mRNA_H-elongata_contig16265.3974.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16265.3974.1
Unique NamemRNA_H-elongata_contig16265.3974.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Match: A0A6H5L976_9PHAE (ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L976_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 4.910e-95
Identity = 193/419 (46.06%), Postives = 250/419 (59.67%), Query Frame = 1
Query:    1 LRMMVLATAGMGKSWLVNAVSHMLGSRIRCAAPTGNTAFLIDGSTLHSLLKLPTRAGQPLQGESPKKLQVPLDGLEYLVTNELSMVSQAQLA*VDRILRQATGNTEELFGGSFVVVTEDPGQLPPVGGMTLHVALPKDQLSQEGFNAYRSFRKVIILDK--------DGHDDKKAFLELLPHVRNGLLTEGD*RLLLTRAPHAKAEEPRKHFNGATRLFYSRVEVKDYNCNILRVVGTPVLK-------------------GLQRKVCIARDARVMLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPACMQDSQERQA----------------------LALCLGITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCAKHLVDLLVEPVSFDRLSKLGEN 1110
            LRMMVL TAG GKS+LV A+S +LG  +R AAPTG  AFLI GSTLHSLL+LP R G+ LQG+S K LQ  L G++Y++ +ELSMVSQ+Q+A VDR LRQ T   ++ FGG  +++T D GQL PVGG  L+   P   L+ EG+ AY  F+ V ILD+           DD++ F+ELLP  R+G L + D  LLL R P+      +  F  ATRLFYS+ EV  YN   LR +  PV +                   GL+R + +A+ A+VML++ L+ +VGLVNGIR E VELV A     P LP +++V+F  Y+        + R+                       L LC  ITMHKSQ QT+  AVIDL   EA +GLTFVC+S AK LVDL+VEP+SFDR+  LG +
Sbjct: 1141 LRMMVLGTAGTGKSYLVYALSRLLGGFLRRAAPTGMAAFLIAGSTLHSLLRLPVRQGRNLQGQSLKALQNSLTGVKYIIIDELSMVSQSQMAWVDRRLRQGTA-VDKPFGGISLIMTGDLGQLQPVGGTPLYKQNPAAALNVEGYAAYSLFQDVFILDRVQRQTAAAANDDDQRGFIELLPRARDGQLCDEDWDLLLKRQPNRLTAAEKAAFEDATRLFYSKKEVNKYNGKKLRELDNPVARVSAVHTGANARRATADTAEGLERDLYLAKGAKVMLSKNLYQQVGLVNGIRGEVVELVCADDAPPPKLPLYVVVKFEGYSGGEWSSQERYRRCVPISPVDTTWQDGGTQVRTQLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNS 1558          
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Match: UPI000A2A6B3A (uncharacterized protein LOC110247455 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A6B3A)

HSP 1 Score: 239 bits (610), Expect = 5.060e-69
Identity = 149/412 (36.17%), Postives = 224/412 (54.37%), Query Frame = 1
Query:    7 MMVLATAGMGKSWLVNAVSHMLGSRIRCAAPTGNTAFLIDGSTLHSLLKLPT--RAGQPLQGESPKKLQVPLDGLEYLVTNELSMVSQAQLA*VDRILRQATGNTEELFGGSFVVVTEDPGQLPPVGGMTLHVALPKDQLSQEGFNAYRSFRKVIILDKD-----GHDDKKAFLELLPHVRNGLLTEGD*RLLLTRAPHAKAEEPRKHFNGATRLFYSRVEVKDYNCNILRVVGTPV-------------------LKGLQRKVCIARDARVMLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPACMQDS-------------------QERQALALCLG--ITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCAKHLVDLLVEPVSFDRLSKL 1101
            ++++  AG GKS+L+NA+  +L ++    A TG  +F I G T+HSLLKLP   R  + L G++  +LQ  L+ +EY++ +E SM+ Q     +D+  +QATG  +++ GG  +++  DPGQLPPV    L+ A P + + ++G+  Y+ F KV+ L  +        +++ F ELL  +R G  T  D +LLLTR P     E    FN ATRLFYS  EV  YN + L  +  P                    + GLQ  + IA+ A+VMLT  LW+ VGL NG     V++++A   + P LP  ++VRF  Y  P+  +D                    QERQ L L L   +T+HKSQ  T+  A ID+ KSE T G+++V IS  K L  L++EP++F+RL+ +
