mRNA_H-elongata_contig164944.4092.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164944.4092.1
Unique NamemRNA_H-elongata_contig164944.4092.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Match: A0A6H5LAN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN0_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 3.850e-55
Identity = 90/101 (89.11%), Postives = 98/101 (97.03%), Query Frame = 1 
Query:    1 ETRRDIANFLRIFRKDLDPLSIGEFLSEPDVDNGDYWKAIRLQYVRAISFHGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNRDNPSCPFT 303
            +T RDIANFLRI++KDLDPLSIG+FLSEPDVD GDYWKAIRLQYVRAI+FHG TLEEALRHLLTDSGFRLPGESQKVDRL+S+FAECYVADNRDNP+CPFT
Sbjct:  315 DTPRDIANFLRIYKKDLDPLSIGDFLSEPDVDGGDYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFRLPGESQKVDRLVSSFAECYVADNRDNPTCPFT 415
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BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Match: D8LKD8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD8_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.800e-54
Identity = 89/100 (89.00%), Postives = 97/100 (97.00%), Query Frame = 1 
Query:    1 ETRRDIANFLRIFRKDLDPLSIGEFLSEPDVDNGDYWKAIRLQYVRAISFHGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNRDNPSCPF 300
            +T RDIANFLRI++KDLDPLSIG+FLSEPDVD GDYWKAIRLQYVRAI+FHG TLEEALRHLLTDSGFRLPGESQKVDRL+S+FAECYVADNRDNP+CPF
Sbjct:  318 DTPRDIANFLRIYKKDLDPLSIGDFLSEPDVDGGDYWKAIRLQYVRAIAFHGMTLEEALRHLLTDSGFRLPGESQKVDRLVSSFAECYVADNRDNPTCPF 417
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BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Match: A0A835ZFI0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFI0_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.020e-40
Identity = 71/102 (69.61%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:    1 ETRRDIANFLRIFRKDLDPLSIGEFLSEPDVDNGDYWKAIRLQYVRAISFHGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNRDNPSCPFTT 306
            +T RDIANFLR+++ DLDP SIG+FLSEPD+D  DY++ IRLQY+RA++FHG +LEEALRHLLT+SGFRLPGE+QK+DRLLSAFAEC+  DN  +  CPFT+
Sbjct: 1746 DTPRDIANFLRLYQADLDPGSIGDFLSEPDLDGTDYFRLIRLQYIRAVNFHGMSLEEALRHLLTNSGFRLPGEAQKIDRLLSAFAECFFHDNAQH--CPFTS 1845
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BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Match: W7U6C9_9STRA (Brefeldin a-inhibited guanine nucleotide-exchange n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.350e-32
Identity = 59/102 (57.84%), Postives = 76/102 (74.51%), Query Frame = 1 
Query:    1 ETRRDIANFLRIFRKDLDPLSIGEFLSEPD-VDNGDYWKAIRLQYVRAISFHGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNRDNPSCPFT 303
            +T RD+A+FLR++R  LDP +IG++L E     +  YW  +RL YVRA+SFH  TLE+ALRH LT  GFRLPGE+QK+DRL+S FAECY  DN+  P CPF+
Sbjct: 1335 DTPRDVASFLRVYRDLLDPEAIGDYLGEGGHAHDAAYWSLLRLSYVRAVSFHNMTLEQALRHFLTRCGFRLPGEAQKIDRLISVFAECYFQDNQGMPCCPFS 1436
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BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Match: B8BTP5_THAPS (Guanyl nucleotide exchange factor (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTP5_THAPS)

HSP 1 Score: 113 bits (282), Expect = 2.870e-28
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   10 RDIANFLRIFRKDLDPLSIGEFLSEPDVDNGD--YWKAIRLQYVRAISFHGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNR-DNPSCPF 300
            RD+++FLRI +  +DP+ +GE+L E  +D  D  YW  IR  Y RAISF G  +E+ALRH LT  GFRLPGE+QK+DR++S F++CY  DN  D   CPF
Sbjct:  139 RDVSSFLRIQQSSIDPVILGEYLGEGGIDGADKDYWNQIRFNYARAISFVGMNVEQALRHFLTACGFRLPGEAQKIDRIISTFSQCYWEDNAGDLQKCPF 238
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BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Match: A0A7R9VJ36_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VJ36_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.760e-27
Identity = 52/100 (52.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:   10 RDIANFLRIFRKDLDPLSIGEFLSEPDVDNGD--YWKAIRLQYVRAISFHGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNR-DNPSCPF 300
            RD+A+FLR+ +  +DP ++GE+L E  +D  D  YW  IR  YVRAISF G  +E+ LRH LT+ GFRLPGE+Q++DR++S F++CY  DN  D+  CPF
Sbjct:   99 RDVASFLRLHQSKIDPSALGEYLGEGGIDGRDVEYWNLIRFNYVRAISFVGMNVEQGLRHFLTNCGFRLPGEAQRIDRIISTFSQCYWEDNAGDHNRCPF 198
