mRNA_H-elongata_contig16162.3932.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16162.3932.1
Unique NamemRNA_H-elongata_contig16162.3932.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Match: A0A6H5KW94_9PHAE (HELICc2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW94_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.100e-44
Identity = 74/87 (85.06%), Postives = 78/87 (89.66%), Query Frame = 2 
Query:    2 ENPHVIGQDQAWIGTLGRGVTNVALNSSYANRDNDHYKDELGATLANLCRIVPGGMLVFFSTYRTMNDCVQRWKHHENGKTWSRIAA 262
            ENPHVIG +QAWIGTLGRG T+V LNSSYANRDND YKDELGATLANLCRIVPGG+LVFFSTYRTMNDCV RWKH  NGK W+RI A
Sbjct:   38 ENPHVIGPEQAWIGTLGRGPTSVTLNSSYANRDNDSYKDELGATLANLCRIVPGGVLVFFSTYRTMNDCVHRWKHFSNGKAWARIMA 124
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BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Match: D8LG74_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG74_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 8.630e-24
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 2 
Query:   20 GQDQAWIGTLGRGVTNVALNSSYANRDNDHYKDELGATLANLCRIVPGGMLVFFST 187
            G+ +AWIGTLGRG T+V LNSSYANRDND+YKDELGATLANLCRIVPGG+LVFFST
Sbjct:  517 GKAKAWIGTLGRGPTSVTLNSSYANRDNDNYKDELGATLANLCRIVPGGVLVFFST 572
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BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Match: A0A383WD75_TETOB (DNA helicase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WD75_TETOB)

HSP 1 Score: 101 bits (251), Expect = 4.660e-23
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 2 
Query:    2 ENPHVIGQDQAWIGTLGRGVTNVALNSSYANRDNDHYKDELGATLANLCRIVPGGMLVFFSTYRTMNDCVQRWK 223
            ENPHVI  DQ W+G +G G T V LNSS+ANR++D YKDELG  + N  R+VP G+LVFF  Y  M  C+  WK
Sbjct:  535 ENPHVINNDQVWVGVIGSGPTGVTLNSSFANRNSDRYKDELGHAIVNFARVVPDGLLVFFPAYGVMQSCLDHWK 608
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BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Match: A0A7J7QL77_9CHLO (DNA helicase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QL77_9CHLO)

HSP 1 Score: 98.6 bits (244), Expect = 4.120e-22
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:    2 ENPHVIGQDQAWIGTLGRGVTNVALNSSYANRDNDHYKDELGATLANLCRIVPGGMLVFFSTYRTMNDCVQRWK 223
            ENPHV+  +Q W+G +G G T V LNSSYANR++D YKDELG  + N  R+VP G+LVFF +Y  +  C+  WK
Sbjct:  639 ENPHVVQSNQVWVGVVGSGPTGVPLNSSYANRNSDRYKDELGHAIVNFARVVPDGLLVFFPSYAVLQSCLDHWK 712
[Close]
BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Match: A0A8J4R6P3_9ROSI (Uncharacterized protein n=2 Tax=Fagaceae TaxID=3503 RepID=A0A8J4R6P3_9ROSI)

HSP 1 Score: 91.3 bits (225), Expect = 1.470e-19
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:    2 ENPHVIGQDQAWIGTLGRGVTNVALNSSYANRDNDHYKDELGATLANLCRIVPGGMLVFFSTYRTMNDCVQRWKH--HENGKT-WSRI 256
            ENPHVI   Q W G +  G ++ + NSSY NRD+  YK ELG  + N  RIVP G+LVFFS+Y  M+ C+  WK+  H N  T W RI
Sbjct:  463 ENPHVITPSQIWAGVVSAGPSSCSFNSSYRNRDSVEYKQELGNAIVNFARIVPDGLLVFFSSYYIMDQCIGCWKNMSHANSTTIWERI 550
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BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Match: A0A7N2LPJ0_QUELO (Uncharacterized protein n=2 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2LPJ0_QUELO)

