mRNA_H-elongata_contig163837.4037.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163837.4037.1
Unique NamemRNA_H-elongata_contig163837.4037.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163837.4037.1 vs. uniprot
Match: A0A6H5KCA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCA0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.480e-17
Identity = 52/96 (54.17%), Postives = 69/96 (71.88%), Query Frame = 1 
Query:   13 QVLVQGNKALMNARINVAEREDNRTQRELQELSERLASDGRDALANLRRELEHEAELRLESERTRLQEQMAEALRREHDRLAMERDLRIANARSTA 300
            Q   + NKAL+ AR  +AERE  RT+RELQ+LSERL +DGRDALA+ RR+LE E E RL  ER  L+E +A AL++E +RL  ER L++ +AR  +
Sbjct:   57 QESAEENKALLEARARLAEREGARTKRELQDLSERLTNDGRDALASFRRDLEAEEEKRLAEERGNLKEALARALQQERERLVTERKLKVFDARDAS 152
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BLAST of mRNA_H-elongata_contig163837.4037.1 vs. uniprot
Match: D7FK94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK94_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.830e-13
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:    1 RDGKQVLVQGNKALMNARINVAEREDNRTQRELQELSERLASDGRDALANLRRELEHEAELRLESERTRLQEQMAEAL 234
            ++  +VL Q NKAL+ AR  +AERE  RT+RELQ+LSERL +DGRDALA+LRRELE E E RL  ER  L+E +A  L
Sbjct:  427 QESAEVLEQENKALLEARARLAEREGARTKRELQDLSERLTNDGRDALASLRRELEVEEEKRLAEERGNLKEALAHDL 504
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163837.4037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCA0_9PHAE2.480e-1754.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK94_ECTSI1.830e-1360.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163837contigH-elongata_contig163837:64..1116 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size309
Cds size309
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163837.4037.1prot_H-elongata_contig163837.4037.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163837 64..1116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.2879438-CDS-H-elongata_contig163837:63..1551622929958.2879438-CDS-H-elongata_contig163837:63..155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163837 64..155 +
1691679223.5357065-CDS-H-elongata_contig163837:63..1551691679223.5357065-CDS-H-elongata_contig163837:63..155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163837 64..155 +
1622929958.298725-CDS-H-elongata_contig163837:558..6921622929958.298725-CDS-H-elongata_contig163837:558..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163837 559..692 +
1691679223.5455096-CDS-H-elongata_contig163837:558..6921691679223.5455096-CDS-H-elongata_contig163837:558..692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163837 559..692 +
1622929958.3148472-CDS-H-elongata_contig163837:1033..11161622929958.3148472-CDS-H-elongata_contig163837:1033..1116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163837 1034..1116 +