Sbjct:  277 LIIIGVAGTGKSYLINALRSLLQNKCSVTATTGKASFNIQGITVHSLLKLPVGPRGAKDLSGQTLSRLQEKLNEIEYILIDEYSMLGQTTFGWIDKRCKQATGFHDKVHGGMSMILIGDPGQLPPVVDKPLYHAQPSNPIGEQGYLTYQMFDKVVKLTANQRVQGSSSEQQQFRELLLRLRKGESTVQDWKLLLTRQP--SCIENISEFNDATRLFYSNDEVSAYNLDQLTKLMEPCANINARHSSVTAKSLPSDEMSGLQPSISIAKGAKVMLTMNLWASVGLCNGATGTVVDIIYAVDHRPPDLPIAVIVRFDNYQGPSLREDLPMCVPICPITVSAQALEGVQERQQLPLKLAYALTIHKSQGLTLSKAWIDIGKSEKTPGISYVAISRVKTLSSLVIEPMTFERLTAI 686          
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Match: A0A6S7ISR5_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7ISR5_PARCT)

HSP 1 Score: 233 bits (594), Expect = 6.190e-65
Identity = 146/406 (35.96%), Postives = 220/406 (54.19%), Query Frame = 1
Query:   25 AGMGKSWLVNAVSHMLGSRIRCAAPTGNTAFLIDGSTLHSLLKLP--TRAGQPLQGESPKKLQVPLDGLEYLVTNELSMVSQAQLA*VDRILRQATGNTEELFGGSFVVVTEDPGQLPPVGGMTLHVALPKDQLSQEGFNAYRSFRKVIILDKDGH-----DDKKAFLELLPHVRNGLLTEGD*RLLLTRAPHAKAEEPRKHFNGATRLFYSRVEVKDYNCNILRVVGTPV-------------------LKGLQRKVCIARDARVMLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPACMQDS-------------------QERQALALCLG--ITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCAKHLVDLLVEPVSFDRLSKL 1101
            AG GKS+L+NA+ ++L S+   AA TG  AF I G T+HSLLKLP  +R  + L G+S  +LQ  +D + Y++ +E SM+ Q     +D+  +QATG+ +++FGG  +++T DPGQLPPV    L+ A P + + ++G  AY  F KV+ L  +        ++  F +LL  +R G  T  D +LLLTR P   +      F  +TRLFYS  +V +YN   L  +  P+                   + GL+  V +A+ ARVMLT  LWS VGL NG     V++++  + + P LP  ++V F  Y  P   ++                     ERQ L L L   +T+HKSQ  T+  A ID+ KSE T+G+++V IS  K L   ++EP++++RL+ L
Sbjct:  691 AGTGKSYLINAIRNLLQSKCAVAATTGKAAFNIRGVTVHSLLKLPIGSRGNKDLTGQSLCRLQESVDNIGYIIIDEYSMLGQVTFGWIDKRCKQATGSNDKVFGGKSLILTGDPGQLPPVADKPLYHARPSNAVGEQGHQAYHMFDKVVKLTVNQRVQGMTSEQVQFRDLLLRLRKGDSTVADWKLLLTRQPSNVSNLC--DFEDSTRLFYSNEQVGNYNHEQLTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPLGIPIYPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSL 1094          
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Match: A0A6S7JIW3_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JIW3_PARCT)

HSP 1 Score: 232 bits (592), Expect = 1.110e-64
Identity = 145/411 (35.28%), Postives = 222/411 (54.01%), Query Frame = 1
Query:    7 MMVLATAGMGKSWLVNAVSHMLGSRIRCAAPTGNTAFLIDGSTLHSLLKLPT--RAGQPLQGESPKKLQVPLDGLEYLVTNELSMVSQAQLA*VDRILRQATGNTEELFGGSFVVVTEDPGQLPPVGGMTLHVALPKDQLSQEGFNAYRSFRKVIILD-----KDGHDDKKAFLELLPHVRNGLLTEGD*RLLLTRAPHAKAEEPRKHFNGATRLFYSRVEVKDYNCNILRVVGTPVLK-------------------GLQRKVCIARDARVMLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPA------CM------------QDSQERQALALCLG--ITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCAKHLVDLLVEPVSFDRLSKL 1101
