mRNA_H-elongata_contig10038.40.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10038.40.1
Unique NamemRNA_H-elongata_contig10038.40.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: D7FIU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU6_ECTSI)

HSP 1 Score: 424 bits (1090), Expect = 2.650e-149
Identity = 208/238 (87.39%), Postives = 227/238 (95.38%), Query Frame = 1
Query:    1 LNRYVVSCQVFGKMQKSKKQADLDKAKYIKMLARMYPGLRIAHVDEADGAFYSVLSKNSGSG-DEMEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQVDDT 711
            + RYVVSCQVFGKMQKSKK+ADLDKA +IKMLAR+YPGLRIAHVDE  G FYSVLSKN+G+G D+MEEEYR+RLPG ILVGEGKPNNQNHA+IFTRGEA+QAIDMNQDA LEDAIKIRQVMEEF+FA+GGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLH+RFHYGHPD+FDR+S++TMGG+SKA KGIHLSEDIFAGFNYVLRGGE+TQADYIQV  T
Sbjct:    1 MGRYVVSCQVFGKMQKSKKKADLDKAAHIKMLARIYPGLRIAHVDEKYGEFYSVLSKNAGNGTDDMEEEYRVRLPGQILVGEGKPNNQNHAVIFTRGEAIQAIDMNQDAALEDAIKIRQVMEEFNFAEGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHVRFHYGHPDIFDRMSAITMGGVSKACKGIHLSEDIFAGFNYVLRGGEATQADYIQVMST 238          
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: D7FXN7_ECTSI (1,3-beta-glucan synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN7_ECTSI)

HSP 1 Score: 292 bits (748), Expect = 2.170e-87
Identity = 145/232 (62.50%), Postives = 184/232 (79.31%), Query Frame = 1
Query:   10 YVVSCQVFGKMQKSKKQADLDKAKYIKMLARMYPGLRIAHVDEA-DGAFYSVLSKNSGSGDEMEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702
            YVVSCQ   K+ +S K  D  KAK +++L  M+P L++A+V+   DG  +SVL +   +   + ++Y + LPG IL+GEGKPNNQNHA+IFTRGEAVQAIDMNQD +LEDA+K RQ++ EF F  GG     N  RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL +RFHYGHPDLFD++S+MT+GGISKASKGI+LSEDIF GFN++LRGG++TQA+YIQV
Sbjct: 1210 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRYDEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGGFNFILRGGKATQAEYIQV 1436          
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A6H5L5X7_9PHAE (GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X7_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 5.830e-79
Identity = 132/214 (61.68%), Postives = 166/214 (77.57%), Query Frame = 1
Query:   10 YVVSCQVFGKMQKSKKQADLDKAKYIKMLARMYPGLRIAHVDEA-DGAFYSVLSKNSGSGDEMEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAG 648
            YVVSCQ   K+ +S K  D  KAK +++L  M+P L++A+V+   DG  +SVL +   +   + ++Y + LPG IL+GEGKPNNQNHA+IFTRGEAVQAIDMNQD +LEDA+K RQ++ EF F  GG     N  RIVGFRE VFTHDVS++ANFFSLQEL+FV++ QR LD PL +RFHYGHPDLFD++S+MT+GGISKASKGI+LSEDIF G
Sbjct:  636 YVVSCQQHAKLLRSGKDEDRAKAKSVELLMEMHPSLKVAYVESGKDGRHHSVLIRYDEARSRIVKQYEVELPGPILLGEGKPNNQNHAIIFTRGEAVQAIDMNQDGSLEDALKARQLLGEFDFNGGG-----NHARIVGFREFVFTHDVSSIANFFSLQELSFVTSIQRFLDKPLAVRFHYGHPDLFDKVSAMTLGGISKASKGINLSEDIFGG 844          