1691679223.565161-CDS-H-elongata_contig163837:1033..11161691679223.565161-CDS-H-elongata_contig163837:1033..1116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163837 1034..1116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163837.4037.1

>prot_H-elongata_contig163837.4037.1 ID=prot_H-elongata_contig163837.4037.1|Name=mRNA_H-elongata_contig163837.4037.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
RDGKQVLVQGNKALMNARINVAEREDNRTQRELQELSERLASDGRDALAN
LRRELEHEAELRLESERTRLQEQMAEALRREHDRLAMERDLRIANARSTA
RY*
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mRNA from alignment at H-elongata_contig163837:64..1116+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163837.4037.1 ID=mRNA_H-elongata_contig163837.4037.1|Name=mRNA_H-elongata_contig163837.4037.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1053bp|location=Sequence derived from alignment at H-elongata_contig163837:64..1116+ (Himanthalia elongata Himel1 dioecious)
CGCGATGGTAAACAGGTTTTAGTTCAGGGAAACAAGGCCCTCATGAACGC
GAGGATCAACGTCGCGGAGAGAGAAGACAATAGAACGCAACGGTAAGCGG
GTGTTGGAGTGGACCGAACCCGACCGGACCAGACCTTCCCCGTTAATGCG
GATACAGTCGCGAACGATCGGGCGTAAATAAAGAGAGACAAACAGACAGA
CGAAAATAGACGGTCGATCATGCACAGACAGCAGTGGTTTCGAGTTGTGG
TGGTTTTGGCTCCAGTCAAGCATGGGCAAGAAGAAAAAAACGCTGAGTAG
TTGTGGTGGTCCGTATGGGCGCGTCTTTTGTGCTTTTTTTGCGGGGGTGT
TTTTGCAGCTTTTGTTAGTTTTTTCTGTGCTGTAGTTTGTGTGTGTGTGT
GCGTGCATTTATTTTTGCTTTTTTGAACGAGTACTCTGGCGCTTCTCTTC
GTCTCACCTCTCCCTCCTCCCTATCTTAACATGCTCGGCCGACAGCGAAC
TCCAAGAGCTAAGCGAGCGCCTCGCCAGCGACGGCCGCGACGCCTTGGCC
AACCTACGGCGTGAACTTGAACACGAGGCAGAACTACGCTTGGAGTCGGA
GCGGACACGTCTCCAAGAGCAAATGGCTGGTGAGAGGACTCTTGATCTTT
GATCCTTGATGTTGATGTTGATCCTTGGCGCACGTTCTCATGGGTACAGG
AAGGAAAGAAAGCGCGTGTGCTCCCCCGTCTTGCGCGCGCAACCCAGCCC
GCCCGCCTCCCCTCCGCCTCTAGCCTAGGTCTTGCTTACGATGAGTCATC
TCATCTCGCGTGTTTTTCTCAGTTTGTCCTTGTGGATCACCGTCCGGGGC
TGACATCCCCCCGATACCGCATTGGTTTAAACTGCACGCCACCGATGCCG
CCGCCGCTCGCTTTTTTTATTTTTTTATATATATATATATGTATGTACCC
TGATTTGAGTCGATGTATAGAGGCTCTTCGTCGGGAGCACGATCGGCTGG
CGATGGAGAGAGACCTCAGGATCGCCAACGCTCGAAGCACTGCTCGGTAT
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig163837:64..1116+

>mRNA_H-elongata_contig163837.4037.1 ID=mRNA_H-elongata_contig163837.4037.1|Name=mRNA_H-elongata_contig163837.4037.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig163837:64..1116+ (Himanthalia elongata Himel1 dioecious)
CGCGATGGTAAACAGGTTTTAGTTCAGGGAAACAAGGCCCTCATGAACGC
GAGGATCAACGTCGCGGAGAGAGAAGACAATAGAACGCAACGCGCGATGG
TAAACAGGTTTTAGTTCAGGGAAACAAGGCCCTCATGAACGCGAGGATCA
ACGTCGCGGAGAGAGAAGACAATAGAACGCAACGCGAACTCCAAGAGCTA
AGCGAGCGCCTCGCCAGCGACGGCCGCGACGCCTTGGCCAACCTACGGCG
TGAACTTGAACACGAGGCAGAACTACGCTTGGAGTCGGAGCGGACACGTC
TCCAAGAGCAAATGGCTGCGAACTCCAAGAGCTAAGCGAGCGCCTCGCCA
GCGACGGCCGCGACGCCTTGGCCAACCTACGGCGTGAACTTGAACACGAG
GCAGAACTACGCTTGGAGTCGGAGCGGACACGTCTCCAAGAGCAAATGGC
TGAGGCTCTTCGTCGGGAGCACGATCGGCTGGCGATGGAGAGAGACCTCA
GGATCGCCAACGCTCGAAGCACTGCTCGGTATTGAAGGCTCTTCGTCGGG
AGCACGATCGGCTGGCGATGGAGAGAGACCTCAGGATCGCCAACGCTCGA
AGCACTGCTCGGTATTGA
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