mRNA_H-elongata_contig164217.4059.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164217.4059.1
Unique NamemRNA_H-elongata_contig164217.4059.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Match: A0A6H5KY11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY11_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 5.710e-43
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 1
Query:    1 QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVMGAKGAVEIIFRGKDVAAREKEYTELFCNPLVS 246
            +LLFA+AE+SVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPS EVAVMGAKGAVEIIFRGKDV  REKEYTELFCNP+V+
Sbjct:  417 KLLFAFAEASVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSGEVAVMGAKGAVEIIFRGKDVGEREKEYTELFCNPMVA 498          
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Match: T0ITY9_9SPHN (CoA carboxyltransferase C-terminal domain-containing protein n=3 Tax=Sphingomonadaceae TaxID=41297 RepID=T0ITY9_9SPHN)

HSP 1 Score: 138 bits (348), Expect = 5.760e-40
Identity = 67/90 (74.44%), Postives = 78/90 (86.67%), Query Frame = 1
Query:    1 QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVMGAKGAVEIIFRGK---DVAAREKEYTELFCNPLVSEPFTF 261
            +LLFAYAE++VPK+TVITRKAYGGAYDVMSSKHLRGD+NYAWP+AE+AVMGAKGAVEIIFRGK   ++AAR KEY + F NP V+    F
Sbjct:   37 KLLFAYAEATVPKITVITRKAYGGAYDVMSSKHLRGDLNYAWPTAEIAVMGAKGAVEIIFRGKTADEIAARTKEYEDRFANPFVAASMGF 126          
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Match: A0A836CAR6_9STRA (Propionyl-CoA carboxylase beta chain mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAR6_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.290e-39
Identity = 67/80 (83.75%), Postives = 76/80 (95.00%), Query Frame = 1
Query:    1 QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVMGAKGAVEIIFRGKDVAAREKEYTELFCNPL 240
            +LL+AYAE++VPK+TVITRKAYGGAYDVMSSKHLRGD+NY+WP  E+AVMGAKGAVEIIFRGKDVAARE EY +LFCNPL
Sbjct:  397 KLLYAYAEATVPKITVITRKAYGGAYDVMSSKHLRGDVNYSWPGGEIAVMGAKGAVEIIFRGKDVAAREAEYADLFCNPL 476          
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Match: A0A7S2A1Z6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A1Z6_TRICV)

HSP 1 Score: 136 bits (342), Expect = 4.170e-39
Identity = 65/82 (79.27%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    1 QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVMGAKGAVEIIFRGKDVAAREKEYTELFCNPLVS 246
            +LLFAY E++VPKLTVI RKAYGGAYDVMSSKHLR D NYAWP AEVAVMGAKGA EIIFRGKDV AR +EY E F NP+V+
Sbjct:   36 KLLFAYGEATVPKLTVICRKAYGGAYDVMSSKHLRSDSNYAWPGAEVAVMGAKGAAEIIFRGKDVEARAREYAEKFANPMVA 117          
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Match: A0A7S2MDY0_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2MDY0_9EUKA)

HSP 1 Score: 135 bits (341), Expect = 1.380e-38
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVMGAKGAVEIIFRGKDVAAREKEYTELFCNPLVS 246
            +LL+AYAE++VPK+TVITRKAYGGAYDVMSSKHLRGD+NYAWP AE+AVMGAKGAVEIIFRGKDV A   EY   F NPLV+
Sbjct:   65 KLLYAYAEATVPKVTVITRKAYGGAYDVMSSKHLRGDINYAWPLAEIAVMGAKGAVEIIFRGKDVEANTIEYENKFANPLVA 146          
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Match: A0A7S4IB37_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IB37_9EUKA)

HSP 1 Score: 136 bits (342), Expect = 2.510e-38
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVMGAKGAVEIIFRGKDVAAREKEYTELFCNPLVS 246
            +LLFA+AE++VPK+TVITRKAYGGAYDVMSSKHLRGD NYAWPSAEVAVMGAKGAVEIIFRGK+V A   EY   F NP+V+
Sbjct:   99 KLLFAFAEATVPKITVITRKAYGGAYDVMSSKHLRGDFNYAWPSAEVAVMGAKGAVEIIFRGKNVEAETAEYERKFANPMVA 180          
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Match: A0A7S2RD78_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD78_9STRA)