            ++++   G GKS+L+NAV + L  +    A TG  +F I+G T+HS LKLP    + + L G+S   LQ  L  ++Y+V +E SM+ Q  +  +D+  RQATG  ++LFGG  +++  DP QLPPVG   L+ + P + ++++G  AY+ F  V+ILD     +    D+  F  +L  +R G L+  D +LLL R P   +      F  ATRL+YS  EV  +N + L  + TP+ +                   GLQ  + I + A+VMLT  LW+ VGL NG     V++++A     P LP  +LV+F  Y  P       C+              + ERQ L L L   +T+HKSQ  T+E A +D+ K E T G+T+V +S A++L  L++EP+++DRLS +
Sbjct:  684 LVIIGEGGTGKSFLINAVRNYLKEKCIVTATTGKASFNINGITIHSFLKLPVGKMSQKDLSGQSLDNLQKNLLSVDYIVIDEYSMLGQTTMGWIDKRCRQATGLKDKLFGGKSIILIGDPAQLPPVGDKPLYHSKPSNPIAEQGSLAYKMFNNVVILDVNQRIRGSQHDQTLFKGILSRLRIGELSCNDWKLLLARQPTVLSNL--NDFIDATRLYYSNDEVAKFNYDHLMQLETPIAEICARHSGSNAKSVSAQEMFGLQPTILICKGAKVMLTMNLWASVGLCNGASGTIVDIIYAKDHHPPDLPIAVLVKFDEYRGPNFCSIPFCVPIPPVTASVNIDNKTLERQQLPLTLAWALTIHKSQGMTLEKAWVDIGKKECTLGITYVALSRARNLTSLVIEPMTYDRLSSI 1092          
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Match: A0A7D9JFR3_PARCT (ATP-dependent DNA helicase n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JFR3_PARCT)

HSP 1 Score: 227 bits (579), Expect = 1.880e-64
Identity = 144/406 (35.47%), Postives = 217/406 (53.45%), Query Frame = 1
Query:   25 AGMGKSWLVNAVSHMLGSRIRCAAPTGNTAFLIDGSTLHSLLKLP--TRAGQPLQGESPKKLQVPLDGLEYLVTNELSMVSQAQLA*VDRILRQATGNTEELFGGSFVVVTEDPGQLPPVGGMTLHVALPKDQLSQEGFNAYRSFRKVIILDKDGH-----DDKKAFLELLPHVRNGLLTEGD*RLLLTRAPHAKAEEPRKHFNGATRLFYSRVEVKDYNCNILRVVGTPV-------------------LKGLQRKVCIARDARVMLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPACMQDS-------------------QERQALALCLG--ITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCAKHLVDLLVEPVSFDRLSKL 1101
            AG GKS+L+NA+ ++L S+   AA TG  A+ I G T+HSLLKLP   R  + L G+S  +LQ  ++ + Y++ +E SM+ Q     +D+  +QATG+ +++FGG  +++T DPGQLPPV    L+ A P + + ++G  AY  F KV+ L  +        ++  F +LL  +R G  T  D +LLLTR P          F  +TRLFYS  +V +YN   L  +  P+                   + GL+  V +A+ ARVMLT  LWS VGL NG     V++++  + + P LP  ++V F  Y  P   +                      ERQ L L L   +T+HKSQ  T+  A ID+ KSE T+G+++V IS  K L   ++EP++++RL+ L
Sbjct:  293 AGTGKSYLINAIRNLLQSKCAVAATTGKAAYNIRGVTVHSLLKLPIGARGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGSNDKVFGGKSLILTGDPGQLPPVADKPLYHARPSNAVGEQGHQAYHMFDKVVKLTVNQRVQGMTSEQVQFRDLLLRLRKGDSTVDDWKLLLTRQPSNVTNLC--DFEDSTRLFYSNEQVGNYNHEQLTKLEHPIAHINARHSSALAKRISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQYNHQPPDLPIAVIVEFENYRGPVFNESRPLCIPIYPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSL 696          
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Match: A0A6S7G8V4_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G8V4_PARCT)

HSP 1 Score: 229 bits (583), Expect = 2.020e-64
Identity = 145/406 (35.71%), Postives = 218/406 (53.69%), Query Frame = 1
