mRNA_H-elongata_contig16399.4043.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16399.4043.1
Unique NamemRNA_H-elongata_contig16399.4043.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 2.440e-62
Identity = 127/351 (36.18%), Postives = 199/351 (56.70%), Query Frame = 1
Query:   73 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
            + +K  +  K  ++GK++ +K +LVA+GF Q+  V Y     P P +ASI+++L     K   L H+D KQA+    +DE++++++P         +    +AI+GL Q+GR W     D +   G EQ K DPC+FRK+VD  V +++V++VDDIL   +D+   +   A L  KF  K++G+ +++ GC I R+ +A  L+I Q   + SM+E F+VK  S+IPAT G     K        E EE   +P R A+G +MW +  +  D++ AVRAVAR    P   H   + KI+ +L  T+D GITY  +G GL + VY+D+ + A  + RRSVSG+   +    +S
Sbjct:  782 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVS 1122          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 2.880e-62
Identity = 127/351 (36.18%), Postives = 199/351 (56.70%), Query Frame = 1
Query:   73 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
            + +K  +  K  ++GK++ +K +LVA+GF Q+  V Y     P P +ASI+++L     K   L H+D KQA+    +DE++++++P         +    +AI+GL Q+GR W     D +   G EQ K DPC+FRK+VD  V +++V++VDDIL   +D+   +   A L  KF  K++G+ +++ GC I R+ +A  L+I Q   + SM+E F+VK  S+IPAT G     K        E EE   +P R A+G +MW +  +  D++ AVRAVAR    P   H   + KI+ +L  T+D GITY  +G GL + VY+D+ + A  + RRSVSG+   +    +S
Sbjct: 1161 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVS 1501          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 2.910e-62
Identity = 127/351 (36.18%), Postives = 199/351 (56.70%), Query Frame = 1
Query:   73 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
            + +K  +  K  ++GK++ +K +LVA+GF Q+  V Y     P P +ASI+++L     K   L H+D KQA+    +DE++++++P         +    +AI+GL Q+GR W     D +   G EQ K DPC+FRK+VD  V +++V++VDDIL   +D+   +   A L  KF  K++G+ +++ GC I R+ +A  L+I Q   + SM+E F+VK  S+IPAT G     K        E EE   +P R A+G +MW +  +  D++ AVRAVAR    P   H   + KI+ +L  T+D GITY  +G GL + VY+D+ + A  + RRSVSG+   +    +S
Sbjct: 1181 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVS 1521          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 226 bits (576), Expect = 2.940e-62
Identity = 127/351 (36.18%), Postives = 199/351 (56.70%), Query Frame = 1
Query:   73 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
            + +K  +  K  ++GK++ +K +LVA+GF Q+  V Y     P P +ASI+++L     K   L H+D KQA+    +DE++++++P         +    +AI+GL Q+GR W     D +   G EQ K DPC+FRK+VD  V +++V++VDDIL   +D+   +   A L  KF  K++G+ +++ GC I R+ +A  L+I Q   + SM+E F+VK  S+IPAT G     K        E EE   +P R A+G +MW +  +  D++ AVRAVAR    P   H   + KI+ +L  T+D GITY  +G GL + VY+D+ + A  + RRSVSG+   +    +S
Sbjct: 1324 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVS 1664          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 4.550e-61
Identity = 122/351 (34.76%), Postives = 199/351 (56.70%), Query Frame = 1
Query:   73 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
            + +K  +  K  ++GK++ +K +LVA+GF Q+  V Y     P P +ASI+++L     K   L H+D KQA+    +DE++++++P         +    +AI+GL Q+GR W     D +   G EQ K DPC+FRK+VD  V +++V++VDDIL   +D+   +   A L  KF  K++ + +++ GC I R+ +   L+I Q   + SM++ F+V+  S+IPA+ GV    K D+ +  E       +P R A+G +MW +  +  D++ AVRAVAR    P   H   + KI+ +L  T+D GITY  +G GL + VY+D+ + A  + RRSVSG+   +    +S
Sbjct:  336 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVS 676          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 214 bits (546), Expect = 1.230e-60
