mRNA_H-elongata_contig168058.4246.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig168058.4246.1
Unique NamemRNA_H-elongata_contig168058.4246.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig168058.4246.1 vs. uniprot
Match: D7G8B3_ECTSI (Importin N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B3_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.640e-16
Identity = 51/98 (52.04%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:    1 QWVPPWLCLVSKTLQSAVDADNSADEDEDQETPGDRNENGLSLGAAGSGGVGAAAGSRFGGREFSVELEALRTGMVLLTHVPSAVGDGHLGQLLSPLW 294
            Q VPPWL LVSKTLQSAVD          +   GDR++NG                      +F VELE LRT MVLL HVPS VGDGHLGQLL PLW
Sbjct:  280 QCVPPWLHLVSKTLQSAVDG---------RAIGGDRDKNGXXXXXX------------XXXXDFGVELEGLRTAMVLLAHVPSTVGDGHLGQLLPPLW 356
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BLAST of mRNA_H-elongata_contig168058.4246.1 vs. uniprot
Match: A0A6H5L6E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 9.360e-15
Identity = 49/98 (50.00%), Postives = 53/98 (54.08%), Query Frame = 1 
Query:    1 QWVPPWLCLVSKTLQSAVDADNSADEDEDQETPGDRNENGLSLGAAGSGGVGAAAGSRFGGREFSVELEALRTGMVLLTHVPSAVGDGHLGQLLSPLW 294
            Q VPPWL LVSKTLQSAVD          +   G R++N                       +F VELE LRT MVLL HVPS VGDGHLGQLL PLW
Sbjct:  167 QCVPPWLHLVSKTLQSAVDG---------RAIDGGRHKNXXXXXXX------------XXXXDFGVELEGLRTAMVLLAHVPSTVGDGHLGQLLPPLW 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig168058.4246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8B3_ECTSI1.640e-1652.04Importin N-terminal domain-containing protein n=1 ... [more]
A0A6H5L6E1_9PHAE9.360e-1550.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig168058contigH-elongata_contig168058:187..1095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue5.7e-14
Seed eggNOG ortholog2880.D7G8B3
Preferred nameIPO9
KEGG rclassRC00002,RC00017
KEGG koko:K00876,ko:K20224
KEGG TC1.I.1
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0022613,GO:0031224,GO:0031267,GO:0031647,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042393,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050821,GO:0051020,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG5657@1,KOG2274@2759
EC2.7.1.48
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929982.3419871-CDS-H-elongata_contig168058:186..4341622929982.3419871-CDS-H-elongata_contig168058:186..434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168058 187..434 +
1691679234.0151281-CDS-H-elongata_contig168058:186..4341691679234.0151281-CDS-H-elongata_contig168058:186..434Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168058 187..434 +
1622929982.3651853-CDS-H-elongata_contig168058:1048..10941622929982.3651853-CDS-H-elongata_contig168058:1048..1094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168058 1049..1094 +
