e-2244.83Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A448YY42_9STRA2.040e-2244.83Brix domain-containing protein n=2 Tax=Pseudo-nitz... [more]
A0A6S9HVR3_HETAK2.220e-2247.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2EW86_TRICV1.060e-2158.02Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168483contigH-elongata_contig168483:3..362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D8LM67
Preferred nameBRX1
KEGG koko:K14820
GOsGO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0008097,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042134,GO:0042254,GO:0042255,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG5154@1,KOG2971@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size360
Cds size360
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.633121-CDS-H-elongata_contig168483:2..3621622929984.633121-CDS-H-elongata_contig168483:2..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168483 3..362 +
1691679234.9446702-CDS-H-elongata_contig168483:2..3621691679234.9446702-CDS-H-elongata_contig168483:2..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168483 3..362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168483.4267.1prot_H-elongata_contig168483.4267.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168483 3..362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168483.4267.1

>prot_H-elongata_contig168483.4267.1 ID=prot_H-elongata_contig168483.4267.1|Name=mRNA_H-elongata_contig168483.4267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
GKVWVRKYQIVDKGDKKGLNASTTGGRGSSRAGQEIDPLSLVEMGPRFVL
DPIRVFAGSLGGPTLYHNGAYVSPNAVRSAKKRRAGTKFEDRQEAKKLVK
EKKTEPAVPRGPLDDVFSS*
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mRNA from alignment at H-elongata_contig168483:3..362+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168483.4267.1 ID=mRNA_H-elongata_contig168483.4267.1|Name=mRNA_H-elongata_contig168483.4267.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=360bp|location=Sequence derived from alignment at H-elongata_contig168483:3..362+ (Himanthalia elongata Himel1 dioecious)
GGCAAGGTGTGGGTGCGCAAGTACCAGATCGTGGACAAGGGGGACAAGAA
GGGCTTGAACGCGTCGACAACAGGGGGTCGGGGCAGCAGCCGCGCGGGGC
AGGAGATTGATCCGCTGAGTCTCGTTGAGATGGGGCCGAGGTTCGTGCTC
GACCCGATCCGCGTGTTCGCGGGGAGTCTGGGAGGCCCCACGCTGTACCA
CAATGGCGCTTACGTGTCGCCGAACGCGGTAAGATCGGCGAAGAAGCGTC
GAGCCGGGACAAAGTTCGAGGACAGGCAGGAGGCGAAGAAGCTTGTAAAG
GAGAAAAAGACGGAGCCCGCCGTGCCGCGGGGGCCGCTCGACGACGTCTT
TTCTTCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig168483:3..362+

>mRNA_H-elongata_contig168483.4267.1 ID=mRNA_H-elongata_contig168483.4267.1|Name=mRNA_H-elongata_contig168483.4267.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig168483:3..362+ (Himanthalia elongata Himel1 dioecious)
GGCAAGGTGTGGGTGCGCAAGTACCAGATCGTGGACAAGGGGGACAAGAA
GGGCTTGAACGCGTCGACAACAGGGGGTCGGGGCAGCAGCCGCGCGGGGC
AGGAGATTGATCCGCTGAGTCTCGTTGAGATGGGGCCGAGGTTCGTGCTC
GACCCGATCCGCGTGTTCGCGGGGAGTCTGGGAGGCCCCACGCTGTACCA
CAATGGCGCTTACGTGTCGCCGAACGCGGTAAGATCGGCGAAGAAGCGTC
GAGCCGGGACAAAGTTCGAGGACAGGCAGGAGGCGAAGAAGCTTGTAAAG
GAGAAAAAGACGGAGCCCGCCGTGCCGCGGGGGCCGCTCGACGACGTCTT
TTCTTCATAAGGCAAGGTGTGGGTGCGCAAGTACCAGATCGTGGACAAGG
GGGACAAGAAGGGCTTGAACGCGTCGACAACAGGGGGTCGGGGCAGCAGC
CGCGCGGGGCAGGAGATTGATCCGCTGAGTCTCGTTGAGATGGGGCCGAG
GTTCGTGCTCGACCCGATCCGCGTGTTCGCGGGGAGTCTGGGAGGCCCCA
CGCTGTACCACAATGGCGCTTACGTGTCGCCGAACGCGGTAAGATCGGCG
AAGAAGCGTCGAGCCGGGACAAAGTTCGAGGACAGGCAGGAGGCGAAGAA
GCTTGTAAAGGAGAAAAAGACGGAGCCCGCCGTGCCGCGGGGGCCGCTCG
ACGACGTCTTTTCTTCATAA
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