HSP 1 Score: 91.3 bits (225), Expect = 1.510e-19
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = 2 
Query:    2 ENPHVIGQDQAWIGTLGRGVTNVALNSSYANRDNDHYKDELGATLANLCRIVPGGMLVFFSTYRTMNDCVQRWKH--HENGKT-WSRI 256
            ENPHVI   Q W G +  G ++ + NSSY NRD+  YK ELG  + N  RIVP G+LVFFS+Y  M+ C+  WK+  H N  T W RI
Sbjct:  504 ENPHVITPSQIWAGVVSAGPSSCSFNSSYRNRDSVEYKQELGNAIVNFARIVPDGLLVFFSSYYIMDQCIGCWKNMSHANSTTIWERI 591
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BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Match: E1ZD09_CHLVA (DNA helicase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZD09_CHLVA)

HSP 1 Score: 90.9 bits (224), Expect = 2.090e-19
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 2 
Query:    2 ENPHVIGQDQA---WIGTLGRGVTNVALNSSYANRDNDHYKDELGATLANLCRIVPGGMLVFFSTYRTMNDCVQRWKHHENG---KTWSRIA 259
            ENPHVI ++QA   W+G +  G +  ALNSSY NR+N  Y+ +LG  L N CRI+P G+LVFF++Y  +  CV  WK   +      W RIA
Sbjct:  813 ENPHVIAKEQASGVWVGVVPTGPSGHALNSSYQNRENAAYRSDLGQALVNFCRIIPDGLLVFFTSYAQLQSCVATWKQVPSSGGPSIWERIA 904
[Close]
BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Match: A0A0D2LMT3_9CHLO (Regulator of telomere elongation helicase 1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2LMT3_9CHLO)

HSP 1 Score: 89.4 bits (220), Expect = 3.520e-19
Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 2 
Query:    2 ENPHVIGQDQAWIGTLGRGVTNVALNSSYANRDNDHYKDELGATLANLCRIVPGGMLVFFSTYRTMNDCVQRWKHHE---NGKTWSRI 256
            ENPH++ Q Q W+G +  G T  +LNSSYA+R    Y+D+LG  L N  R VP G+LVFF  Y  M  C++ WK          W RI
Sbjct:  141 ENPHIVEQHQVWVGVVPSGPTGASLNSSYASRSTQRYRDDLGNALVNFARAVPDGLLVFFPAYSVMTSCLEHWKAPPALGGASVWERI 228
[Close]
BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Match: A0A453EZH5_AEGTS (HELICc2 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453EZH5_AEGTS)

HSP 1 Score: 87.4 bits (215), Expect = 2.120e-18
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:    2 ENPHVIGQDQAWIGTLGRGVTNVALNSSYANRDNDHYKDELGATLANLCRIVPGGMLVFFSTYRTMNDCVQRWKHHEN 235
            ENPHVI QDQ W+G +  G +   LNSSY  R+   YK ELG  + N  RIVP G+LVFF +Y  M+ C+  WK+  +
Sbjct:  101 ENPHVISQDQIWVGVVPVGPSGHPLNSSYRTRETVKYKQELGTVIVNFARIVPDGLLVFFPSYSMMDKCIDYWKNRNH 178
[Close]
BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Match: A0A453EZY5_AEGTS (HELICc2 domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453EZY5_AEGTS)