1691679234.0249314-CDS-H-elongata_contig168058:1048..10941691679234.0249314-CDS-H-elongata_contig168058:1048..1094Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig168058 1049..1094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig168058.4246.1prot_H-elongata_contig168058.4246.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig168058 187..1094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig168058.4246.1

>prot_H-elongata_contig168058.4246.1 ID=prot_H-elongata_contig168058.4246.1|Name=mRNA_H-elongata_contig168058.4246.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
QWVPPWLCLVSKTLQSAVDADNSADEDEDQETPGDRNENGLSLGAAGSGG
VGAAAGSRFGGREFSVELEALRTGMVLLTHVPSAVGDGHLGQLLSPLW
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mRNA from alignment at H-elongata_contig168058:187..1095+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig168058.4246.1 ID=mRNA_H-elongata_contig168058.4246.1|Name=mRNA_H-elongata_contig168058.4246.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=909bp|location=Sequence derived from alignment at H-elongata_contig168058:187..1095+ (Himanthalia elongata Himel1 dioecious)
CAATGGGTGCCTCCCTGGCTGTGTCTGGTGTCTAAGACGCTGCAATCGGC
CGTAGATGCCGATAATAGTGCGGACGAGGACGAGGACCAAGAAACCCCGG
GAGACAGAAACGAAAACGGATTATCCCTTGGCGCCGCCGGGAGTGGTGGG
GTCGGCGCTGCCGCCGGGAGCAGGTTTGGAGGAAGGGAGTTCAGCGTGGA
GCTGGAGGCGTTGCGCACGGGAATGGTGCTCCTGACGCACGTGCCTTCGT
GAGTCGCGCCGCGAAACAAGCAGGAGACAACCATACCCGTGTTGATTTAT
ACTATATAACCTCTATATGTTATGGAACACACATAGAAATGTATACTGTA
TTACTTCGTATATAAATATTTCTCGGGGTGCGGGGTGATTTCATTTTTTT
TCGTCGAACCTTACGCCAGTGAAACACGGCGCCCCTTTCCCGTGACAACC
CCCCCCCTCCCCTTCACTCCCCTTCCCTATTTACCCTTTAAAACCCCTAT
GGAACTCGATCTGTTTTTTTAGATACTAAAATCAAACAATAATTGAAATC
CAGTTCCAAAAGGGTACAGGATACAATACAGTCTGAATAGTTTTATCGTA
CCTGGTGCAAATGTTGTTTTAGCTATTTCTTCCCTTTTTCACTTGTTTTA
GCTATTAAACTGCCGTACAACGCTATTTATTATAGAATAATTGATGGTAC
GATAAAGGATAGCAGTTCATGATAATGCCGCTAGAGGAGATTTCGATAAG
GAACGTTGCCTCGCTGAACATGTGCGCAACTCGCGCCGTATTCTGCCCGT
CGGGGGGTTGTAATGGGATGGGGGATATCTTGGGGGGGGGGTGGGGGGGA
TGTCGTGTACAGAGCCGTGGGCGACGGGCACCTTGGTCAGCTGCTATCGC
CGCTATGGG
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Coding sequence (CDS) from alignment at H-elongata_contig168058:187..1095+

>mRNA_H-elongata_contig168058.4246.1 ID=mRNA_H-elongata_contig168058.4246.1|Name=mRNA_H-elongata_contig168058.4246.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig168058:187..1095+ (Himanthalia elongata Himel1 dioecious)
CAATGGGTGCCTCCCTGGCTGTGTCTGGTGTCTAAGACGCTGCAATCGGC
CGTAGATGCCGATAATAGTGCGGACGAGGACGAGGACCAAGAAACCCCGG
GAGACAGAAACGAAAACGGATTATCCCTTGGCGCCGCCGGGAGTGGTGGG
GTCGGCGCTGCCGCCGGGAGCAGGTTTGGAGGAAGGGAGTTCAGCGTGGA
GCTGGAGGCGTTGCGCACGGGAATGGTGCTCCTGACGCACGTGCCTTCCA
ATGGGTGCCTCCCTGGCTGTGTCTGGTGTCTAAGACGCTGCAATCGGCCG
TAGATGCCGATAATAGTGCGGACGAGGACGAGGACCAAGAAACCCCGGGA
GACAGAAACGAAAACGGATTATCCCTTGGCGCCGCCGGGAGTGGTGGGGT
CGGCGCTGCCGCCGGGAGCAGGTTTGGAGGAAGGGAGTTCAGCGTGGAGC
TGGAGGCGTTGCGCACGGGAATGGTGCTCCTGACGCACGTGCCTTCAGCC
GTGGGCGACGGGCACCTTGGTCAGCTGCTATCGCCGCTATGGAGCCGTGG
GCGACGGGCACCTTGGTCAGCTGCTATCGCCGCTATGG
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