mRNA_H-elongata_contig162256.3958.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162256.3958.1
Unique NamemRNA_H-elongata_contig162256.3958.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162256.3958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162256contigH-elongata_contig162256:169..878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size284
Cds size189
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162256.3958.1prot_H-elongata_contig162256.3958.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162256 169..785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.0266795-CDS-H-elongata_contig162256:168..2551622929950.0266795-CDS-H-elongata_contig162256:168..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162256 169..255 +
1691679220.0640297-CDS-H-elongata_contig162256:168..2551691679220.0640297-CDS-H-elongata_contig162256:168..255Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162256 169..255 +
1622929950.0417502-CDS-H-elongata_contig162256:683..7851622929950.0417502-CDS-H-elongata_contig162256:683..785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162256 684..785 +
1691679220.0715806-CDS-H-elongata_contig162256:683..7851691679220.0715806-CDS-H-elongata_contig162256:683..785Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162256 684..785 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929950.052246-UTR-H-elongata_contig162256:785..8781622929950.052246-UTR-H-elongata_contig162256:785..878Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162256 786..878 +
1691679220.0789647-UTR-H-elongata_contig162256:785..8781691679220.0789647-UTR-H-elongata_contig162256:785..878Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig162256 786..878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162256.3958.1

>prot_H-elongata_contig162256.3958.1 ID=prot_H-elongata_contig162256.3958.1|Name=mRNA_H-elongata_contig162256.3958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
VVRSVQKSLKLKASLYFTYLFNTRRFCNISFSETQRFSEDADILATLCIC
SSHPRLWDPTPR*
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mRNA from alignment at H-elongata_contig162256:169..878+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162256.3958.1 ID=mRNA_H-elongata_contig162256.3958.1|Name=mRNA_H-elongata_contig162256.3958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=710bp|location=Sequence derived from alignment at H-elongata_contig162256:169..878+ (Himanthalia elongata Himel1 dioecious)
GTTGTACGGTCTGTCCAAAAGTCGCTGAAGCTGAAGGCGAGTCTGTATTT
TACTTATCTCTTCAACACCCGAAGATTTTGTAACATTGTGAGTTCAAACG
CGATATCTACAGCAGTCTGGTTGACGATCGAGCGGTACAATAGCCGAAAG
TAGGATTTTATCATTTTATTGTGGCAGTAAGAGCTCTATGAGCGGAGCGA
CCCCACGCATGCCATACTTCATGCCGTGGGCTGAAACTTGGAGCCCATGT
CGGATATATGGATTCTTTCGAAGGCAGAAGATTTGAAGATTTATCACCTG
AGGCCGAGAATATAGTAGCACATATCAGTGATCATAGCGGCATGAACTCA
TTCTGAAACGAGAGTGTGTCTTTTTTCAAGGTATGAGGACGTTGGAAACG
ATTTGAACGATCCCAATACTGTACGTTAGATATATATTTATTTATAATAA
TAATAACTTTCCAATTTCTCCTGCTGCAATGCCACTTGGTACTCGTCGCT
ATGCCCAAATGTTAGTCCTTCAGCGAGACCCAAAGGTTCAGCGAGGACGC
GGATATCCTCGCGACCCTGTGCATTTGCTCCAGCCACCCACGGCTATGGG
ACCCGACACCGCGCTAGATCAGGTGATGCACGCCGTGTGGGGTAGTATCT
CGTTGTCGAATGCGGACATTAGCGGCATTATGTCGCGGGGCGCGGTCGCG
GTAAGGCATC
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Coding sequence (CDS) from alignment at H-elongata_contig162256:169..878+

>mRNA_H-elongata_contig162256.3958.1 ID=mRNA_H-elongata_contig162256.3958.1|Name=mRNA_H-elongata_contig162256.3958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig162256:169..878+ (Himanthalia elongata Himel1 dioecious)
GTTGTACGGTCTGTCCAAAAGTCGCTGAAGCTGAAGGCGAGTCTGTATTT
TACTTATCTCTTCAACACCCGAAGATTTTGTAACATTGTTGTACGGTCTG
TCCAAAAGTCGCTGAAGCTGAAGGCGAGTCTGTATTTTACTTATCTCTTC
AACACCCGAAGATTTTGTAACATTTCCTTCAGCGAGACCCAAAGGTTCAG
CGAGGACGCGGATATCCTCGCGACCCTGTGCATTTGCTCCAGCCACCCAC
GGCTATGGGACCCGACACCGCGCTAGTCCTTCAGCGAGACCCAAAGGTTC
AGCGAGGACGCGGATATCCTCGCGACCCTGTGCATTTGCTCCAGCCACCC
ACGGCTATGGGACCCGACACCGCGCTAG
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