mRNA_H-elongata_contig100382.41.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100382.41.1
Unique NamemRNA_H-elongata_contig100382.41.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100382.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100382contigH-elongata_contig100382:1412..2339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size400
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100382.41.1prot_H-elongata_contig100382.41.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100382 1413..2339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.400445-CDS-H-elongata_contig100382:1412..14721622929546.400445-CDS-H-elongata_contig100382:1412..1472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100382 1413..1472 -
1691679063.4168024-CDS-H-elongata_contig100382:1412..14721691679063.4168024-CDS-H-elongata_contig100382:1412..1472Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100382 1413..1472 -
1622929546.4173129-CDS-H-elongata_contig100382:1659..18641622929546.4173129-CDS-H-elongata_contig100382:1659..1864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100382 1660..1864 -
1691679063.424379-CDS-H-elongata_contig100382:1659..18641691679063.424379-CDS-H-elongata_contig100382:1659..1864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100382 1660..1864 -
1622929546.4325225-CDS-H-elongata_contig100382:2205..23391622929546.4325225-CDS-H-elongata_contig100382:2205..2339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100382 2206..2339 -
1691679063.4345064-CDS-H-elongata_contig100382:2205..23391691679063.4345064-CDS-H-elongata_contig100382:2205..2339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100382 2206..2339 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100382.41.1

>prot_H-elongata_contig100382.41.1 ID=prot_H-elongata_contig100382.41.1|Name=mRNA_H-elongata_contig100382.41.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
WRGAAALAFYRKQIGAVISVQSRWRCALAVTEYRRTISAVQTIQMWWRLK
QNEATACTAIAAWWRSVRGVERFRRTRDIVVALQSIVRGRRARREVGALG
RRFSRYKAAKMIQAALRGMSVRRAACRQIAVAR
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mRNA from alignment at H-elongata_contig100382:1412..2339-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100382.41.1 ID=mRNA_H-elongata_contig100382.41.1|Name=mRNA_H-elongata_contig100382.41.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=928bp|location=Sequence derived from alignment at H-elongata_contig100382:1412..2339- (Himanthalia elongata Himel1 dioecious)
TGGCGTGGCGCAGCTGCCTTGGCGTTCTATCGCAAACAGATCGGCGCCGT
CATTTCCGTTCAGTCCAGGTGGAGATGTGCTCTGGCGGTTACGGAATATC
GCCGAACAATCTCTGCCGTACAAACGATCCAGATGTAAGTGTGTTTTACA
TGTCCGTTTCGAAGATGGCGAGAAAAACACAATTTGTTTTTTCTAATGAT
CAGCAACCAATTCAAGGTCAAATCACAATTTTTCTCCTGCTAATGCATTT
GGTACCTTATTGAAAGGTTATAACATGTGACATTAATTCGTTTCATTTTA
GGATATCTTACCTTAAATAGTTCTACTAATTTCTTTTTTGCCGAACCTCA
TTTTAAGTCGTCATGAAGTTAGATAATTCCACTTTTCACCGTCTCATTGA
AGGCCCAAAATTCCATGGACTTCGTTTTTCTTTTTGTCAATATTTTTGTC
ATTGCTTCTTAACGTACGTGTATAGGTGGTGGCGATTGAAACAAAACGAA
GCCACTGCATGCACGGCAATCGCTGCATGGTGGCGTTCTGTGCGCGGCGT
AGAGCGATTTCGCCGGACGCGCGATATCGTCGTGGCCCTTCAGAGCATCG
TTCGTGGTAGGCGCGCTCGGCGAGAGGTTGGCGCCCTCGGCCGTCGTTTC
TCGAGATACAAGGCCGCGAAGATGATCCAGGTGCACGCACGCTGACGTAG
GTGTCCGTTTTTGGTCTGATGCATTAGGATGGTACACCCCATAGTACTTC
CGAGAGCATTTACAGTACATCGCTGGGCAGAGAACCGTACCTCCGCTAAA
TGGCAGTTAGCTTTGTTTGATTCTAATTTTTCACATTTTTCGTACTCCAA
AATGTTGTCTTGTTCAGGCGGCGTTGCGAGGAATGTCTGTGAGACGCGCA
GCGTGCCGTCAAATAGCGGTCGCCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig100382:1412..2339-

>mRNA_H-elongata_contig100382.41.1 ID=mRNA_H-elongata_contig100382.41.1|Name=mRNA_H-elongata_contig100382.41.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig100382:1412..2339- (Himanthalia elongata Himel1 dioecious)
TGGCGTGGCGCAGCTGCCTTGGCGTTCTATCGCAAACAGATCGGCGCCGT
CATTTCCGTTCAGTCCAGGTGGAGATGTGCTCTGGCGGTTACGGAATATC
GCCGAACAATCTCTGCCGTACAAACGATCCAGATTGGCGTGGCGCAGCTG
CCTTGGCGTTCTATCGCAAACAGATCGGCGCCGTCATTTCCGTTCAGTCC
AGGTGGAGATGTGCTCTGGCGGTTACGGAATATCGCCGAACAATCTCTGC
CGTACAAACGATCCAGATGTGGTGGCGATTGAAACAAAACGAAGCCACTG
CATGCACGGCAATCGCTGCATGGTGGCGTTCTGTGCGCGGCGTAGAGCGA
TTTCGCCGGACGCGCGATATCGTCGTGGCCCTTCAGAGCATCGTTCGTGG
TAGGCGCGCTCGGCGAGAGGTTGGCGCCCTCGGCCGTCGTTTCTCGAGAT
ACAAGGCCGCGAAGATGATCCAGGTGGTGGCGATTGAAACAAAACGAAGC
CACTGCATGCACGGCAATCGCTGCATGGTGGCGTTCTGTGCGCGGCGTAG
AGCGATTTCGCCGGACGCGCGATATCGTCGTGGCCCTTCAGAGCATCGTT
CGTGGTAGGCGCGCTCGGCGAGAGGTTGGCGCCCTCGGCCGTCGTTTCTC
GAGATACAAGGCCGCGAAGATGATCCAGGCGGCGTTGCGAGGAATGTCTG
TGAGACGCGCAGCGTGCCGTCAAATAGCGGTCGCCCGAGCGGCGTTGCGA
GGAATGTCTGTGAGACGCGCAGCGTGCCGTCAAATAGCGGTCGCCCGA
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