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BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Match: A0A7S4QRS1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QRS1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.860e-27
Identity = 55/100 (55.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:   10 RDIANFLRIFRKDLDPLSIGEFLSEPDVDNGD--YWKAIRLQYVRAISFHGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNR-DNPSCPF 300
            RD+A+FLRI +  LD +++GE+L E   D  D  YW  IR  YVRAISF G  +E+ LRH LT SGFRLPGE+QK+DR++S F++CY  DN  D+  CPF
Sbjct: 1465 RDVASFLRIHQARLDQIALGEYLGEGGKDGADIEYWNLIRFNYVRAISFVGMNVEQGLRHFLTCSGFRLPGEAQKIDRIISTFSQCYWEDNAGDHLRCPF 1564
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BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Match: A0A1E7FPT4_9STRA (SEC7-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FPT4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.860e-27
Identity = 54/99 (54.55%), Postives = 69/99 (69.70%), Query Frame = 1 
Query:   10 RDIANFLRIFRKDLDPLSIGEFLSE--PDVDNGDYWKAIRLQYVRAISFHGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNR-DNPSCP 297
            RDI++FLRI  +DL+P  +G +L E   D    ++W  IR  Y+RAISF G T+EE LRHLLT  GFRLPGE+Q++DRL+S FA CY  DN  D  +CP
Sbjct:  138 RDISSFLRIHCEDLNPSDLGSYLGEGGSDPSETEFWNLIRFNYIRAISFVGMTVEEGLRHLLTQGGFRLPGEAQQIDRLISTFARCYWEDNAGDLINCP 236
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BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Match: A0A7S2LRY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LRY4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 8.230e-26
Identity = 49/100 (49.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:   10 RDIANFLRIFRKDLDPLSIGEFLSEPDVD--NGDYWKAIRLQYVRAISFHGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNR-DNPSCPF 300
            + +++FLR+ +  +DP  +GE+L E  +D  + DYW  IR  YVRA+SF G  +E+ALRH LT+ GFRLPGE+Q++DR++S F++CY  DN  D  +CPF
Sbjct:   96 KHVSSFLRVHQSSIDPAILGEYLGEGGIDGIDKDYWNLIRFYYVRAVSFVGMNIEKALRHFLTNCGFRLPGEAQRIDRVISTFSQCYWEDNAGDIANCPF 195
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BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Match: A0A7S1TSV1_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSV1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.010e-24
Identity = 54/102 (52.94%), Postives = 66/102 (64.71%), Query Frame = 1 
Query:    1 ETRRDIANFLRIFRKDLDPLSIGEFLSEPDVDNGD--YWKAIRLQYVRAISFHGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNRDNPSCPF 300
            +T RDIA+FLR++  +L    IG++L E      D  Y+  IRL YVR ISF G   E ALRH LT  GF+LPGE+QKVDR+LS F   Y ADN+  P CPF
Sbjct: 1296 DTPRDIASFLRLYAYELTEEDIGDYLGEGGATESDEKYYNLIRLSYVRPISFVGMPFEPALRHFLTSCGFKLPGEAQKVDRILSTFCLRYWADNQGTPVCPF 1397
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164944.4092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAN0_9PHAE3.850e-5589.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKD8_ECTSI1.800e-5489.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835ZFI0_9STRA1.020e-4069.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7U6C9_9STRA2.350e-3257.84Brefeldin a-inhibited guanine nucleotide-exchange ... [more]
B8BTP5_THAPS2.870e-2853.00Guanyl nucleotide exchange factor (Fragment) n=1 T... [more]
A0A7R9VJ36_9STRA2.760e-2752.00Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4QRS1_9STRA5.860e-2755.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FPT4_9STRA8.860e-2754.55SEC7-like protein (Fragment) n=1 Tax=Fragilariopsi... [more]
A0A7S2LRY4_9STRA8.230e-2649.00Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S1TSV1_9STRA4.010e-2452.94Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164944contigH-elongata_contig164944:133..836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue2.7e-46
Seed eggNOG ortholog2880.D8LKD8
Preferred nameYEL1
KEGG koko:K12494,ko:K17362,ko:K18442
KEGG Pathwayko04144,map04144