HSP 1 Score: 87.4 bits (215), Expect = 2.150e-18
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:    2 ENPHVIGQDQAWIGTLGRGVTNVALNSSYANRDNDHYKDELGATLANLCRIVPGGMLVFFSTYRTMNDCVQRWKHHEN 235
            ENPHVI QDQ W+G +  G +   LNSSY  R+   YK ELG  + N  RIVP G+LVFF +Y  M+ C+  WK+  +
Sbjct:    3 ENPHVISQDQIWVGVVPVGPSGHPLNSSYRTRETVKYKQELGTVIVNFARIVPDGLLVFFPSYSMMDKCIDYWKNRNH 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16162.3932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW94_9PHAE1.100e-4485.06HELICc2 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LG74_ECTSI8.630e-2485.71Helicase ATP-binding domain-containing protein n=1... [more]
A0A383WD75_TETOB4.660e-2356.76DNA helicase n=1 Tax=Tetradesmus obliquus TaxID=30... [more]
A0A7J7QL77_9CHLO4.120e-2254.05DNA helicase n=1 Tax=Scenedesmus sp. NREL 46B-D3 T... [more]
A0A8J4R6P3_9ROSI1.470e-1950.00Uncharacterized protein n=2 Tax=Fagaceae TaxID=350... [more]
A0A7N2LPJ0_QUELO1.510e-1950.00Uncharacterized protein n=2 Tax=Quercus lobata Tax... [more]
E1ZD09_CHLVA2.090e-1946.74DNA helicase n=1 Tax=Chlorella variabilis TaxID=55... [more]
A0A0D2LMT3_9CHLO3.520e-1944.32Regulator of telomere elongation helicase 1 n=1 Ta... [more]
A0A453EZH5_AEGTS2.120e-1848.72HELICc2 domain-containing protein n=1 Tax=Aegilops... [more]
A0A453EZY5_AEGTS2.150e-1848.72HELICc2 domain-containing protein n=1 Tax=Aegilops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16162contigH-elongata_contig16162:2011..3623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size264
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16162.3932.1prot_H-elongata_contig16162.3932.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16162 2011..3623 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929947.3099265-CDS-H-elongata_contig16162:2010..20411622929947.3099265-CDS-H-elongata_contig16162:2010..2041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16162 2011..2041 +
1691679219.102416-CDS-H-elongata_contig16162:2010..20411691679219.102416-CDS-H-elongata_contig16162:2010..2041Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16162 2011..2041 +
1622929947.3281283-CDS-H-elongata_contig16162:2495..26501622929947.3281283-CDS-H-elongata_contig16162:2495..2650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16162 2496..2650 +
1691679219.1112914-CDS-H-elongata_contig16162:2495..26501691679219.1112914-CDS-H-elongata_contig16162:2495..2650Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16162 2496..2650 +
1622929947.351937-CDS-H-elongata_contig16162:3545..36231622929947.351937-CDS-H-elongata_contig16162:3545..3623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16162 3546..3623 +
1691679219.12396-CDS-H-elongata_contig16162:3545..36231691679219.12396-CDS-H-elongata_contig16162:3545..3623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16162 3546..3623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16162.3932.1

