prot_H-elongata_contig16392.4040.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig16392.4040.1
Unique Nameprot_H-elongata_contig16392.4040.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length695
Homology
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A6H5KQ21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ21_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 5.480e-56
Identity = 286/621 (46.05%), Postives = 325/621 (52.33%), Query Frame = 0
Query:    1 MEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDKVSTAAHRGARLRNGTQLRGRTGASGNDDGDADAKDFLGANLRRSRTSAQASVLAASNTLS------KPRGRQSRTSRAAEAGGSWAAISPPRRGRRSSVSREPAKAYSRDLSPGSWEEDDXXXXXXXXXXXXXXXXXXXXXSGRTRKARGVRRGRGRSVPEESDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDSGGMGVEEAEAQEXXXXXXXXXXXXXXXMKRKAAAMAGATAAAPVPAVDVDVPTTWDCPTCTVDNELTNTKCHLCGERRPASAIPGGARKRRRQLTARLGTDHGGGSXXXXXXXXXXXXXXXXGGDVSAGSSRPRGSGRRGARXXXXXXXXXXXXXXXXXXXXXXXXGTSTVAAATASSRQRRNVARVNYAEDKEXXXXXXXXXXXXXXAVSAQGRARGGRGGHQARQGPLRLKEELRRGGGKDEEGLAVEVRAFRGRVRSVIQSFSGEEFALHFREPVDLNLYPSYVYAVKEPMDLSTILFNLRGGEYDVPKTGHDLLLRHIDLIPSNCTIFNGKDAKITQNARLVARTILGGLSE 615
            MEALLLLE C+D KWLKPWY   Q+KM S  +LLRLSTPAAVAL LF+LDRAILYDKV+T A RG+RLRNG QLRGR+ AS    GD  A   L                             + RG   R  +            PPRRGR    +++ +   SRDLSPGSWEE  XXXXXXXXXXXXXXXXXXXXX                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G GV++                                        D   PTTW CPTCTVDNEL + KC +C +RRPA+A+P G                                                              XXXXXXXXXXXXXXXXXX            RQRR VARVNYAED +     XXXXXXXXX     G A+  +     R  PL LK+ELRRG   +E  L  +VR FR  VRS ++  S E + LHFR+ VDL  YP Y   VKEPMDL+ ILF LR GEYD  + G  LLLR I+LIP NC  FNGK  +I+QNA  +AR ++G L +
Sbjct: 2762 MEALLLLELCLDQKWLKPWYRPAQQKMQSAWHLLRLSTPAAVALRLFALDRAILYDKVATRAQRGSRLRNGIQLRGRSSASSRGGGDTKAARALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRGDDGRNRK------------PPRRGR---PAKKTSGGGSRDLSPGSWEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESGDGVDD----------------------------------------DALAPTTWSCPTCTVDNELADDKCVVCSKRRPAAALPRGX-------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXGRDRQRRGVARVNYAEDNDVDSDEXXXXXXXXXXXXXXG-AKKSKVVRMGRNAPLPLKDELRRGVA-EEVVLLCDVREFRRVVRSAVKRSSKEAYTLHFRDAVDLVAYPQYTDIVKEPMDLARILFKLRQGEYD-SQEGRKLLLRDINLIPQNCETFNGKGVQISQNAHQLARDLIGRLDD 3253          
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: D8LI13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI13_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 6.030e-54
Identity = 291/623 (46.71%), Postives = 335/623 (53.77%), Query Frame = 0
Query:    1 MEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLDRAILYDKVSTAAHRGARLRNGTQLRGRTGASGNDDGDADAKDFLGANLRRSRTSAQASVLAASNTLS------KPRGRQSRTSRAAEAGGSWAAISPPRRGRRSSVSREPAKAYSRDLSPGSWEEDDXXXXXXXXXXXXXXXXXXXXXSGRTRKARGVRRGRGRSVPEESDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDSGGMGVEEAEAQEXXXXXXXXXXXXXXXMKRKAAAMAGATAAAPVPAVDVDV--PTTWDCPTCTVDNELTNTKCHLCGERRPASAIPGGARKRRRQLTARLGTDHGGGSXXXXXXXXXXXXXXXXGGDVSAGSSRPRGSGRRGARXXXXXXXXXXXXXXXXXXXXXXXXGTSTVAAATASSRQRRNVARVNYAEDKEXXXXXXXXXXXXXXAVSAQGRARGGRGGHQARQGPLRLKEELRRGGGKDEEGLAVEVRAFRGRVRSVIQSFSGEEFALHFREPVDLNLYPSYVYAVKEPMDLSTILFNLRGGEYDVPKTGHDLLLRHIDLIPSNCTIFNGKDAKITQNARLVARTILGGLSE 615
            MEALLLLE C+D KWLKPWY   Q+KM S  +LLRLSTPAAVAL LF+LDRAILYDKV+T A RG+RLRNG QLRGR+ AS    GD  A   +                             + RG   R+ +            PPRRGR    +++ +   SRDLSPGSWE   XXXXXXXXXXXXXXXXXXXXX                        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          AE+                                 V  VD D   PTTW CP CTVDN+L + KC +C +RRPA+A+P G+R                                                      XXXXXXXXXXXXXXXXXXXXXXXX      ++    RQRR VARVNYAED +     XXXXXXXXX       A+  +     R  P+ LK+ELRRG   +EE L  +VR FR  VRS ++ FS E F LHFR+ VDL  YP Y   VKEPMDL+ ILF LR GEYD  + G  LLLR I+LIP NC  FNGK  +I+QNA  +AR ++  L +