Identity = 131/379 (34.56%), Postives = 213/379 (56.20%), Query Frame = 1
Query:    4 TDMRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPE---------EYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVK--KGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLIL 1107
            ++++ ++ N  +K V +   +  IG + ++  K  + G+V +YK +LVA+G+ Q  G+ Y E Y P     S++ +L    A+  E+   D   AFL   ++E++Y+E+PE         E +     V  L ++++GL QA R WN  +   + + G E A  DPC++ +  +GE E +V ++VDD+L  +  KA +    A +  KF++KD+G AR+ +G  I  + + R L I Q    +S+++ F  +  K    P   GV  L+KADE +  E++ +M++ PYR  VG LM+ A  T  DI+ AV  ++RF ENPG  H    +K++++LL TKD GI YDG   G   E Y D+D+    D RRSVSG++L+L
Sbjct:   87 SELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLML 462          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA)

HSP 1 Score: 214 bits (546), Expect = 2.250e-60
Identity = 132/379 (34.83%), Postives = 214/379 (56.46%), Query Frame = 1
Query:    4 TDMRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPE---------EYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVK--KGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLIL 1107
            +++  +V N  +K V +   +  IG + ++  K  +  +  +YK +LVA+G+ Q   + Y E Y P     SI+ +LV  +A+  E+   D   AFL   ++E++Y+E+PE         E Q     V  L ++++GL  A R WN+ +   + ++G E A  DPC++ +  +GE E +V ++VD++L  +  KA +    A +  KF++KD+G AR+ +G  I  N + R L I Q    +S+++TF  +  K    P   GV  L+KADE +  E++ +M++ PYR  VG LM+ A  T  D++ AV  ++RF ENPG  H    +K +++LL TKD GI YDGQ  G  +E Y D+D+    D RRSVSG++L+L
Sbjct:  120 SELESLVANKTWKLVPKPVHQRPIGCRWVFALKRDEKRQAVRYKARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLLML 495          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 213 bits (543), Expect = 1.050e-59
Identity = 130/379 (34.30%), Postives = 216/379 (56.99%), Query Frame = 1
Query:    4 TDMRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPE---------EYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVK--KGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLIL 1107
            ++++ ++ N  +K V +   +  IG + ++  K  + G+V +YK +LVA+G+ Q  G+ Y E Y P     SI+ +L   +A+  E+   D   AFL   ++E++Y+E+ E         E +     V  L ++++GL QA R WN  +   + ++G E A +DPC++ +  +GE E +V ++VDD+L  +  KA +    A +  KF++KD+G AR+ +G  I  + + R L I Q    +S+++ F  +  K    P   GV  L+KADE +  E++ +M++ PYR  VG LM+ +  T  DI+ AV  ++RF ENPG  H    +K++++LL TKD GI YDG   G  +E Y D+D+    D RRSVSG++L+L
Sbjct:  152 SELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLML 527          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR)

HSP 1 Score: 213 bits (542), Expect = 1.960e-58
Identity = 134/380 (35.26%), Postives = 205/380 (53.95%), Query Frame = 1
Query:    1 KTDMRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGA--VGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPE---EREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
            K +M  MV N V+  V        IG K ++  K    G +E+YK +LVA+GF Q EG+ YTE + P     S ++++   A  + EL   D K AFL   ++E++Y++ PE +    G   V  LN++I+GL QA R W  K ++ + + G E+   D C+++KV  G     +V++VDDIL    DK  +      L   F +KD+G+A Y +G  I R+     L + Q   +  ++E FN+K  S  P+ + +    + + S+ P+   ERE M+N PY  AVG LM+  + T  DIA AV  + R+  NPG  H K   K+M++L  TK++ + Y      L +  Y DSD+  C+DTR+S SG V +LA  A+S
Sbjct:  453 KEEMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCS--PSVAPIVKGDRFELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKNFMLMYKRTD-NLEVIGYSDSDYAGCIDTRKSTSGYVFMLASGAVS 828          