>prot_H-elongata_contig16162.3932.1 ID=prot_H-elongata_contig16162.3932.1|Name=mRNA_H-elongata_contig16162.3932.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
GEPPRHRTRSGVDRHAWPRSDQRGPQQLVRQPRQRSLQGRARRDPGEPVS
HRPRGHVGVFFDVSHHERLCTALEAPRKWQDVVQDSGA
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mRNA from alignment at H-elongata_contig16162:2011..3623+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16162.3932.1 ID=mRNA_H-elongata_contig16162.3932.1|Name=mRNA_H-elongata_contig16162.3932.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1613bp|location=Sequence derived from alignment at H-elongata_contig16162:2011..3623+ (Himanthalia elongata Himel1 dioecious)
GGAGAACCCCCACGTCATCGGACAAGATCAGGTGTGCGACGTGCGACATT
TAGTCTAGGGGCGGCGAGCCAAGGAGAGGCAGCACAAGAGCAAAAAAGAA
GAATAATAAATGGACCGTGCATCCGTGTCGCGGACACGAGCACGAGTTAA
TATAGTTTACCTATATACTCACCTCCAACACGTCAATGAGCACGAAACAT
CAAAGCACTGTCAAGGAAAGAGAGCAGGTTACCAAATTTTGAGTTGCAGC
CCACACACAAATGTATATATAGATATATAAATATATAGATATTCTGTGTG
GTGTGCGTATCTGTCTCTATATCTTGTCTTTTATATAGACTACTGTATAT
ACTGAATAACTCGTAGTAGTGGGTGTGGGTGTGTGTCTACCGTATCTCTG
CCGTGTGTAACCGTTGTGCCTTTTTCACTTGTCGCCCGATTTTGCCTCGT
TGGGTGCGGTCGGGCGGGCACGCGCGCGCGGACAGGCGTGGATCGGCACG
CTTGGCCGAGGAGTGACCAACGTGGCCCTCAACAGCTCGTACGCCAACCG
CGACAACGATCATTACAAGGACGAGCTCGGCGCGACCCTGGCGAACCTGT
GTCGCATCGTCCCCGGGGGCATGTTGGTGTTTTTTTCGACGTGAGGCATT
GGCAGAGATAGGTCATTTGTTTTGCTTTAGAGAGACGCATTCGATATATA
TATATATATATATATATATATACACATAATTATATAGAGAGAAAGAGAGG
ATGGTGTGTGTGTATGTGTATGTAATTATTAAATTGCACCACATAACCGC
GCCACATGGCCCTGACATACTAATCTTTCTATGCTACTCGTATATATTAT
CTCTTATGGGAGATCAAAGATAGCTTCCGTTACAACAGCTTAATATAAGA
CGCGACAGAGGCGACACCCTCTCTCTCTCTCTCTACGCCTTTCTCTTACG
TGTGTGGACGGGTGAAAGCGTGGTCGATGAACCCGGGTGGACTCAGTTGT
CTTGTTAATAGTTCGGATAACACGAACAACGTAAGCATACACATCAGCAC
CGTGGAGGGTTATTTTTTCCTTGTGTAACATAATAGAGGATGATGTTGAG
TTGACCCAGGGCTGGCGACTAATACCTTGGGTGACTCAAGCACACCACCG
CCTGATGTGCGGCGATTTTGTCCGGAAACATGTACGAAGTACTAAATATA
TTTATATTCCAGCGGTGCAAAGCCCTTGAAGCCCCCCCGCCCCTCCACCC
CGACCCTCTCCCACCTAGCTGAATCAAAGAGTAGTATTTATAATAACCGT
TGTAAGAAACCTCTGACGGGATATCTGTGCTTTTTAATCTCTCAATTTCT
TCCTACAATAGTTAGTATCTATATATATATTCTTTCTCCCGCCGCCTCGC
TTCCTTTCAACAATACTAGCCACTAATAACTCCTCCCCCTCCCCCAAGAG
AGACCGGAAAATGCCGACAAATGCATGTAAAACCTCCGTCGACGCGGCGA
GAAATGTATCTCGATCGGCGACGACAACGGCGCAGGTATCGCACCATGAA
CGACTGTGTACAGCGCTGGAAGCACCACGAAAATGGCAAGACGTGGTCCA
GGATAGCGGCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig16162:2011..3623+

>mRNA_H-elongata_contig16162.3932.1 ID=mRNA_H-elongata_contig16162.3932.1|Name=mRNA_H-elongata_contig16162.3932.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig16162:2011..3623+ (Himanthalia elongata Himel1 dioecious)
GGAGAACCCCCACGTCATCGGACAAGATCAGGGAGAACCCCCACGTCATC
GGACAAGATCAGGCGTGGATCGGCACGCTTGGCCGAGGAGTGACCAACGT
GGCCCTCAACAGCTCGTACGCCAACCGCGACAACGATCATTACAAGGACG
AGCTCGGCGCGACCCTGGCGAACCTGTGTCGCATCGTCCCCGGGGGCATG
TTGGTGTTTTTTTCGACGCGTGGATCGGCACGCTTGGCCGAGGAGTGACC
AACGTGGCCCTCAACAGCTCGTACGCCAACCGCGACAACGATCATTACAA
GGACGAGCTCGGCGCGACCCTGGCGAACCTGTGTCGCATCGTCCCCGGGG
GCATGTTGGTGTTTTTTTCGACGTATCGCACCATGAACGACTGTGTACAG
CGCTGGAAGCACCACGAAAATGGCAAGACGTGGTCCAGGATAGCGGCGCA
GTATCGCACCATGAACGACTGTGTACAGCGCTGGAAGCACCACGAAAATG
GCAAGACGTGGTCCAGGATAGCGGCGCA
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