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A835ZD62_9STRA (1,3-beta-glucan synthase component-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD62_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.010e-76
Identity = 123/176 (69.89%), Postives = 147/176 (83.52%), Query Frame = 1
Query:  193 MEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFAD------GGTGR-GRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQ 699
            M EEYR+ LPG ILVGEGKPNNQNHA+IFTRGEA+QAIDMNQD +LE+A+K R++++EF F +      GG  R   N+GRIVGFREHVFTH+VS++ANFFSLQE  FV+ATQR LD PL IRFHYGHPD+FD+ +++T GGIS+ SKGIHLSEDIFAGF +VLRGG S+Q DYIQ
Sbjct:    1 MLEEYRVELPGQILVGEGKPNNQNHAIIFTRGEAIQAIDMNQDGSLEEALKQREMLQEFGFGERRIGLLGGRSREAPNLGRIVGFREHVFTHNVSSIANFFSLQETGFVTATQRVLDEPLAIRFHYGHPDVFDKTTAITQGGISRPSKGIHLSEDIFAGFYWVLRGGRSSQLDYIQ 176          
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A836C8X3_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8X3_9STRA)

HSP 1 Score: 254 bits (650), Expect = 3.140e-74
Identity = 138/240 (57.50%), Postives = 172/240 (71.67%), Query Frame = 1
Query:    7 RYVVSCQVFGKMQKSKKQADLDKAKYIKMLARMYPGLRIAHV--------DEADGAFYSVLSKNSGSGDEMEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTG-RGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQ 699
            RYVVSCQ+   M+  K +    +A YI  LA+ +PGL IA+V         E     YSVL++   SGD ++EE+RI+LPG ILVGEGKPNNQN A++FTRG+AVQAIDMNQD  LE+A K R+++  F F     G R  N G IVGFREH+FTH  SAVA +FSLQE  FV+ATQR LD+PL IRFHYGHPDLFD+I+++T GG S+ S  +HLSEDI AG+ +VLRGG+S Q D+IQ
Sbjct: 1094 RYVVSCQILPAMRLKKAK----EAVYIDWLAQNHPGLCIAYVLEVKEDTGGEKTHEHYSVLAR--WSGDSLKEEHRIQLPGTILVGEGKPNNQNQAMVFTRGDAVQAIDMNQDLGLEEAFKQREMLANFRFGGHARGERAHNAGLIVGFREHIFTHAASAVAMYFSLQESGFVTATQRVLDDPLGIRFHYGHPDLFDKITAITQGGNSRPSTKLHLSEDILAGYVWVLRGGDSIQLDFIQ 1327          
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A453DH39_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DH39_AEGTS)

HSP 1 Score: 239 bits (610), Expect = 9.420e-74
Identity = 136/244 (55.74%), Postives = 171/244 (70.08%), Query Frame = 1
Query:   10 YVVSCQVFGKMQKSKKQADLDKAKYIKML--ARMYPGLRIAHVDEADG---------AFYSVLSKNSGSGDEMEEE-YRIRLPGHIL-VGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702
            YVVSCQV+G MQK  K A  +KA+Y+ +L    MYP LRIA++DE +           +YSVL K  G GD+ +EE YRI+LPG    +GEGKP NQNHA+IFTRGEA+Q IDMNQD  LE+A K+R V+EEF      T  G++   I+G REH+FT  VS++A F S QE +FV+  QR L NPL +RFHYGHPD+FDR+  +T GGISKASK I+LSEDIF+GFN  +RGG  T  +Y+QV
Sbjct:  146 YVVSCQVYG-MQKVSKDAK-EKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVK--GVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 381          
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A7S3U6Q4_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U6Q4_9SPIT)

HSP 1 Score: 241 bits (616), Expect = 2.750e-70