Sbjct: 2314 MEALLLLELCLDQKWLKPWYRPAQQKMQSAWHLLRLSTPAAVALRLFALDRAILYDKVATRAQRGSRLRNGIQLRGRSSASSRGGGDTKAARAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGRGDDGRSRK------------PPRRGR---PAKKTSGGGSRDLSPGSWEXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAES---------------------------------VDGVDDDALAPTTWSCPICTVDNDLADDKCVVCSQRRPAAALPRGSRXXXXXXXXXXXXXX---------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLSSGGRDRQRRGVARVNYAEDNDVDSDEXXXXXXXXXXXXXXX-AKKSKVVRSGRNAPVPLKDELRRGVA-EEEVLPGDVREFRRVVRSAVKGFSKEAFTLHFRDAVDLVAYPQYTDIVKEPMDLARILFKLRQGEYD-SQEGRKLLLRDINLIPENCETFNGKGVQISQNAHQLARDLIDRLDD 2837          
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Match: A0A4D9D954_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D954_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.210e-8
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 0
Query:    1 MEALLLLESCIDPKWLKPWYLTVQEKMPSTS-YLLRL-STPAAVALHLFSLDRAILYDK 57
            ME LLLLESC+ P+WLKPW+  ++    +TS +LLRL +T AA A HLF LD+AILYDK
Sbjct: 1896 MEGLLLLESCLHPEWLKPWFHPLRRSYAATSSHLLRLGTTAAAAAFHLFILDKAILYDK 1954          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16392.4040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQ21_9PHAE5.480e-5646.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI13_ECTSI6.030e-5446.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9D954_9STRA3.210e-861.02Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 580..599
score: 26.2
coord: 528..541
score: 33.7
coord: 542..558
score: 46.42
IPR001487BromodomainSMARTSM00297bromo_6coord: 38..618
e-value: 2.6E-9
score: 46.9
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 520..603
e-value: 2.8E-10
score: 40.1
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 525..599
score: 14.21
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 640..691
e-value: 0.0087
score: 25.3
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 500..622
e-value: 1.2E-16
score: 62.6
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 510..614
NoneNo IPR availableGENE3D2.20.28.140coord: 307..361
e-value: 9.4E-8
score: 33.7
IPR040240Transcription initiation factor TFIID subunit 1PANTHERPTHR13900TRANSCRIPTION INITIATION FACTOR TFIIDcoord: 532..621
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 641..690
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 314..333
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 310..339
score: 9.145
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 638..693
score: 8.556
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 639..690

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16392contigH-elongata_contig16392:1613..4654 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16392.4040.1mRNA_H-elongata_contig16392.4040.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig16392 246..5936 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig16392.4040.1 ID=prot_H-elongata_contig16392.4040.1|Name=mRNA_H-elongata_contig16392.4040.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=695bp
MEALLLLESCIDPKWLKPWYLTVQEKMPSTSYLLRLSTPAAVALHLFSLD
RAILYDKVSTAAHRGARLRNGTQLRGRTGASGNDDGDADAKDFLGANLRR
SRTSAQASVLAASNTLSKPRGRQSRTSRAAEAGGSWAAISPPRRGRRSSV
SREPAKAYSRDLSPGSWEEDDDDGDNDDEDSEDWEPKRRRRGSGRTRKAR
GVRRGRGRSVPEESDDGEENEEDDDEEDDDEEEGDDDEENGEDDDDEEDN
GNDDGGTDSGGMGVEEAEAQETGESDDSDEGDQGKQMKRKAAAMAGATAA
APVPAVDVDVPTTWDCPTCTVDNELTNTKCHLCGERRPASAIPGGARKRR
RQLTARLGTDHGGGSGSGGGSSGAENDSAASGGDVSAGSSRPRGSGRRGA
RGGGARGGARGGARGGARSRGRGRGGTSTVAAATASSRQRRNVARVNYAE
DKEDDDDDGDDDGGVGGAVSAQGRARGGRGGHQARQGPLRLKEELRRGGG
KDEEGLAVEVRAFRGRVRSVIQSFSGEEFALHFREPVDLNLYPSYVYAVK
EPMDLSTILFNLRGGEYDVPKTGHDLLLRHIDLIPSNCTIFNGKDAKITQ
NARLVARTILGGLSEDEPDVAEAVGLGGSFSSFGGGAASVCSACGVSLEG
DDGSLALVSCEACKAVHHAICVLDGSGGESEESSWRCVACGGEN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR001965Znf_PHD
IPR036427Bromodomain-like_sf
IPR040240TAF1
IPR019786Zinc_finger_PHD-type_CS
IPR001876Znf_RanBP2
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD