mRNA_H-elongata_contig168472.4266.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168472.4266.1
Unique NamemRNA_H-elongata_contig168472.4266.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Match: D7FNJ6_ECTSI (Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNJ6_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.260e-46
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 1 
Query:   16 EREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRERMKNSKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQ 315
            EREVLRLQQDIKQQVDQKMT+QKRTYFLQEQLKSIKKELGLEKDDKEAILNKFR+R K  K +TKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQ
Sbjct:  393 EREVLRLQQDIKQQVDQKMTNQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRDRRKKIKEITKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQ 492
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BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Match: A0A835YRA9_9STRA (Lon protease homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRA9_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.100e-33
Identity = 71/99 (71.72%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:   16 EREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRERMKNSKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLT 312
            ERE+ RLQ++I++QV++KMT Q+R YFL EQ+KSIKKELGLEKDDKEA+LNKFRERM+  + + K+A KA+EEELEKLSSLEKNS EFN T++YLDWLT
Sbjct:  232 ERELSRLQKEIQKQVEEKMTLQQRNYFLMEQMKSIKKELGLEKDDKEALLNKFRERMEACEDLGKDARKAMEEELEKLSSLEKNSQEFNTTRNYLDWLT 330
[Close]
BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Match: A0A7S2RZQ8_9STRA (Lon protease homolog n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZQ8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.300e-29
Identity = 63/99 (63.64%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:   16 EREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRERMKNSKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLT 312
            ERE+ ++QQ+I++QV+ KM+  +R YFL EQLKSIKKELG+EKDDKEA++ KFRERM+++  ++KEA    EEE+EKLS LEKNSPEFN T++YLDWL+
Sbjct:  297 EREMSKIQQEIQKQVEDKMSKTQREYFLHEQLKSIKKELGMEKDDKEALILKFRERMESAIDISKEARATFEEEVEKLSMLEKNSPEFNTTRNYLDWLS 395
[Close]
BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Match: A0A7S2B436_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B436_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.930e-28
Identity = 64/101 (63.37%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   16 EREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRERMK-NSKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQ 315
            ERE+ R+QQ+I+Q V++K++ Q+R YFL EQL+SIKKELG+E DDKEA+L KFR+R+K     M +EA K IE+EL+KL SLEKNS EFN T++YLDWLTQ
Sbjct:  213 EREMSRIQQEIQQNVEEKISKQQREYFLNEQLRSIKKELGVEMDDKEALLTKFRDRVKATGDSMPEEAAKTIEDELQKLGSLEKNSAEFNTTRNYLDWLTQ 313
[Close]
BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Match: A0A7S1BLT3_9STRA (Lon protease homolog n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BLT3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.760e-28
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:   16 EREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRERMKNSKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLTQ 315
            EREV RLQQ+I  QV+ KMT  +R YFL EQLKSIKKELG+EKDDK+A+L K+R+++     + +EA +AIE ELEKLS+LEKNS EFN T++YLDWLT+
Sbjct:  243 EREVSRLQQEISAQVEAKMTEAQRRYFLTEQLKSIKKELGMEKDDKDALLGKYRQKLAAFTEIPEEARRAIEAELEKLSALEKNSAEFNVTRTYLDWLTE 342
[Close]
BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Match: A0A7S2U8I2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U8I2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.110e-27
Identity = 61/101 (60.40%), Postives = 80/101 (79.21%), Query Frame = 1 
Query:   16 EREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRERMKN--SKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLT 312
            EREV +LQQ+I  +V++KMT+ +R YFL EQLKSIKKELG+EKDDKE ++ K+R+++K      + KE  + IE E+EKLS+LEKNS EFN T+SYLDWLT
Sbjct:  359 EREVSKLQQEISAKVEEKMTASQRKYFLMEQLKSIKKELGMEKDDKETLIEKYRKKLKEFADDAIPKEVNEVIESEMEKLSTLEKNSSEFNVTRSYLDWLT 459
[Close]
BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Match: A0A7S4HR69_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HR69_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.290e-27