Identity = 129/252 (51.19%), Postives = 172/252 (68.25%), Query Frame = 1
Query:   10 YVVSCQVFG--KMQKSKKQADLDKAKYIKMLARMYPGLRIAHVDEA---------DGA--------FYSVLSKNSGSGDE--MEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702
            YVVSCQ++G  K  +  K AD +       L + +P LR+A+VD+          DG         FYSVL K S  G E  +++ YR++LPG +++GEGKP NQNHA+IFTRGEA+QAIDMNQ   LE+A+K+R ++ EF    G T        IVGFREH+FT  +S++A++ +LQE  FV+ TQR L NPLHIR HYGHPD+FD+I ++T GG+SKASKGIHLSED++AGFN+ LRGG+   A+Y+QV
Sbjct:  313 YVVSCQMYGTHKRNRDPKAADTE------FLLQRFPNLRVAYVDKTSTLSKIPYPDGTSALRETIRFYSVLIKGSKEGGEEAVQQVYRVQLPGDMMLGEGKPENQNHAVIFTRGEALQAIDMNQCGYLEEALKMRNLLGEFRKTPGAT--------IVGFREHIFTGQLSSLASYMALQEGTFVTLTQRVLSNPLHIRQHYGHPDVFDKIFALTTGGVSKASKGIHLSEDVYAGFNHTLRGGKVPYAEYVQV 550          
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A453DH34_AEGTS (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453DH34_AEGTS)

HSP 1 Score: 239 bits (610), Expect = 4.110e-70
Identity = 136/244 (55.74%), Postives = 171/244 (70.08%), Query Frame = 1
Query:   10 YVVSCQVFGKMQKSKKQADLDKAKYIKML--ARMYPGLRIAHVDEADG---------AFYSVLSKNSGSGDEMEEE-YRIRLPGHIL-VGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702
            YVVSCQV+G MQK  K A  +KA+Y+ +L    MYP LRIA++DE +           +YSVL K  G GD+ +EE YRI+LPG    +GEGKP NQNHA+IFTRGEA+Q IDMNQD  LE+A K+R V+EEF      T  G++   I+G REH+FT  VS++A F S QE +FV+  QR L NPL +RFHYGHPD+FDR+  +T GGISKASK I+LSEDIF+GFN  +RGG  T  +Y+QV
Sbjct:  140 YVVSCQVYG-MQKVSKDAK-EKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVK--GVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 375          
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A453DH26_AEGTS (Uncharacterized protein n=3 Tax=Triticinae TaxID=1648030 RepID=A0A453DH26_AEGTS)

HSP 1 Score: 239 bits (610), Expect = 6.330e-69
Identity = 136/244 (55.74%), Postives = 171/244 (70.08%), Query Frame = 1
Query:   10 YVVSCQVFGKMQKSKKQADLDKAKYIKML--ARMYPGLRIAHVDEADG---------AFYSVLSKNSGSGDEMEEE-YRIRLPGHIL-VGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702
            YVVSCQV+G MQK  K A  +KA+Y+ +L    MYP LRIA++DE +           +YSVL K  G GD+ +EE YRI+LPG    +GEGKP NQNHA+IFTRGEA+Q IDMNQD  LE+A K+R V+EEF      T  G++   I+G REH+FT  VS++A F S QE +FV+  QR L NPL +RFHYGHPD+FDR+  +T GGISKASK I+LSEDIF+GFN  +RGG  T  +Y+QV
Sbjct:  587 YVVSCQVYG-MQKVSKDAK-EKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVK--GVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 822          
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Match: A0A453DH27_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453DH27_AEGTS)

HSP 1 Score: 239 bits (610), Expect = 6.370e-69
Identity = 136/244 (55.74%), Postives = 171/244 (70.08%), Query Frame = 1