GOsGO:0000139,GO:0001558,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005543,GO:0005547,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005794,GO:0005933,GO:0005934,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006887,GO:0006950,GO:0007163,GO:0008104,GO:0008150,GO:0008289,GO:0008360,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010511,GO:0010513,GO:0010562,GO:0010646,GO:0010647,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0019216,GO:0019220,GO:0019222,GO:0019899,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0030010,GO:0030427,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0032012,GO:0032014,GO:0032153,GO:0032940,GO:0033036,GO:0033554,GO:0034613,GO:0034976,GO:0035091,GO:0040008,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045834,GO:0045937,GO:0046578,GO:0046579,GO:0046889,GO:0046890,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051020,GO:0051056,GO:0051057,GO:0051128,GO:0051174,GO:0051179,GO:0051234,GO:0051285,GO:0051286,GO:0051523,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0061171,GO:0061389,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0071071,GO:0071073,GO:0071702,GO:0071705,GO:0071944,GO:0080090,GO:0098588,GO:0098772,GO:0098791,GO:0099568,GO:0099738,GO:1901981,GO:1902531,GO:1902533,GO:1903725,GO:1903727
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759,KOG1729@1,KOG1729@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929964.8476923-CDS-H-elongata_contig164944:132..2311622929964.8476923-CDS-H-elongata_contig164944:132..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164944 133..231 +
1691679226.4866574-CDS-H-elongata_contig164944:132..2311691679226.4866574-CDS-H-elongata_contig164944:132..231Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164944 133..231 +
1622929964.8807158-CDS-H-elongata_contig164944:626..8361622929964.8807158-CDS-H-elongata_contig164944:626..836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164944 627..836 +
1691679226.501835-CDS-H-elongata_contig164944:626..8361691679226.501835-CDS-H-elongata_contig164944:626..836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164944 627..836 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164944.4092.1prot_H-elongata_contig164944.4092.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164944 133..836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164944.4092.1

>prot_H-elongata_contig164944.4092.1 ID=prot_H-elongata_contig164944.4092.1|Name=mRNA_H-elongata_contig164944.4092.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
ETRRDIANFLRIFRKDLDPLSIGEFLSEPDVDNGDYWKAIRLQYVRAISF
HGKTLEEALRHLLTDSGFRLPGESQKVDRLLSAFAECYVADNRDNPSCPF
TT*
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mRNA from alignment at H-elongata_contig164944:133..836+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164944.4092.1 ID=mRNA_H-elongata_contig164944.4092.1|Name=mRNA_H-elongata_contig164944.4092.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=704bp|location=Sequence derived from alignment at H-elongata_contig164944:133..836+ (Himanthalia elongata Himel1 dioecious)
GAAACCCGCAGAGACATCGCGAACTTCTTGCGCATCTTCAGGAAGGATTT
GGACCCTCTCAGCATTGGAGAGTTCCTCAGCGAGCCGGACGTGGATAACG
TGAGCGTCGTGTTTAAAGAGGCGGGGGGGGTTAGGCGATACGAGACGCGT
GAAGTGTTTGTGATTAATCTGGCACCGATAAGGGCAAGGTAGTGATATTG
AAACCGTTTTACTATTCGTGTCATCGAAGGGAGCCTGGGAGCCTGTCTGG
GTTTGTGTAGTAAAGGGCACTTTTGTTAACCTCGGCAAAGATCCAATCCA
AAATTAACCGAAAATCCGACGAACCGGAACCAGCCAAGCCGTATCGAAAC
AAAGCGAAACTGAAAACACTCCGAGCCGTAAGAGAAAACCCCTGCCAAAC
GAAACCGAAAACTCTGCCAACCGGAACCATCTAAGCGCAAGGTAACGAAG
CCAGCTAAACCGAACCGAAATCAAAACATAACCCAAATCAATAGGGGGAC
TACTGGAAGGCGATCCGGCTCCAGTACGTCCGAGCCATCTCGTTCCACGG
CAAGACCCTAGAGGAGGCCCTGCGGCACCTCCTCACCGACAGCGGCTTTA
GGCTTCCGGGCGAGTCTCAGAAGGTCGACAGATTGCTCTCTGCGTTCGCC
GAGTGCTACGTCGCCGACAACAGGGATAATCCCTCGTGCCCCTTCACCAC
GTGA
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Coding sequence (CDS) from alignment at H-elongata_contig164944:133..836+

>mRNA_H-elongata_contig164944.4092.1 ID=mRNA_H-elongata_contig164944.4092.1|Name=mRNA_H-elongata_contig164944.4092.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig164944:133..836+ (Himanthalia elongata Himel1 dioecious)
GAAACCCGCAGAGACATCGCGAACTTCTTGCGCATCTTCAGGAAGGATTT
GGACCCTCTCAGCATTGGAGAGTTCCTCAGCGAGCCGGACGTGGATAACG
AAACCCGCAGAGACATCGCGAACTTCTTGCGCATCTTCAGGAAGGATTTG
GACCCTCTCAGCATTGGAGAGTTCCTCAGCGAGCCGGACGTGGATAACGG
GGACTACTGGAAGGCGATCCGGCTCCAGTACGTCCGAGCCATCTCGTTCC
ACGGCAAGACCCTAGAGGAGGCCCTGCGGCACCTCCTCACCGACAGCGGC
TTTAGGCTTCCGGGCGAGTCTCAGAAGGTCGACAGATTGCTCTCTGCGTT
CGCCGAGTGCTACGTCGCCGACAACAGGGATAATCCCTCGTGCCCCTTCA
CCACGTGAGGGGACTACTGGAAGGCGATCCGGCTCCAGTACGTCCGAGCC
ATCTCGTTCCACGGCAAGACCCTAGAGGAGGCCCTGCGGCACCTCCTCAC
CGACAGCGGCTTTAGGCTTCCGGGCGAGTCTCAGAAGGTCGACAGATTGC
TCTCTGCGTTCGCCGAGTGCTACGTCGCCGACAACAGGGATAATCCCTCG
TGCCCCTTCACCACGTGA
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