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 213 bits (543), Expect = 2.270e-58
Identity = 130/384 (33.85%), Postives = 216/384 (56.25%), Query Frame = 1
Query:    4 TDMRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKF---------PGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVK--KGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAI 1122
            +++  ++ N  +K V +   +  IG + ++  K  + G+V +YK +LVA+G+ Q  G+ Y E Y P     SI+ +L   +A+  E+   D   AFL   ++ ++Y+E+PEE ++             V  L ++++GL QA R WN  +  ++ ++G E A  DPC++ +  +GE E +V ++VDD+L  +   A +    A +  KF++KD+G AR+ +G  I  + + R L I Q    +S+++ F  +  K    P   GV  L+KADE +  E++ +M+  PYR  VG LM+ A  T  DI+ AV  ++RF ENPG  H    +K++++LL TKD GI YDG   G  +E Y D+D+    D RRSVSG++L+L +  +
Sbjct:  418 SELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPV 798          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE2.440e-6236.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.880e-6236.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.910e-6236.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.940e-6236.18Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JC10_9PHAE4.550e-6134.76Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q908_9STRA1.230e-6034.56Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3Q8N8_9STRA2.250e-6034.83Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3DSS8_9STRA1.050e-5934.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3LA50_TRIPR1.960e-5835.26Putative retrotransposon Ty1-copia subclass protei... [more]
A0A6A3YGI7_9STRA2.270e-5833.85Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16399contigH-elongata_contig16399:3143..4267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score114.0
Seed ortholog evalue7.9e-23
Seed eggNOG ortholog126957.SMAR012572-PA
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1125
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16399.4043.1prot_H-elongata_contig16399.4043.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16399 3671..4258 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.8211946-UTR-H-elongata_contig16399:3142..36701622929958.8211946-UTR-H-elongata_contig16399:3142..3670Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16399 3143..3670 -
1691679223.803807-UTR-H-elongata_contig16399:3142..36701691679223.803807-UTR-H-elongata_contig16399:3142..3670Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16399 3143..3670 -
1622929958.8555179-UTR-H-elongata_contig16399:4258..42671622929958.8555179-UTR-H-elongata_contig16399:4258..4267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16399 4259..4267 -
1691679223.8203878-UTR-H-elongata_contig16399:4258..42671691679223.8203878-UTR-H-elongata_contig16399:4258..4267Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16399 4259..4267 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.8362663-CDS-H-elongata_contig16399:3670..42581622929958.8362663-CDS-H-elongata_contig16399:3670..4258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16399 3671..4258 -
1691679223.812787-CDS-H-elongata_contig16399:3670..42581691679223.812787-CDS-H-elongata_contig16399:3670..4258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16399 3671..4258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16399.4043.1