HSP 1 Score: 142 bits (357), Expect = 5.920e-38
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = 1
Query:    1 QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVMGAKGAVEIIFRGKDVAAREKEYTELFCNPLVS 246
            +LLFAYAE++VPK+TVITRKAYGGAYDVMSSKHLRGD NYAWPSAEVAVMGAKGAVEIIFRGKDV A   +YTE F NPL++
Sbjct:  413 KLLFAYAEATVPKITVITRKAYGGAYDVMSSKHLRGDTNYAWPSAEVAVMGAKGAVEIIFRGKDVEAETNKYTERFANPLLA 494          
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Match: A0A812XN62_9DINO (PCCB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812XN62_9DINO)

HSP 1 Score: 137 bits (345), Expect = 7.230e-38
Identity = 65/81 (80.25%), Postives = 74/81 (91.36%), Query Frame = 1
Query:    1 QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVMGAKGAVEIIFRGKDVAAREKEYTELFCNPLV 243
            +LL+AYA ++VPKLTVITRKAYGGAYDVMSSKHLRGD+NYAWPSAE+AVMGAKGAVEIIFRGK+V  + +EYT  F NPLV
Sbjct:  165 KLLYAYAGANVPKLTVITRKAYGGAYDVMSSKHLRGDVNYAWPSAEIAVMGAKGAVEIIFRGKNVEEKTEEYTRAFANPLV 245          
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Match: R7V957_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7V957_CAPTE)

HSP 1 Score: 141 bits (356), Expect = 8.410e-38
Identity = 65/80 (81.25%), Postives = 75/80 (93.75%), Query Frame = 1
Query:    1 QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVMGAKGAVEIIFRGKDVAAREKEYTELFCNPL 240
            +LL+AYAE++VPK+T+ITRKAYGGAYDVMSSKHLRGD+NYAWP+AEVAVMGAKGAV+IIFRGKD  A+EKEY ELF NP 
Sbjct:  415 KLLYAYAEATVPKITIITRKAYGGAYDVMSSKHLRGDINYAWPTAEVAVMGAKGAVQIIFRGKDTEAKEKEYMELFANPF 494          
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Match: A0A5A8EFN3_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EFN3_CAFRO)

HSP 1 Score: 141 bits (356), Expect = 9.530e-38
Identity = 68/80 (85.00%), Postives = 74/80 (92.50%), Query Frame = 1
Query:    1 QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVMGAKGAVEIIFRGKDVAAREKEYTELFCNPL 240
            +LL+AYAE+SVPKLTVITRKAYGGAYDVMSSKHLRGD NYAWPSA++AVMGAKGAVEIIFRGKD+  RE EYTE F NPL
Sbjct:  427 KLLYAYAEASVPKLTVITRKAYGGAYDVMSSKHLRGDGNYAWPSAQIAVMGAKGAVEIIFRGKDLEKRELEYTEKFANPL 506          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164217.4059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY11_9PHAE5.710e-4390.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
T0ITY9_9SPHN5.760e-4074.44CoA carboxyltransferase C-terminal domain-containi... [more]
A0A836CAR6_9STRA1.290e-3983.75Propionyl-CoA carboxylase beta chain mitochondrial... [more]
A0A7S2A1Z6_TRICV4.170e-3979.27Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2MDY0_9EUKA1.380e-3879.27Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S4IB37_9EUKA2.510e-3879.27Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2RD78_9STRA5.920e-3882.93Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A812XN62_9DINO7.230e-3880.25PCCB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
R7V957_CAPTE8.410e-3881.25Uncharacterized protein n=1 Tax=Capitella teleta T... [more]
A0A5A8EFN3_CAFRO9.530e-3885.00Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164217contigH-elongata_contig164217:351..943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.1
Seed ortholog evalue3.8e-36
Seed eggNOG ortholog2880.D8LQL0
KEGG rclassRC00097,RC00367,RC00609,RC00942
KEGG koko:K01966,ko:K01969
KEGG ReactionR01859,R04138
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00036,M00373,M00741
EggNOG free text desc.CoA carboxylase activity
EggNOG OGsCOG4799@1,KOG0540@2759
EC2.1.3.15,6.4.1.3,6.4.1.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncarboxylase
Ec32 orthologEc-10_006070.1
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.7941895-CDS-H-elongata_contig164217:350..5011622929960.7941895-CDS-H-elongata_contig164217:350..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164217 351..501 -
1691679224.7544034-CDS-H-elongata_contig164217:350..5011691679224.7544034-CDS-H-elongata_contig164217:350..501Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164217 351..501 -
1622929960.8173828-CDS-H-elongata_contig164217:821..9431622929960.8173828-CDS-H-elongata_contig164217:821..943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164217 822..943 -
1691679224.7650506-CDS-H-elongata_contig164217:821..9431691679224.7650506-CDS-H-elongata_contig164217:821..943Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164217 822..943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164217.4059.1prot_H-elongata_contig164217.4059.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164217 351..943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164217.4059.1

>prot_H-elongata_contig164217.4059.1 ID=prot_H-elongata_contig164217.4059.1|Name=mRNA_H-elongata_contig164217.4059.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
QLLFAYAESSVPKLTVITRKAYGGAYDVMSSKHLRGDMNYAWPSAEVAVM
GAKGAVEIIFRGKDVAAREKEYTELFCNPLVSEPFTFPVQ*
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mRNA from alignment at H-elongata_contig164217:351..943-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164217.4059.1 ID=mRNA_H-elongata_contig164217.4059.1|Name=mRNA_H-elongata_contig164217.4059.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=593bp|location=Sequence derived from alignment at H-elongata_contig164217:351..943- (Himanthalia elongata Himel1 dioecious)
CAGCTTCTTTTCGCGTACGCCGAATCTTCGGTTCCGAAACTCACCGTCAT CACTCGCAAGGCCTACGGAGGAGCGTATGACGTCATGAGCTCCAAGCACT TGAGAGGGGACATGAACTACGCGTGAGTCTGCTTGCTGCGCTGGCGACTC GAAAGATCGCGGTGCGACCTCCTGCTGCTAATCTCCACATCTTGTGAAGC CCCCCCCCCACCCCCCACCCCCCTCCTTCGAAGTGTCCCTTACTCCCCAG CCGTAGGCAGTAAGGTGATGACAAAACAAAACCGGAAATTTGTTAATAAT TAGCTCTCTGCCTCCCGCCCCCCATCTATATTCCAGAATGATGTATGAGC TAGCTCTAAAAACGCTGCGCGTCGTGTGGGGTCGTAATATATATATTTTT TGCGGCGATGCAACACGCCCAACGATGCCCGGTGCCGCGCAGGTGGCCTT CGGCCGAGGTGGCGGTTATGGGAGCCAAAGGCGCGGTGGAAATCATTTTC CGCGGAAAGGACGTTGCCGCTCGAGAGAAGGAGTACACGGAGCTCTTTTG CAACCCCTTGGTGAGCGAACCCTTCACCTTCCCCGTCCAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig164217:351..943-

>mRNA_H-elongata_contig164217.4059.1 ID=mRNA_H-elongata_contig164217.4059.1|Name=mRNA_H-elongata_contig164217.4059.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig164217:351..943- (Himanthalia elongata Himel1 dioecious)
CAGCTTCTTTTCGCGTACGCCGAATCTTCGGTTCCGAAACTCACCGTCAT
CACTCGCAAGGCCTACGGAGGAGCGTATGACGTCATGAGCTCCAAGCACT
TGAGAGGGGACATGAACTACGCCAGCTTCTTTTCGCGTACGCCGAATCTT
CGGTTCCGAAACTCACCGTCATCACTCGCAAGGCCTACGGAGGAGCGTAT
GACGTCATGAGCTCCAAGCACTTGAGAGGGGACATGAACTACGCGTGGCC
TTCGGCCGAGGTGGCGGTTATGGGAGCCAAAGGCGCGGTGGAAATCATTT
TCCGCGGAAAGGACGTTGCCGCTCGAGAGAAGGAGTACACGGAGCTCTTT
TGCAACCCCTTGGTGAGCGAACCCTTCACCTTCCCCGTCCAATGAGTGGC
CTTCGGCCGAGGTGGCGGTTATGGGAGCCAAAGGCGCGGTGGAAATCATT
TTCCGCGGAAAGGACGTTGCCGCTCGAGAGAAGGAGTACACGGAGCTCTT
TTGCAACCCCTTGGTGAGCGAACCCTTCACCTTCCCCGTCCAATGA
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