Query:   10 YVVSCQVFGKMQKSKKQADLDKAKYIKML--ARMYPGLRIAHVDEADG---------AFYSVLSKNSGSGDEMEEE-YRIRLPGHIL-VGEGKPNNQNHALIFTRGEAVQAIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHDVSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGISKASKGIHLSEDIFAGFNYVLRGGESTQADYIQV 702
            YVVSCQV+G MQK  K A  +KA+Y+ +L    MYP LRIA++DE +           +YSVL K  G GD+ +EE YRI+LPG    +GEGKP NQNHA+IFTRGEA+Q IDMNQD  LE+A K+R V+EEF      T  G++   I+G REH+FT  VS++A F S QE +FV+  QR L NPL +RFHYGHPD+FDR+  +T GGISKASK I+LSEDIF+GFN  +RGG  T  +Y+QV
Sbjct:  591 YVVSCQVYG-MQKVSKDAK-EKARYLNILNLMMMYPSLRIAYIDEVEAPNKDGMTEKTYYSVLVK--GVGDKYDEEIYRIKLPGKPTNIGEGKPENQNHAIIFTRGEALQVIDMNQDNYLEEAFKMRNVLEEFE----STKYGKSKPTILGLREHIFTGSVSSLAWFMSNQETSFVTIGQRVLANPLKVRFHYGHPDIFDRLFHITRGGISKASKTINLSEDIFSGFNSTMRGGNITHHEYMQV 826          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10038.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU6_ECTSI2.650e-14987.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXN7_ECTSI2.170e-8762.501,3-beta-glucan synthase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L5X7_9PHAE5.830e-7961.68GT48 protein (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD62_9STRA1.010e-7669.891,3-beta-glucan synthase component-domain-containi... [more]
A0A836C8X3_9STRA3.140e-7457.501,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A453DH39_AEGTS9.420e-7455.74Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A7S3U6Q4_9SPIT2.750e-7051.19Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A453DH34_AEGTS4.110e-7055.74Uncharacterized protein n=4 Tax=Triticinae TaxID=1... [more]
A0A453DH26_AEGTS6.330e-6955.74Uncharacterized protein n=3 Tax=Triticinae TaxID=1... [more]
A0A453DH27_AEGTS6.370e-6955.74Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10038contigH-elongata_contig10038:1527..3359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score427.2
Seed ortholog evalue5.1e-117
Seed eggNOG ortholog2880.D7FIU6
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycosyl transferase, family 48
Ec32 orthologEc-00_000820.1
Exons4
Model size711
Cds size711
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10038.40.1prot_H-elongata_contig10038.40.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10038 1527..3359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929546.3261182-CDS-H-elongata_contig10038:1526..17421622929546.3261182-CDS-H-elongata_contig10038:1526..1742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10038 1527..1742 +
1691679063.3641012-CDS-H-elongata_contig10038:1526..17421691679063.3641012-CDS-H-elongata_contig10038:1526..1742Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10038 1527..1742 +
1622929546.339263-CDS-H-elongata_contig10038:2179..23171622929546.339263-CDS-H-elongata_contig10038:2179..2317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10038 2180..2317 +