Query:   25 AGMGKSWLVNAVSHMLGSRIRCAAPTGNTAFLIDGSTLHSLLKLP--TRAGQPLQGESPKKLQVPLDGLEYLVTNELSMVSQAQLA*VDRILRQATGNTEELFGGSFVVVTEDPGQLPPVGGMTLHVALPKDQLSQEGFNAYRSFRKVIILDKDGH-----DDKKAFLELLPHVRNGLLTEGD*RLLLTRAPHAKAEEPRKHFNGATRLFYSRVEVKDYNCNILRVVGTPV-------------------LKGLQRKVCIARDARVMLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPACMQDS-------------------QERQALALCLG--ITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCAKHLVDLLVEPVSFDRLSKL 1101
            AG GKS+L+NA+ ++L S+   AA TG  AF I G T+HSLLKLP  +R  + L G+S  +LQ  ++ + Y++ +E SM+ Q     +D+  +QATG  +++FGG  +++T DPGQLPPV    L+ A P + + ++G  AY  F KV+ L  +        ++  F +LL  +R G  T  D +LLLTR P          F  +TRLFYS  +V +YN   L  +  P+                   + GL+  V +A+ ARVMLT  LWS VGL NG     V++++  + + P LP  ++V F  Y  P   ++                     ERQ L L L   +T+HKSQ  T+  A ID+ KSE T+G+++V IS  K L   ++EP++++RL+ L
Sbjct:  393 AGTGKSYLINAIRNLLQSKCAVAATTGKAAFNIRGVTVHSLLKLPVGSRGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGCNDKVFGGKSLILTGDPGQLPPVADKPLYHARPSNAVGEQGHQAYHMFDKVVKLTVNQRVQGMTSEQVQFRDLLLRLRKGDSTVDDWKLLLTRQPSNVTNLC--DFEDSTRLFYSNEQVGNYNHEQLTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPLCIPICPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSL 796          
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Match: A0A6S7GPP1_PARCT (ATP-dependent DNA helicase n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GPP1_PARCT)

HSP 1 Score: 232 bits (591), Expect = 2.850e-64
Identity = 147/406 (36.21%), Postives = 219/406 (53.94%), Query Frame = 1
Query:   25 AGMGKSWLVNAVSHMLGSRIRCAAPTGNTAFLIDGSTLHSLLKLP--TRAGQPLQGESPKKLQVPLDGLEYLVTNELSMVSQAQLA*VDRILRQATGNTEELFGGSFVVVTEDPGQLPPVGGMTLHVALPKDQLSQEGFNAYRSFRKVIILDKDGH-----DDKKAFLELLPHVRNGLLTEGD*RLLLTRAPHAKAEEPRKHFNGATRLFYSRVEVKDYNCNILRVVGTPV-------------------LKGLQRKVCIARDARVMLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPACMQDS-------------------QERQALALCLG--ITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCAKHLVDLLVEPVSFDRLSKL 1101
            AG GKS+L+NA+ ++L ++    A TG  A+ I G T+HSLLKLP  +R  + L G+S  +LQ  L  + Y++ +E SM+ Q     +D+  +QATG  +++FG   +++T DPGQLPPV    L+ A P + + ++G  AYR F KVI L  +        D+  F +LL  +R G  T  D +LLLTR P + +      F+ ATRLFYS  +V +YN   L  +  P+                   + GL+  V +A+ ARVMLT  LWS VGL NG     V++V+  ++  P LP  ++V F  Y  P   ++                     ERQ L L L   +T+HKSQ  T+  A ID+ KSE T+G+++V IS  K L   ++EP++++RL+ L
Sbjct: 1206 AGTGKSYLINAIRNLLQNKCAVTATTGKAAYNIKGVTIHSLLKLPIGSRGAKDLTGQSLCRLQQNLKDINYIIIDEYSMLGQVTFGWIDKRCKQATGCHDKVFGEKSLILTGDPGQLPPVADKPLYHAKPSNAVGEQGHQAYRMFDKVIKLTVNQRVQGMTSDQVLFRDLLLRLRKGESTLDDWKLLLTRQPSSVSNL--SEFDDATRLFYSNEQVANYNHEQLTKLANPIAHINARHSSAVAKKMPSDEMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTIVDIVFQNNQNPPDLPIAVIVNFENYRGPHFSEERPMCVPICPITVSSQTEGGFHERQQLPLRLAWALTIHKSQGLTLSKAWIDVGKSERTAGVSYVAISRVKTLASCVIEPMTYERLTSL 1609          
