mRNA_H-elongata_contig16560.4132.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16560.4132.1
Unique NamemRNA_H-elongata_contig16560.4132.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16560.4132.1 vs. uniprot
Match: D7FZ47_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ47_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 3.460e-20
Identity = 50/103 (48.54%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:   79 AKKKQRCWSFVVTGINRNGPEKKKSDVLASFRERYTAVKKLTLSPA---RGPDTGNINTWEGVRAVVQFIGPQPSQGPGTLLRQLLSGTSVEAVPIILGRGRK 378
            A++KQRCW F V G+  N  E    ++LAS RERYT VK+L + PA   +        +   V   VQF GPQPS+GPG LL  LL G SV+A P+ L RGRK
Sbjct:   38 ARRKQRCWLFQVDGVTSNASE---VELLASIRERYTTVKRLVVRPAATSKDAVAAADGSPRNVVVEVQFTGPQPSEGPGALLCDLLCGVSVDAKPVELPRGRK 137
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BLAST of mRNA_H-elongata_contig16560.4132.1 vs. uniprot
Match: A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.590e-14
Identity = 57/140 (40.71%), Postives = 73/140 (52.14%), Query Frame = 1 
Query:   19 MKTDSIVSVSKGPT----SRRPKLAKKKQRCWSFVVTGINRNGPEKKKSDVLASFRERYTAVKKLTLSPA------RGPDTGNINTWE----------GVRAVVQFIGPQPSQGPGTLLRQLLSGTSVEAVPIILGRGRK 378
            M T S  + S  PT    S RP   ++KQR W F + GI  +  E  + D+  + RERYT VK+L L  A       G +  + +T +          GV   +QF GPQPS+G G LL  LL GTSVEA P+ L RGRK
Sbjct:    1 MATPSSDTPSSSPTGGAGSMRP--VRRKQRGWVFKIDGIANH--EMTEEDLFFAVRERYTTVKRLALKNASPGPASEGAEPASKSTHDRVGFQAAVAGGVLVEIQFAGPQPSEGCGALLCHLLRGTSVEARPVELPRGRK 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16560.4132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZ47_ECTSI3.460e-2048.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JDQ6_9PHAE1.590e-1440.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16560contigH-elongata_contig16560:3172..5896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size381
Cds size363
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16560.4132.1prot_H-elongata_contig16560.4132.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16560 3172..5878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.2050822-CDS-H-elongata_contig16560:3171..34191622929969.2050822-CDS-H-elongata_contig16560:3171..3419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16560 3172..3419 -
1691679228.3840787-CDS-H-elongata_contig16560:3171..34191691679228.3840787-CDS-H-elongata_contig16560:3171..3419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16560 3172..3419 -
1622929969.2200725-CDS-H-elongata_contig16560:5763..58781622929969.2200725-CDS-H-elongata_contig16560:5763..5878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16560 5764..5878 -
1691679228.3986278-CDS-H-elongata_contig16560:5763..58781691679228.3986278-CDS-H-elongata_contig16560:5763..5878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16560 5764..5878 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.2361155-UTR-H-elongata_contig16560:5878..58961622929969.2361155-UTR-H-elongata_contig16560:5878..5896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16560 5879..5896 -
1691679228.411547-UTR-H-elongata_contig16560:5878..58961691679228.411547-UTR-H-elongata_contig16560:5878..5896Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16560 5879..5896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16560.4132.1

>prot_H-elongata_contig16560.4132.1 ID=prot_H-elongata_contig16560.4132.1|Name=mRNA_H-elongata_contig16560.4132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MKTDSIVSVSKGPTSRRPKLAKKKQRCWSFVVTGINRNGPEKKKSDVLAS
FRERYTAVKKLTLSPARGPDTGNINTWEGVRAVVQFIGPQPSQGPGTLLR
QLLSGTSVEAVPIILGRGRKP
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mRNA from alignment at H-elongata_contig16560:3172..5896-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16560.4132.1 ID=mRNA_H-elongata_contig16560.4132.1|Name=mRNA_H-elongata_contig16560.4132.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2725bp|location=Sequence derived from alignment at H-elongata_contig16560:3172..5896- (Himanthalia elongata Himel1 dioecious)
CACCGATCGATTATTATTATGAAGACCGACAGTATTGTCTCTGTCAGCAA
AGGCCCTACATCTCGCCGCCCGAAGTTGGCCAAGAAAAAGCAGCGATGTT
GGTCCTTCGTCGTCACGGGCATCAACAGGAACGGTGGGTGTTGCCGTTAA
TTTACAGCCAGGTTTCGTTCATCTCGGTTCCATAGTGTTTTTGTACCATC
GTGCTCCTATTCGGATGTTGTTGTTAAACTCTGTGTACTGGAAAGAAGAG
GCGGCGATACAGCCGGAGGTGAGGTAACGCGGCGGACGCGGCAGACGCTG
CACCAACAGGAACAAGAACAAGAACAAAATAGCATAATATACTGTATTAA
TATTAGCACGTAAGACTGACTCTAGCCGCGTGTCCTATACTACAGCAGCA
GCAGCAGCAGCATCACCTGCACTCCTCCTGCGGCCTACCATCACCATTCG
TCTCCTGCTCGACGTCTCTCTTTCTTTCTAGCATGATGAAAAATTGTTTC
TATCTCGCCTCGATTGCATGCAGCCGATGATGCTGTGCGCCGTTACCTCC
AAATGATAATATATGATCTAATTACAGAAAGAAGTACAATTCAGTACAGT
AGTAGCAGTATTCAGTCACTTTGTCATTGTAAGTAAATCCGTACGGGATG
TTGCGACCGGTTGCCGTCACTGCATGTTCTGGTTGCCAATCGACTTTTCC
TGTGGTGACTCTCGACTGGCGAGTTTTCCGGAAGTGTTAGAGAAACGAAC
GAATGTCCGATGATACCGATCGGGTTCGCTCTCTGGGGTTTGAAGCTCTC
CGCTAGGCGACGAGGCGACACCTGCTCCAAGTGAACAACGCTTTATCCCC
GCAAGATAATATGTACGTTAATCCCTATGGAACTCGATCTGTTTTTTTTT
ATGCTCTAAATTTAGCATAAAAGTTGAAATCCAGTTCCGAAAGGGTTAAT
ATTCGAGGTGCAGATGTGGGTCTCCAAAACGTTTTCTTAGTAGTAGGTAT
ACATTGCTGATGATGTAACATACTAGTAATAATAGTTATACTTGTATTAT
GTATAACCTACTGCGTTATAGTGTTTAACTTTCGTACTTGGTGGACAGTA
GACGGCGAAGATGGTAAGTGGGTACGTACTGACTGTTTTCGATCGGGGAT
TGATAATGTTTATGGAGGACACGCGGCACGCCACATGCCGGAGCAGGAGG
CGCTCAAATCAATCCCAAGTAAAAGAGGGCTACTGCGGCACTTGTTACAA
TATGCAGCAAAGGTCCACCCTGAATATCGCAGGAGGCGTAATTTTTTGCT
CGTAGCCTTCCTGTTGTCGAGATTATTTCGCCCCATCAGCGCAATGATCA
CACACACACACCACAACAAACTGTAGTTTACGTATGACCTGTTTTTCGCA
TATGGTTTCGATCGAGCCGATTATCAGCCCCTATTTTGGTTCGCTTATCA
ACAGGGAAGTCGGTGGACAGACAGTATATAGCTATACTGTACTACTGCTT
GCAGTAGTAGTAGTTGTCTCTTGCTATTACTGTATCGTAGGCATTGACAC
CTGACCTCCGGTTGGTTGGTGCTGTTGCTGGTTGAGCTTCTTCGGCGTCG
GACTTTTTGTTTTGTAATTCTTATAATAATAATTAATACAACTTCGTACT
ATCTTTGTAGACTAATATTATCCTGGATATCTGACCTAAAATACGACGAT
TATTACAAGAACCACAGCTTTTTTTTTTAATTTGTCAAGTAGATCGGCGG
TGAAATAAATGTGAAATCTGAACACTTCAACAATTCAGATAATCTCTAAT
AATCATAGTTCGCGCGTCCCTTTGACTGGTGACGACTCAGTCTTTATATA
ATGTTGGCATCAGAAAAGTAGCATAATTCAGCGCCCGTATGGCTCCCACA
TGAACGTCCCCGTAACACCGACATCATCCGATAGGTGATGCTGGCCACCC
CTTCTTGGAAATACGTACGACGACTAGATATATACAGTAGTAATAGTATT
AGCCTCAGTCAATCACGACCGGCTATCTTCCGCGTCGGGCTTTGATCAAC
CAGATAGAAAGTGTAACACTCGTGCACCTCGTCAATCAAAGATCGTTTTT
TTCTCGCTGTCATCAACGCGCTTTCCGCTACCACCACAGTTGCCCCCCCC
GGGGATTCCCAGGGCTGACTGGTCCATACGTGGTCGTGCAGTTTACCACC
TGTTGAAATGTTTGAAATGTTTCGCCGGGGCACGTTGGTTGCTATTATTA
CATTTCAGTTACGTTTCATTTCTGCGAAATAAATGTTCCGAGAAAGGGAG
CGCTGCAGTCACCCACGTTTTCCCCTTTTCCCCGTGTGTCGCTGACGAAT
TGTTGGATGGGTACACTGCTACTCGTAACACCAGCAACAATACAAGCATC
CCCATACACCTCCCTCGTGACGTGGCAGTTGTTATCCCCGCGGTCCGCTC
CCCCTTTCTCTCTGCTCACAAGCACAGGTCCAGAAAAAAAGAAGTCGGAC
GTCCTCGCCTCTTTCCGTGAGCGGTACACAGCTGTCAAGAAGTTAACGTT
GAGCCCAGCAAGAGGTCCCGATACGGGTAACATCAACACCTGGGAAGGCG
TGCGCGCCGTAGTCCAGTTCATTGGCCCTCAACCCAGCCAAGGTCCAGGG
ACTCTACTCCGTCAGCTCTTATCTGGAACGTCTGTCGAAGCTGTTCCCAT
TATCCTCGGGCGGGGGCGCAAACCC
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Coding sequence (CDS) from alignment at H-elongata_contig16560:3172..5896-

>mRNA_H-elongata_contig16560.4132.1 ID=mRNA_H-elongata_contig16560.4132.1|Name=mRNA_H-elongata_contig16560.4132.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig16560:3172..5896- (Himanthalia elongata Himel1 dioecious)
ATGAAGACCGACAGTATTGTCTCTGTCAGCAAAGGCCCTACATCTCGCCG
CCCGAAGTTGGCCAAGAAAAAGCAGCGATGTTGGTCCTTCGTCGTCACGG
GCATCAACAGGAACGATGAAGACCGACAGTATTGTCTCTGTCAGCAAAGG
CCCTACATCTCGCCGCCCGAAGTTGGCCAAGAAAAAGCAGCGATGTTGGT
CCTTCGTCGTCACGGGCATCAACAGGAACGGTCCAGAAAAAAAGAAGTCG
GACGTCCTCGCCTCTTTCCGTGAGCGGTACACAGCTGTCAAGAAGTTAAC
GTTGAGCCCAGCAAGAGGTCCCGATACGGGTAACATCAACACCTGGGAAG
GCGTGCGCGCCGTAGTCCAGTTCATTGGCCCTCAACCCAGCCAAGGTCCA
GGGACTCTACTCCGTCAGCTCTTATCTGGAACGTCTGTCGAAGCTGTTCC
CATTATCCTCGGGCGGGGGCGCAAACCCGTCCAGAAAAAAAGAAGTCGGA
CGTCCTCGCCTCTTTCCGTGAGCGGTACACAGCTGTCAAGAAGTTAACGT
TGAGCCCAGCAAGAGGTCCCGATACGGGTAACATCAACACCTGGGAAGGC
GTGCGCGCCGTAGTCCAGTTCATTGGCCCTCAACCCAGCCAAGGTCCAGG
GACTCTACTCCGTCAGCTCTTATCTGGAACGTCTGTCGAAGCTGTTCCCA
TTATCCTCGGGCGGGGGCGCAAACCC
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