1691679063.375163-CDS-H-elongata_contig10038:2179..23171691679063.375163-CDS-H-elongata_contig10038:2179..2317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10038 2180..2317 +
1622929546.351563-CDS-H-elongata_contig10038:2656..28361622929546.351563-CDS-H-elongata_contig10038:2656..2836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10038 2657..2836 +
1691679063.3971455-CDS-H-elongata_contig10038:2656..28361691679063.3971455-CDS-H-elongata_contig10038:2656..2836Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10038 2657..2836 +
1622929546.3618166-CDS-H-elongata_contig10038:3182..33591622929546.3618166-CDS-H-elongata_contig10038:3182..3359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10038 3183..3359 +
1691679063.408392-CDS-H-elongata_contig10038:3182..33591691679063.408392-CDS-H-elongata_contig10038:3182..3359Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10038 3183..3359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10038.40.1

>prot_H-elongata_contig10038.40.1 ID=prot_H-elongata_contig10038.40.1|Name=mRNA_H-elongata_contig10038.40.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=237bp
LNRYVVSCQVFGKMQKSKKQADLDKAKYIKMLARMYPGLRIAHVDEADGA
FYSVLSKNSGSGDEMEEEYRIRLPGHILVGEGKPNNQNHALIFTRGEAVQ
AIDMNQDATLEDAIKIRQVMEEFHFADGGTGRGRNIGRIVGFREHVFTHD
VSAVANFFSLQELNFVSATQRALDNPLHIRFHYGHPDLFDRISSMTMGGI
SKASKGIHLSEDIFAGFNYVLRGGESTQADYIQVDDT
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mRNA from alignment at H-elongata_contig10038:1527..3359+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10038.40.1 ID=mRNA_H-elongata_contig10038.40.1|Name=mRNA_H-elongata_contig10038.40.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1833bp|location=Sequence derived from alignment at H-elongata_contig10038:1527..3359+ (Himanthalia elongata Himel1 dioecious)
TTGAATAGGTACGTCGTGTCGTGCCAGGTGTTCGGAAAGATGCAAAAATC TAAGAAGCAGGCGGACCTGGACAAAGCCAAGTACATCAAAATGCTTGCGC GCATGTACCCGGGTCTTCGCATCGCCCACGTGGATGAGGCAGACGGGGCG TTCTATTCGGTGCTCTCCAAGAACTCAGGAAGTGGCGATGAAATGGAAGA GGAGTACCGCATTCGGGTGAGTGACTTCTTGTAAGGAGCGGAAGGCGAAG GGCACAAAGGATCGCACGGAGTGTATATCGTTCCGTGGGCGTGGTTCATG ATCTAGAAGTTGGTTTTTCCAGCTCTATTTTTAAAGGTCCTCGTGACGGC GGGTCGATCGTTCGATCCGGCTACACGTCCTTTAGGGGCATCCATTATTT TTGTAGTGAGTGTGTTGGAATAACACCACTAATAATTGAGTATTTATTCC GTCAATATCCTTGATATGAGAAGGAAATAATGTTGGCGACGCCTGATGCG GCTGATTTCTCTTCTAGAGTTTGAGAGTTTGCTCGTTATGTTACCCTCGT GTTGATTTTACGCAGTTTGATAATAGCTCCGCATTGTCAACTCATGCTGT GCATATCAATGTGTGTGTGTTTGCGTGGTGGTGGTGCCATGGCGTTTTTA CAGCTTCCCGGTCACATCCTGGTGGGAGAAGGTAAGCCAAACAACCAAAA CCACGCGCTGATCTTCACGCGCGGGGAGGCCGTCCAGGCCATCGACATGA ATCAGGATGCTACGCTCGAGGACGCCATCAAGATCCGCCAGGTAAGACAC TTGCGGCTTTCGCACTTGTAGTATTGAATGCCAGGTCGTAATTATAATGC TGAGCGCATATACCTTACAGTATGCATGGAAGGCGAGGGGGGGTACATGG CGCTTGCTTGGGGAAAGCGAGTGGGCTGTCGAAGCTGTGCCGCGCGGTTG TGGGTACAGTTCTACTCTTTTGTAAATAAGTTATCGCGCGCAGAGGAGGT TTACCAATCAGGACCAACTTCAATGCAAAATGTCTTTACTGTTGAGTAGA TTATTAGTCCTTGCTACACATGTCTGAGTGCCGTGGTATACTGTAGAATG TGAAGCGCATCATCCAATTCTGTGGATCAGGTGATGGAGGAGTTCCACTT CGCAGATGGAGGCACGGGGCGAGGGCGCAATATCGGCCGCATCGTGGGTT TCCGCGAACACGTGTTCACCCACGACGTGTCGGCGGTCGCTAACTTCTTC AGTTTACAGGAGCTCAACTTCGTCTCGGCCACGCAGCGTGCCCTCGACAA CCCACTTCACGTAAGAAAACTCCACATCGTGAGGAAAAGCATCCTGAAGC ATAATAAAATATTATAAGCGTAAGGGTGATTTTCGGGAGAGCTTTTTGAG AAAGAATAAACCAACTTGTCTCTCCCAATTTTGTTCTAGTAAAATTACTA AATATATATATATATACTACTATATATATAGACAAGTGCTTGCTTCCGCG TTTGTGTCGTGTGTCATATCCATTGTTGGTGACGGACAAATACATGTCGG ACAACTGCTGCCGTGCTCTCTCCAAACATGTTTTGTGACAAAACCACTCG ACCCCCCCCCCATCCCCCGCCCCGCTTTCTCACCGGGTCGCGTGATGCCT CCCCAGATCCGGTTCCACTACGGCCACCCAGACCTGTTCGATCGAATTAG CTCCATGACCATGGGAGGCATCAGCAAGGCCTCCAAGGGCATCCACCTGT CCGAGGACATATTCGCCGGCTTCAACTACGTGCTGCGTGGGGGCGAGTCT ACTCAGGCGGACTACATCCAGGTGGATGACACG
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Coding sequence (CDS) from alignment at H-elongata_contig10038:1527..3359+

>mRNA_H-elongata_contig10038.40.1 ID=mRNA_H-elongata_contig10038.40.1|Name=mRNA_H-elongata_contig10038.40.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1422bp|location=Sequence derived from alignment at H-elongata_contig10038:1527..3359+ (Himanthalia elongata Himel1 dioecious)
TTGAATAGGTACGTCGTGTCGTGCCAGGTGTTCGGAAAGATGCAAAAATC
TAAGAAGCAGGCGGACCTGGACAAAGCCAAGTACATCAAAATGCTTGCGC
GCATGTACCCGGGTCTTCGCATCGCCCACGTGGATGAGGCAGACGGGGCG
TTCTATTCGGTGCTCTCCAAGAACTCAGGAAGTGGCGATGAAATGGAAGA
GGAGTACCGCATTCGGTTGAATAGGTACGTCGTGTCGTGCCAGGTGTTCG
GAAAGATGCAAAAATCTAAGAAGCAGGCGGACCTGGACAAAGCCAAGTAC
ATCAAAATGCTTGCGCGCATGTACCCGGGTCTTCGCATCGCCCACGTGGA
TGAGGCAGACGGGGCGTTCTATTCGGTGCTCTCCAAGAACTCAGGAAGTG
GCGATGAAATGGAAGAGGAGTACCGCATTCGGCTTCCCGGTCACATCCTG
GTGGGAGAAGGTAAGCCAAACAACCAAAACCACGCGCTGATCTTCACGCG
CGGGGAGGCCGTCCAGGCCATCGACATGAATCAGGATGCTACGCTCGAGG
ACGCCATCAAGATCCGCCAGCTTCCCGGTCACATCCTGGTGGGAGAAGGT
AAGCCAAACAACCAAAACCACGCGCTGATCTTCACGCGCGGGGAGGCCGT
CCAGGCCATCGACATGAATCAGGATGCTACGCTCGAGGACGCCATCAAGA
TCCGCCAGGTGATGGAGGAGTTCCACTTCGCAGATGGAGGCACGGGGCGA
GGGCGCAATATCGGCCGCATCGTGGGTTTCCGCGAACACGTGTTCACCCA
CGACGTGTCGGCGGTCGCTAACTTCTTCAGTTTACAGGAGCTCAACTTCG
TCTCGGCCACGCAGCGTGCCCTCGACAACCCACTTCACGTGATGGAGGAG
TTCCACTTCGCAGATGGAGGCACGGGGCGAGGGCGCAATATCGGCCGCAT
CGTGGGTTTCCGCGAACACGTGTTCACCCACGACGTGTCGGCGGTCGCTA
ACTTCTTCAGTTTACAGGAGCTCAACTTCGTCTCGGCCACGCAGCGTGCC
CTCGACAACCCACTTCACATCCGGTTCCACTACGGCCACCCAGACCTGTT
CGATCGAATTAGCTCCATGACCATGGGAGGCATCAGCAAGGCCTCCAAGG
GCATCCACCTGTCCGAGGACATATTCGCCGGCTTCAACTACGTGCTGCGT
GGGGGCGAGTCTACTCAGGCGGACTACATCCAGGTGGATGACACGATCCG
GTTCCACTACGGCCACCCAGACCTGTTCGATCGAATTAGCTCCATGACCA
TGGGAGGCATCAGCAAGGCCTCCAAGGGCATCCACCTGTCCGAGGACATA
TTCGCCGGCTTCAACTACGTGCTGCGTGGGGGCGAGTCTACTCAGGCGGA
CTACATCCAGGTGGATGACACG
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