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Match: A0A7D9LKR7_PARCT (ATP-dependent DNA helicase n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LKR7_PARCT)

HSP 1 Score: 225 bits (573), Expect = 1.390e-63
Identity = 143/406 (35.22%), Postives = 217/406 (53.45%), Query Frame = 1
Query:   25 AGMGKSWLVNAVSHMLGSRIRCAAPTGNTAFLIDGSTLHSLLKLP--TRAGQPLQGESPKKLQVPLDGLEYLVTNELSMVSQAQLA*VDRILRQATGNTEELFGGSFVVVTEDPGQLPPVGGMTLHVALPKDQLSQEGFNAYRSFRKVIILDKDGH-----DDKKAFLELLPHVRNGLLTEGD*RLLLTRAPHAKAEEPRKHFNGATRLFYSRVEVKDYNCNILRVVGTPV-------------------LKGLQRKVCIARDARVMLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPACMQDS-------------------QERQALALCLG--ITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCAKHLVDLLVEPVSFDRLSKL 1101
            AG GKS+L+NA+ ++L S+   AA TG  A+ I G T+HSLLKLP  +R  + L G+S  +LQ  ++ + Y++ +E SM+ Q     +D+  +QATG  +++FGG  +++T DPGQLPPV    L+ A P + + ++G  AY  F KV+ L  +        ++  F +LL  +  G  T  D +LLLTR P          F  +TRLFYS  +V +YN   L  +  P+                   + GL+  V +A+ ARVMLT  LWS VGL NG     V++++  + + P LP  ++V F  Y  P   ++                     ERQ L L L   +T+HKSQ  T+  A ID+ KSE T+G+++V IS  K L   ++EP++++RL+ L
Sbjct:  294 AGTGKSYLINAIRNLLQSKCAVAATTGKAAYNIRGVTVHSLLKLPIGSRGKKDLTGQSLCRLQESVNNIGYIIIDEYSMLDQVTFGWIDKRCKQATGYNDKVFGGKSLILTGDPGQLPPVADKPLYHAKPSNAVGEQGHQAYHMFDKVVKLTVNQRVQGMTSEQIQFRDLLLRLHKGDSTVDDWKLLLTRQPSNVTNLC--DFEDSTRLFYSNEQVGNYNHEQLTKLEHPIAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPLCIPICPITVASQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSL 697          
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Match: A0A6S7I8Z0_PARCT (ATP-dependent DNA helicase (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7I8Z0_PARCT)

HSP 1 Score: 229 bits (585), Expect = 1.700e-63
Identity = 146/406 (35.96%), Postives = 218/406 (53.69%), Query Frame = 1
Query:   25 AGMGKSWLVNAVSHMLGSRIRCAAPTGNTAFLIDGSTLHSLLKLP--TRAGQPLQGESPKKLQVPLDGLEYLVTNELSMVSQAQLA*VDRILRQATGNTEELFGGSFVVVTEDPGQLPPVGGMTLHVALPKDQLSQEGFNAYRSFRKVIILDKDGH-----DDKKAFLELLPHVRNGLLTEGD*RLLLTRAPHAKAEEPRKHFNGATRLFYSRVEVKDYNCNILRVVGTPV-------------------LKGLQRKVCIARDARVMLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPACMQDS-------------------QERQALALCLG--ITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCAKHLVDLLVEPVSFDRLSKL 1101
            AG GKS+L+NA+ ++L S+   AA TG  A+ I G T+HSLLKLP  +R  + L G+S  +LQ  ++ + Y++ +E SM+ Q     +D+  +QATG  +++FGG  +++T DPGQLPPV    L+ A P + + ++G  AY  F KV+ L  +        ++  F +LL  +R G  T  D +LLLTR P          F  +TRLFYS  +V +YN   L  +  PV                   + GL+  V +A+ ARVMLT  LWS VGL NG     V++++  + + P LP  ++V F  Y  P   ++                     ERQ L L L   IT+HKSQ  T+  A ID+ KSE T+G+++V IS  K L   ++EP++++RL+ L
