mRNA_H-elongata_contig162899.3992.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162899.3992.1
Unique NamemRNA_H-elongata_contig162899.3992.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig162899.3992.1 vs. uniprot
Match: D7G7L2_ECTSI (G-patch_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L2_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.760e-19
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   70 GVLPSADTRWLRANIRVRVVHKSYAGGRAYLGKGRVVDVPRVGEATVRMDLEDRVLEG 243
            G   S    WLRANIRVRV+HKSY GGRAYLGKGRVVDVPR G+ATVRMDL + VLEG
Sbjct:  538 GGQQSGPPAWLRANIRVRVIHKSYGGGRAYLGKGRVVDVPRAGQATVRMDLGELVLEG 595
[Close]
BLAST of mRNA_H-elongata_contig162899.3992.1 vs. uniprot
Match: A0A7S0D295_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D295_MICPS)

HSP 1 Score: 51.6 bits (122), Expect = 1.070e-5
Identity = 34/75 (45.33%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:   31 SGRNRSDESGRGGGVLPSADTR----WLRANIRVRVVHKSYAGGRAYLGKGRVVDVPRVGEATVRMDLEDRVLEG 243
            SG NR D  G G G     + R    WL+ N RVR+V KS+ GGR YL KG VVDV    E  V ++    VL G
Sbjct:  125 SGENR-DAGGAGAGEKRKREKRVEPAWLQGNTRVRIVSKSFEGGRLYLKKGVVVDVLTPRECVVEINDSGEVLSG 198
[Close]
BLAST of mRNA_H-elongata_contig162899.3992.1 vs. uniprot
Match: A0A4Y7JJF7_PAPSO (G-patch domain-containing protein (Fragment) n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JJF7_PAPSO)

HSP 1 Score: 51.6 bits (122), Expect = 1.220e-5
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:   67 GGVLPSADTRWLRANIRVRVVHKSYAGGRAYLGKGRVVDVPRVGEATVRMDLEDRVLEG 243
            GG +   D  WL ++IRVRVV K++ GG+ Y+ KG +VDV       + MD    V++G
Sbjct:  196 GGKVKGDDPSWLISHIRVRVVSKTFRGGKLYMKKGEIVDVVERSVCDIAMDESKEVIQG 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162899.3992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G7L2_ECTSI2.760e-1975.86G-patch_2 domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S0D295_MICPS1.070e-545.33Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A4Y7JJF7_PAPSO1.220e-540.68G-patch domain-containing protein (Fragment) n=2 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162899contigH-elongata_contig162899:288..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog2880.D7G7L2
Preferred nameGPKOW
KEGG rclassRC00010
KEGG koko:K10798,ko:K13101,ko:K13566
KEGG ReactionR00269,R00348
KEGG Pathwayko00250,ko03410,ko04210,ko04212,ko04214,ko04217,map00250,map03410,map04210,map04212,map04214,map04217
KEGG ModuleM00296
GOsGO:0000375,GO:0000377,GO:0000398,GO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009607,GO:0009617,GO:0009870,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0023052,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051716,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097159,GO:0098542,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.defense response signaling pathway, resistance gene-dependent
EggNOG OGsKOG4315@1,KOG4315@2759
EC2.4.2.30,3.5.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.9352562-CDS-H-elongata_contig162899:287..5481622929952.9352562-CDS-H-elongata_contig162899:287..548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162899 288..548 -
1691679221.2818315-CDS-H-elongata_contig162899:287..5481691679221.2818315-CDS-H-elongata_contig162899:287..548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162899 288..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162899.3992.1prot_H-elongata_contig162899.3992.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162899 288..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162899.3992.1

>prot_H-elongata_contig162899.3992.1 ID=prot_H-elongata_contig162899.3992.1|Name=mRNA_H-elongata_contig162899.3992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
ERLRDRFDQSSGRNRSDESGRGGGVLPSADTRWLRANIRVRVVHKSYAGG
RAYLGKGRVVDVPRVGEATVRMDLEDRVLEGESRLL*
back to top

mRNA from alignment at H-elongata_contig162899:288..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162899.3992.1 ID=mRNA_H-elongata_contig162899.3992.1|Name=mRNA_H-elongata_contig162899.3992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig162899:288..548- (Himanthalia elongata Himel1 dioecious)
GAACGCCTACGCGATCGATTCGACCAGAGTAGCGGGCGGAATCGGTCTGA
CGAGAGCGGCCGAGGAGGAGGGGTGTTGCCGTCCGCAGATACAAGGTGGC
TGAGAGCCAATATTCGCGTGCGCGTGGTGCATAAGTCGTACGCAGGCGGG
CGAGCGTACCTGGGGAAGGGCAGAGTGGTGGACGTCCCTAGAGTGGGAGA
GGCTACGGTTCGGATGGATCTCGAGGACCGCGTGCTGGAAGGCGAGTCCC
GCTTGCTGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig162899:288..548-

>mRNA_H-elongata_contig162899.3992.1 ID=mRNA_H-elongata_contig162899.3992.1|Name=mRNA_H-elongata_contig162899.3992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig162899:288..548- (Himanthalia elongata Himel1 dioecious)
GAACGCCTACGCGATCGATTCGACCAGAGTAGCGGGCGGAATCGGTCTGA
CGAGAGCGGCCGAGGAGGAGGGGTGTTGCCGTCCGCAGATACAAGGTGGC
TGAGAGCCAATATTCGCGTGCGCGTGGTGCATAAGTCGTACGCAGGCGGG
CGAGCGTACCTGGGGAAGGGCAGAGTGGTGGACGTCCCTAGAGTGGGAGA
GGCTACGGTTCGGATGGATCTCGAGGACCGCGTGCTGGAAGGCGAGTCCC
GCTTGCTGTAGGAACGCCTACGCGATCGATTCGACCAGAGTAGCGGGCGG
AATCGGTCTGACGAGAGCGGCCGAGGAGGAGGGGTGTTGCCGTCCGCAGA
TACAAGGTGGCTGAGAGCCAATATTCGCGTGCGCGTGGTGCATAAGTCGT
ACGCAGGCGGGCGAGCGTACCTGGGGAAGGGCAGAGTGGTGGACGTCCCT
AGAGTGGGAGAGGCTACGGTTCGGATGGATCTCGAGGACCGCGTGCTGGA
AGGCGAGTCCCGCTTGCTGTAG
back to top