Identity = 60/99 (60.61%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:   16 EREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRERMKNSKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLT 312
            EREV +LQQ+I  +V++KM+  +R YFL EQLKSIKKELG+E+DDKEA+++K+R+++K+   + +EA   I+ ELEKLS+LEKNS EFN T+SYLDWLT
Sbjct:  266 EREVSKLQQEISAKVEEKMSDAQRKYFLNEQLKSIKKELGMEQDDKEALIDKYRKKLKDYPQIPEEAMGVIDSELEKLSTLEKNSTEFNVTRSYLDWLT 364
[Close]
BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Match: A0A7S4HQU0_9STRA (Hypothetical protein (Fragment) n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQU0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.520e-26
Identity = 60/99 (60.61%), Postives = 82/99 (82.83%), Query Frame = 1 
Query:   16 EREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRERMKNSKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLT 312
            EREV +LQQ+I  +V++KM+  +R YFL EQLKSIKKELG+E+DDKEA+++K+R+++K+   + +EA   I+ ELEKLS+LEKNS EFN T+SYLDWLT
Sbjct:  385 EREVSKLQQEISAKVEEKMSDAQRKYFLNEQLKSIKKELGMEQDDKEALIDKYRKKLKDYPQIPEEAMGVIDSELEKLSTLEKNSTEFNVTRSYLDWLT 483
[Close]
BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Match: A0A7S3P6J3_9STRA (Lon protease homolog, mitochondrial n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6J3_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.930e-26
Identity = 59/99 (59.60%), Postives = 79/99 (79.80%), Query Frame = 1 
Query:   16 EREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRERMKNSKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLT 312
            EREV +LQ++I  +V++KMT  +R YFLQEQLKSIKKELG+EKDDK+AI+ K+R+++     + +E  + IE EL+K +SLEKNSPEF  T+SYLDWLT
Sbjct:  328 EREVSKLQREISAKVEEKMTEAQRKYFLQEQLKSIKKELGMEKDDKDAIIAKYRQQLSEYPAVPEEVMEVIESELDKFASLEKNSPEFQVTRSYLDWLT 426
[Close]
BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Match: A0A7S4RFD6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RFD6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.750e-26
Identity = 60/101 (59.41%), Postives = 83/101 (82.18%), Query Frame = 1 
Query:   16 EREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDDKEAILNKFRERMK--NSKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYLDWLT 312
            EREV +LQQ+I+ +V++KMT  +R YFL EQLKSIKKELG+EKDDKEA++ K+R+++K  +   +++E  + I+ E+EKLS+LEKNS EFN T+SYLDWLT
Sbjct:  397 EREVSKLQQEIQAKVEEKMTEAQRKYFLTEQLKSIKKELGMEKDDKEALIQKYRKKLKTYSKDAISQEVMETIDSEIEKLSTLEKNSSEFNVTRSYLDWLT 497
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168472.4266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNJ6_ECTSI1.260e-4693.00Lon protease homolog n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YRA9_9STRA1.100e-3371.72Lon protease homolog n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2RZQ8_9STRA2.300e-2963.64Lon protease homolog n=1 Tax=Rhizochromulina marin... [more]
A0A7S2B436_9STRA1.930e-2863.37Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S1BLT3_9STRA3.760e-2864.00Lon protease homolog n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2U8I2_9STRA5.110e-2760.40Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4HR69_9STRA6.290e-2760.61Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4HQU0_9STRA1.520e-2660.61Hypothetical protein (Fragment) n=3 Tax=Odontella ... [more]
A0A7S3P6J3_9STRA2.930e-2659.60Lon protease homolog, mitochondrial n=1 Tax=Amphor... [more]
A0A7S4RFD6_9STRA3.750e-2659.41Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168472contigH-elongata_contig168472:145..1090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue1.5e-39
Seed eggNOG ortholog2880.D7FNJ6
Preferred namePIM1
KEGG koko:K08675
GOsGO:0000002,GO:0000166,GO:0001018,GO:0001067,GO:0001666,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003727,GO:0003824,GO:0004175,GO:0004176,GO:0004252,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005777,GO:0005829,GO:0006139,GO:0006259,GO:0006508,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009266,GO:0009295,GO:0009314,GO:0009408,GO:0009507,GO:0009536,GO:0009628,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010044,GO:0010165,GO:0010212,GO:0010604,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017171,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022607,GO:0030163,GO:0030554,GO:0031974,GO:0031981,GO:0032042,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0035639,GO:0035694,GO:0036094,GO:0036293,GO:0042176,GO:0042221,GO:0042579,GO:0042623,GO:0042645,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043531,GO:0043565,GO:0043632,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0046483,GO:0048518,GO:0050789,GO:0050896,GO:0051131,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051716,GO:0051880,GO:0060255,GO:0065003,GO:0065007,GO:0070011,GO:0070013,GO:0070182,GO:0070407,GO:0070482,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial
EggNOG OGsCOG0466@1,KOG2004@2759
Ec32 ortholog descriptionPim1 homolog, ATP-dependent protease
Ec32 orthologEc-01_005200.1
EC3.4.21.53
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929984.5696745-CDS-H-elongata_contig168472:144..2611622929984.5696745-CDS-H-elongata_contig168472:144..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168472 145..261 -
1691679234.903406-CDS-H-elongata_contig168472:144..2611691679234.903406-CDS-H-elongata_contig168472:144..261Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168472 145..261 -
1622929984.5968237-CDS-H-elongata_contig168472:892..10901622929984.5968237-CDS-H-elongata_contig168472:892..1090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168472 893..1090 -
1691679234.9194958-CDS-H-elongata_contig168472:892..10901691679234.9194958-CDS-H-elongata_contig168472:892..1090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168472 893..1090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168472.4266.1prot_H-elongata_contig168472.4266.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168472 145..1090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168472.4266.1

>prot_H-elongata_contig168472.4266.1 ID=prot_H-elongata_contig168472.4266.1|Name=mRNA_H-elongata_contig168472.4266.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MWYPQEREVLRLQQDIKQQVDQKMTSQKRTYFLQEQLKSIKKELGLEKDD
KEAILNKFRERMKNSKGMTKEAEKAIEEELEKLSSLEKNSPEFNGTKSYL
DWLTQ
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mRNA from alignment at H-elongata_contig168472:145..1090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168472.4266.1 ID=mRNA_H-elongata_contig168472.4266.1|Name=mRNA_H-elongata_contig168472.4266.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=946bp|location=Sequence derived from alignment at H-elongata_contig168472:145..1090- (Himanthalia elongata Himel1 dioecious)
ATGTGGTACCCACAGGAAAGAGAGGTTCTCCGACTTCAGCAGGACATCAA
GCAGCAGGTGGACCAGAAGATGACAAGCCAGAAGCGCACGTACTTTCTCC
AGGAGCAGCTCAAGTCCATCAAGAAGGAGCTGGGTCTGGAGAAAGACGAC
AAGGAAGCGATTCTCAACAAATTCAGGGAGAGGATGAAGAATAGCAAGGT
GCTGATCTGAACGTGCTCGTCTGCCGTGTACCACGACGTTTTATTCTATT
TTATGCTGTACAGAGTAAAGTGATGCTGTACCCGTGCGCGCACCGACGAC
GCTGTGTTGTGTTGTTCCTGACTGATCCAAATGGGACGGCGTGATATTTT
GGTTGCGAGGGACTAGGGCGGGGGCGTGACGGGTTCGACGTTTAAGTTTC
GTGGTGGCTGGATGCAAAGCCGAGCGTTGTTCGTGTTCTTGACTTGGAAA
CCGCTCGAAGTTGCTTGCTTGCCTTGATCGTCGGACCCTTGGGTAGGAAA
ATCCCCGCATCAAATGTTTGACGAGGTCACGAGACTCGCCACCGCTGCAC
ATCTACTAACAGTATGTTTTGTTGAGTATTTGTTTCACGTTTTCCCGATG
GAGGCGGGAGGGGGTGAGGGGGGTACAACCGGCTGGATACCCCCCCCTCC
TTCCCCCTTCTGTCTCGTTGGCTGACTCCGAAGCTCTGCCGCTGCTCCAA
CGATGACCAGGCGCAGCTCTCGAACTCTTACCACAAAAAGCAGGGGGTCT
CTTGAGTTTTATCTGTTATATTTTTGTTAAAATTTATTCCTGGCCTGATG
TGGTCTGGTCCGCTCTTGGATTGCCTTAGGGTATGACCAAAGAAGCGGAA
AAGGCAATCGAAGAGGAACTCGAAAAACTCTCGTCTTTGGAAAAGAACAG
CCCCGAGTTCAACGGTACCAAGAGCTACCTCGACTGGCTGACTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig168472:145..1090-

>mRNA_H-elongata_contig168472.4266.1 ID=mRNA_H-elongata_contig168472.4266.1|Name=mRNA_H-elongata_contig168472.4266.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig168472:145..1090- (Himanthalia elongata Himel1 dioecious)
ATGTGGTACCCACAGGAAAGAGAGGTTCTCCGACTTCAGCAGGACATCAA
GCAGCAGGTGGACCAGAAGATGACAAGCCAGAAGCGCACGTACTTTCTCC
AGGAGCAGCTCAAGTCCATCAAGAAGGAGCTGGGTCTGGAGAAAGACGAC
AAGGAAGCGATTCTCAACAAATTCAGGGAGAGGATGAAGAATAGCAAGAT
GTGGTACCCACAGGAAAGAGAGGTTCTCCGACTTCAGCAGGACATCAAGC
AGCAGGTGGACCAGAAGATGACAAGCCAGAAGCGCACGTACTTTCTCCAG
GAGCAGCTCAAGTCCATCAAGAAGGAGCTGGGTCTGGAGAAAGACGACAA
GGAAGCGATTCTCAACAAATTCAGGGAGAGGATGAAGAATAGCAAGGGTA
TGACCAAAGAAGCGGAAAAGGCAATCGAAGAGGAACTCGAAAAACTCTCG
TCTTTGGAAAAGAACAGCCCCGAGTTCAACGGTACCAAGAGCTACCTCGA
CTGGCTGACTCAGGGTATGACCAAAGAAGCGGAAAAGGCAATCGAAGAGG
AACTCGAAAAACTCTCGTCTTTGGAAAAGAACAGCCCCGAGTTCAACGGT
ACCAAGAGCTACCTCGACTGGCTGACTCAG
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