Sbjct: 1139 AGTGKSYLINAIRNLLQSKCAVAATTGKAAYNIRGVTVHSLLKLPIGSRGNKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGYNDKVFGGKSLILTGDPGQLPPVADKPLYHARPSNAVGEQGHQAYHMFDKVVKLTVNQRVQGMTSEQVQFRDLLLRLRKGDSTVDDWKLLLTRQPSNVTNLC--DFEDSTRLFYSNEQVANYNHEQLTKLEHPVAHINARHSSALAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPLCIPIYPITVTSQTEIGFHERQQLPLRLAWAITIHKSQGLTLPKAWIDIGKSERTTGVSYVAISRVKSLASCVIEPMTYERLTSL 1542          
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Match: A0A7D9HMH4_PARCT (ATP-dependent DNA helicase n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HMH4_PARCT)

HSP 1 Score: 228 bits (582), Expect = 4.420e-63
Identity = 145/406 (35.71%), Postives = 218/406 (53.69%), Query Frame = 1
Query:   25 AGMGKSWLVNAVSHMLGSRIRCAAPTGNTAFLIDGSTLHSLLKLP--TRAGQPLQGESPKKLQVPLDGLEYLVTNELSMVSQAQLA*VDRILRQATGNTEELFGGSFVVVTEDPGQLPPVGGMTLHVALPKDQLSQEGFNAYRSFRKVIILDKDGH-----DDKKAFLELLPHVRNGLLTEGD*RLLLTRAPHAKAEEPRKHFNGATRLFYSRVEVKDYNCNILRVVGTPV-------------------LKGLQRKVCIARDARVMLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPACMQDS-------------------QERQALALCLG--ITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCAKHLVDLLVEPVSFDRLSKL 1101
            AG GKS+L+NA+ ++L S+   AA TG  A+ I G T+HSLLKLP  +R  + L G+S  +LQ  ++ + Y++ +E SM+ Q     +D+  +QATG  +++FGG  +++T DPGQLPPV    L+ A P + + ++G  AY  F KV+ L  +        ++  F +LL  +R G  T  D +LLLTR P          F  +TRLFYS  +V +YN   L  +  PV                   + GL+  V +A+ ARVMLT  LWS VGL NG     V++++  + + P LP  ++V F  Y  P   ++                     ERQ L L L   +T+HKSQ  T+  A ID+ KSE T+G+++V IS  K L   ++EP++++RL+ L
Sbjct: 1445 AGTGKSYLINAIRNLLQSKCAVAATTGKAAYNIRGVTVHSLLKLPIGSRGKKDLTGQSLCRLQESVNNIGYIIIDEYSMLGQVTFGWIDKRCKQATGYNDKVFGGKSLILTGDPGQLPPVADKPLYHARPSNAVGEQGHQAYHMFDKVVKLTVNQRVQGMTSEQVQFRDLLLRLRKGNSTVDDWKLLLTRQPSNVTNLC--DFEDSTRLFYSNEQVANYNHEQLTKLEHPVAHINARHSSAFAKKISSDDMSGLEPVVFLAKGARVMLTMNLWSSVGLCNGATGTVVDIIYQNNHQPPDLPIAVIVEFENYRGPVFNENQPLCIPIYPITVTSQTEIGFHERQQLPLRLAWALTIHKSQGLTLPKAWIDIGKSERTAGVSYVAISRVKSLASCVIEPMTYERLTSL 1848          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16265.3974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L976_9PHAE4.910e-9546.06ATP-dependent DNA helicase n=4 Tax=Ectocarpus sp. ... [more]
UPI000A2A6B3A5.060e-6936.17uncharacterized protein LOC110247455 n=1 Tax=Exaip... [more]
A0A6S7ISR5_PARCT6.190e-6535.96ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A6S7JIW3_PARCT1.110e-6435.28ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A7D9JFR3_PARCT1.880e-6435.47ATP-dependent DNA helicase n=2 Tax=Paramuricea cla... [more]
A0A6S7G8V4_PARCT2.020e-6435.71ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]
A0A6S7GPP1_PARCT2.850e-6436.21ATP-dependent DNA helicase n=3 Tax=Paramuricea cla... [more]
A0A7D9LKR7_PARCT1.390e-6335.22ATP-dependent DNA helicase n=2 Tax=Paramuricea cla... [more]
A0A6S7I8Z0_PARCT1.700e-6335.96ATP-dependent DNA helicase (Fragment) n=3 Tax=Para... [more]