>prot_H-elongata_contig16399.4043.1 ID=prot_H-elongata_contig16399.4043.1|Name=mRNA_H-elongata_contig16399.4043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
MRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGF
WQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGID
EKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQ
AKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*
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mRNA from alignment at H-elongata_contig16399:3143..4267-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16399.4043.1 ID=mRNA_H-elongata_contig16399.4043.1|Name=mRNA_H-elongata_contig16399.4043.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1125bp|location=Sequence derived from alignment at H-elongata_contig16399:3143..4267- (Himanthalia elongata Himel1 dioecious)
AAAACAGATATGCGTGGCATGGTCGAGAACTGCGTTTATAAGCAGGTGGC TCGGCAAAAAGATAAGCTTGTGATTGGCACAAAAATGCTCTACATGCGAA AGGTTGGACAGGACGGCAAGGTCGAGAAGTACAAGTGCCAACTTGTAGCT CAAGGGTTCTGGCAGGTGGAAGGTGTACACTATACGGAAAAATACTTGCC CACGCCAGTGACCGCGTCAATCCAGATGCTTTTGGTGACGACAGCGGCCA AGGACGGAGAACTGCGCCATTTCGACGCAAAGCAGGCATTCTTGAAGGTG GGTATAGATGAGAAGTTGTATATTGAGATCCCCGAGGAGTACCAGAAGTT TCCGGGGGCAGTGGGATGGCTGAACAAGGCCATTCACGGACTCATACAGG CAGGGAGGTGCTGGAACAACAAGGTTTACGACGATATGGCAGCGATTGGG TTGGAGCAGGCAAAGGAGGATCCGTGCATGTTCCGTAAGGTCGTTGACGG CGAGGTGGAAGTGGTGGTAGTCGTACACGTAGACGACATTCTTGCTCACG CCACAGACAAAGCGACGATGGATAGATTCGCGGCTGAGCTTGGATAAAAA TTCAAATTGAAGGACATAGGCGACGCCAGGTACTACATGGGCTGTCACAT TACTAGGAACTACAAGGCGCGTAAGCTGAAGATCGACCAACACTTGAACG TGAAGTCGATGATGGAAACGTTCAACGTCAAAAAGGGAAGCAAGATACCG GCTACTTCGGGGGTACCAACACTCTCAAAGGCGGACGAGTCGCGGAACCC GGAGGAGAGGGAAGAAATGAGGAATTTTCCATACCGGGTGGCAGTGGGGG TGCTTATGTGGACGGCGATGACAACATGGACGGACATTGCGAGCGCAGTA CGTGCTGTGGCCAGGTTCTGCGAAAACCCTGGCCCGGCGCATAATAAGGA AGTGATGAAGATTATGCAGTTTCTCCTTCATACGAAGGATTGGGGGATTA CATACGATGGACAGGGCTGTGGACTCTGCATGGAGGTATACATCGACTCA GATTTTGAAGCCTGCCTGGATACGAGACGATCGGTGTCGGGTGTGGTGTT GATACTGGCGAAGGAGGCGATCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig16399:3143..4267-

>mRNA_H-elongata_contig16399.4043.1 ID=mRNA_H-elongata_contig16399.4043.1|Name=mRNA_H-elongata_contig16399.4043.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig16399:3143..4267- (Himanthalia elongata Himel1 dioecious)
ATGCGTGGCATGGTCGAGAACTGCGTTTATAAGCAGGTGGCTCGGCAAAA
AGATAAGCTTGTGATTGGCACAAAAATGCTCTACATGCGAAAGGTTGGAC
AGGACGGCAAGGTCGAGAAGTACAAGTGCCAACTTGTAGCTCAAGGGTTC
TGGCAGGTGGAAGGTGTACACTATACGGAAAAATACTTGCCCACGCCAGT
GACCGCGTCAATCCAGATGCTTTTGGTGACGACAGCGGCCAAGGACGGAG
AACTGCGCCATTTCGACGCAAAGCAGGCATTCTTGAAGGTGGGTATAGAT
GAGAAGTTGTATATTGAGATCCCCGAGGAGTACCAGAAGTTTCCGGGGGC
AGTGGGATGGCTGAACAAGGCCATTCACGGACTCATACAGGCAGGGAGGT
GCTGGAACAACAAGGTTTACGACGATATGGCAGCGATTGGGTTGGAGCAG
GCAAAGGAGGATCCGTGCATGTTCCGTAAGGTCGTTGACGGCGAGGTGGA
AGTGGTGGTAGTCGTACACGTAGACGACATTCTTGCTCACGCCACAGACA
AAGCGACGATGGATAGATTCGCGGCTGAGCTTGGATAAATGCGTGGCATG
GTCGAGAACTGCGTTTATAAGCAGGTGGCTCGGCAAAAAGATAAGCTTGT
GATTGGCACAAAAATGCTCTACATGCGAAAGGTTGGACAGGACGGCAAGG
TCGAGAAGTACAAGTGCCAACTTGTAGCTCAAGGGTTCTGGCAGGTGGAA
GGTGTACACTATACGGAAAAATACTTGCCCACGCCAGTGACCGCGTCAAT
CCAGATGCTTTTGGTGACGACAGCGGCCAAGGACGGAGAACTGCGCCATT
TCGACGCAAAGCAGGCATTCTTGAAGGTGGGTATAGATGAGAAGTTGTAT
ATTGAGATCCCCGAGGAGTACCAGAAGTTTCCGGGGGCAGTGGGATGGCT
GAACAAGGCCATTCACGGACTCATACAGGCAGGGAGGTGCTGGAACAACA
AGGTTTACGACGATATGGCAGCGATTGGGTTGGAGCAGGCAAAGGAGGAT
CCGTGCATGTTCCGTAAGGTCGTTGACGGCGAGGTGGAAGTGGTGGTAGT
CGTACACGTAGACGACATTCTTGCTCACGCCACAGACAAAGCGACGATGG
ATAGATTCGCGGCTGAGCTTGGATAA
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