A0A7D9HMH4_PARCT4.420e-6335.71ATP-dependent DNA helicase n=1 Tax=Paramuricea cla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16265contigH-elongata_contig16265:3719..4996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.0
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog400682.PAC_15726636
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGs3A1N8@33154,3BR8V@33208,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size1119
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16265.3974.1prot_H-elongata_contig16265.3974.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16265 4544..4996 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.3376446-UTR-H-elongata_contig16265:3718..41951622929951.3376446-UTR-H-elongata_contig16265:3718..4195Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16265 3719..4195 +
1691679220.6189408-UTR-H-elongata_contig16265:3718..41951691679220.6189408-UTR-H-elongata_contig16265:3718..4195Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16265 3719..4195 +
1622929951.354817-UTR-H-elongata_contig16265:4219..44441622929951.354817-UTR-H-elongata_contig16265:4219..4444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16265 4220..4444 +
1691679220.6277614-UTR-H-elongata_contig16265:4219..44441691679220.6277614-UTR-H-elongata_contig16265:4219..4444Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16265 4220..4444 +
1622929951.426395-UTR-H-elongata_contig16265:4501..45431622929951.426395-UTR-H-elongata_contig16265:4501..4543Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16265 4502..4543 +
1691679220.6356783-UTR-H-elongata_contig16265:4501..45431691679220.6356783-UTR-H-elongata_contig16265:4501..4543Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16265 4502..4543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929951.4409583-CDS-H-elongata_contig16265:4543..46921622929951.4409583-CDS-H-elongata_contig16265:4543..4692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16265 4544..4692 +
1691679220.6428487-CDS-H-elongata_contig16265:4543..46921691679220.6428487-CDS-H-elongata_contig16265:4543..4692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16265 4544..4692 +
1622929951.4595747-CDS-H-elongata_contig16265:4770..49961622929951.4595747-CDS-H-elongata_contig16265:4770..4996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16265 4771..4996 +
1691679220.6519718-CDS-H-elongata_contig16265:4770..49961691679220.6519718-CDS-H-elongata_contig16265:4770..4996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16265 4771..4996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16265.3974.1

>prot_H-elongata_contig16265.3974.1 ID=prot_H-elongata_contig16265.3974.1|Name=mRNA_H-elongata_contig16265.3974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MLTRKLWSEVGLVNGIREEAVELVWATSEKAPALPEFILVRFYWYADPAC
MQDSQERQALALCLGITMHKSQRQTVEMAVIDLEKSEATSGLTFVCISCA
KHLVDLLVEPVSFDRLSKLGENRL*
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mRNA from alignment at H-elongata_contig16265:3719..4996+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16265.3974.1 ID=mRNA_H-elongata_contig16265.3974.1|Name=mRNA_H-elongata_contig16265.3974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-elongata_contig16265:3719..4996+ (Himanthalia elongata Himel1 dioecious)
CTGCGCATGATGGTGCTAGCGACCGCAGGAATGGGCAAGTCTTGGCTGGT GAACGCAGTGTCGCACATGCTCGGAAGCAGGATCAGGTGTGCGGCGCCGA CTGGCAATACTGCATTCCTCATCGATGGCAGCACATTGCACAGCCTTCTA AAACTACCCACGAGGGCGGGTCAACCGTTGCAAGGTGAGTCACCCAAAAA GCTACAGGTGCCTCTTGACGGCCTCGAGTACCTCGTCACCAACGAGCTCA GTATGGTGAGCCAGGCGCAGCTTGCGTGAGTGGACCGCATATTGCGCCAA GCAACCGGCAACACAGAGGAGCTCTTCGGCGGGAGTTTCGTCGTCGTAAC GGAAGACCCGGGCCAACTGCCGCCCGTTGGTGGAATGACTCTTCATGTGG CGCTGCCCAAGGATCAGCTCAGCCAAGAGGGATTCAACGCGTATAGATCA TTCCGCAAAGTCATCATCCTCGACAAGGTGTAGCGTCAAACAGCCACCGA GGATGGACACGACGACAAGAAGGCGTTCCTCGAGCTTCTACCTCACGTGC GTAACGGCCTTCTTACGGAGGGCGATTGACGCCTACTCCTCACGCGCGCA CCTCACGCGAAGGCGGAAGAGCCAAGGAAACATTTCAATGGCGCTACACG CCTCTTCTACTCGAGGGTCGAAGTGAAAGACTACAACTGTAACATACTTC GAGTGGTCGGAACACCTGTGCTCAAGGTTATGGTGAACCACTTATCCGCG ACCGCTTGAAAAGTAACTGCGGACACCGCTTAGGGCCTACAACGTAAGGT ATGTATCGCACGAGACGCCAGAGTCATGCTGACGCGTAAACTATGGTCAG AGGTGGGACTGGTCAACGGAATTCGAGAGGAGGCGGTTGAACTTGTGTGG GCAACAAGCGAGAAGGCTCCCGCCCTACCGGAATTCATTCTCGTGCGATT TTACTGGTACGCGGACCCGGCGTGGTCCCACAACCCGCGATACACAGGGT GCGTGGCCATCGCCGCAATAGAGACGTTCTGAAGTTCCACGGAAGACGAC AGTATGCAGGACTCGCAAGAGCGACAAGCCCTAGCCCTGTGCTTGGGGAT TACCATGCACAAGAGTCAGAGACAAACGGTGGAGATGGCCGTCATCGACC TGGAGAAGTCCGAGGCCACCTCGGGATTGACATTCGTGTGCATCAGCTGC GCAAAACACCTGGTGGACTTGCTGGTCGAGCCCGTGTCTTTTGACAGGCT ATCCAAGCTCGGTGAAAATCGACTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig16265:3719..4996+

>mRNA_H-elongata_contig16265.3974.1 ID=mRNA_H-elongata_contig16265.3974.1|Name=mRNA_H-elongata_contig16265.3974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig16265:3719..4996+ (Himanthalia elongata Himel1 dioecious)
ATGCTGACGCGTAAACTATGGTCAGAGGTGGGACTGGTCAACGGAATTCG
AGAGGAGGCGGTTGAACTTGTGTGGGCAACAAGCGAGAAGGCTCCCGCCC
TACCGGAATTCATTCTCGTGCGATTTTACTGGTACGCGGACCCGGCGTGA
TGCTGACGCGTAAACTATGGTCAGAGGTGGGACTGGTCAACGGAATTCGA
GAGGAGGCGGTTGAACTTGTGTGGGCAACAAGCGAGAAGGCTCCCGCCCT
ACCGGAATTCATTCTCGTGCGATTTTACTGGTACGCGGACCCGGCGTGTA
TGCAGGACTCGCAAGAGCGACAAGCCCTAGCCCTGTGCTTGGGGATTACC
ATGCACAAGAGTCAGAGACAAACGGTGGAGATGGCCGTCATCGACCTGGA
GAAGTCCGAGGCCACCTCGGGATTGACATTCGTGTGCATCAGCTGCGCAA
AACACCTGGTGGACTTGCTGGTCGAGCCCGTGTCTTTTGACAGGCTATCC
AAGCTCGGTGAAAATCGACTTTAATATGCAGGACTCGCAAGAGCGACAAG
CCCTAGCCCTGTGCTTGGGGATTACCATGCACAAGAGTCAGAGACAAACG
GTGGAGATGGCCGTCATCGACCTGGAGAAGTCCGAGGCCACCTCGGGATT
GACATTCGTGTGCATCAGCTGCGCAAAACACCTGGTGGACTTGCTGGTCG
AGCCCGTGTCTTTTGACAGGCTATCCAAGCTCGGTGAAAATCGACTTTAA
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