mRNA_H-elongata_contig161423.3924.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig161423.3924.1
Unique NamemRNA_H-elongata_contig161423.3924.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Match: D7G1K9_ECTSI (Catalase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K9_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.190e-36
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 QVTTPELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAIKFYSEEGNWDLVGNNTPI 204
            +VTTPELK LCK KMF HVGKRTPVAVRFSTVGGESGSADTARDPRGFA+KFYSEEGNWDLVGNNTPI
Sbjct:   82 EVTTPELKGLCKGKMFSHVGKRTPVAVRFSTVGGESGSADTARDPRGFAVKFYSEEGNWDLVGNNTPI 149
[Close]
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Match: A0A2Z5VL07_CHAMQ (Catalase n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=A0A2Z5VL07_CHAMQ)

HSP 1 Score: 128 bits (322), Expect = 1.950e-33
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 QVTTPELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAIKFYSEEGNWDLVGNNTPI 204
            +VTTPE  + C+SKMF  VGKRTPV VRFSTVGGESGSADTARDPRGFA+KFYSEEGNWDLVGNNTPI
Sbjct:   82 EVTTPEAAKFCRSKMFSRVGKRTPVGVRFSTVGGESGSADTARDPRGFAVKFYSEEGNWDLVGNNTPI 149
[Close]
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Match: B2M0K0_ANAPL (Catalase (Fragment) n=2 Tax=Anatinae TaxID=2068716 RepID=B2M0K0_ANAPL)

HSP 1 Score: 117 bits (292), Expect = 1.820e-32
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:   10 TPELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAIKFYSEEGNWDLVGNNTPI 204
            T ++ + CK+K+F H+GKRTP+A+RFSTV GESGSADT RDPRGFA+KFY+EEGNWDLVGNNTPI
Sbjct:   33 THDITKYCKAKVFEHIGKRTPIAIRFSTVAGESGSADTVRDPRGFAMKFYTEEGNWDLVGNNTPI 97
[Close]
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Match: A0A6V2Q5M4_HETAK (Catalase n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2Q5M4_HETAK)

HSP 1 Score: 125 bits (315), Expect = 1.920e-32
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 QVTTPELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAIKFYSEEGNWDLVGNNTPI 204
            +VTTPE  + C++KMF  +GKRTPV VRFSTVGGESGSADTARDPRGFA+KFYSEEGNWDLVGNNTPI
Sbjct:   83 EVTTPEAAKYCRAKMFNKLGKRTPVGVRFSTVGGESGSADTARDPRGFAVKFYSEEGNWDLVGNNTPI 150
[Close]
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Match: A0A1Y3BPV5_EURMA (Catalase-like protein (Fragment) n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3BPV5_EURMA)

HSP 1 Score: 118 bits (296), Expect = 3.560e-32
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 QVTTPELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAIKFYSEEGNWDLVGNNTPI 204
            +VT+  + + CK+K+F  VGKRTPVAVRFSTVGGESGSADT RDPRGFAIKFY+E+GNWDLVGNNTPI
Sbjct:   35 EVTSNSINKYCKAKLFDTVGKRTPVAVRFSTVGGESGSADTVRDPRGFAIKFYTEQGNWDLVGNNTPI 102
[Close]
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Match: A0A7J5Z1Y1_DISMA (Catalase domain-containing protein n=1 Tax=Dissostichus mawsoni TaxID=36200 RepID=A0A7J5Z1Y1_DISMA)

HSP 1 Score: 116 bits (291), Expect = 7.330e-32
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:   10 TPELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAIKFYSEEGNWDLVGNNTPI 204
            T ++   CK+K+F HVGK TPVAVRFSTV GESGSADT RDPRGFA+KFYSEEGNWDL GNNTPI
Sbjct:   81 THDISRYCKAKLFEHVGKTTPVAVRFSTVAGESGSADTVRDPRGFAVKFYSEEGNWDLTGNNTPI 145
[Close]
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Match: A0A7L3G900_9AVES (CATA Catalase (Fragment) n=1 Tax=Anhinga rufa TaxID=317792 RepID=A0A7L3G900_9AVES)

HSP 1 Score: 116 bits (290), Expect = 1.230e-31
Identity = 49/65 (75.38%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:   10 TPELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAIKFYSEEGNWDLVGNNTPI 204
            T ++ + CK+K+F H GKRTP+A+RFSTV GESGSADT RDPRGFA+KFY+EEGNWDLVGNNTPI
Sbjct:   10 THDITQYCKAKVFEHTGKRTPIAIRFSTVAGESGSADTVRDPRGFAMKFYTEEGNWDLVGNNTPI 74
[Close]
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Match: A0A7S3M8J1_9STRA (Catalase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8J1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.640e-31
Identity = 55/68 (80.88%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 QVTTPELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAIKFYSEEGNWDLVGNNTPI 204
            QVT+PE++  C +KMF  VGK+TP AVRFSTVGGESGSADTARDPRGFA+KFY+EEGNWDLVGNNTPI
Sbjct:   88 QVTSPEIQNYCSAKMFSTVGKKTPAAVRFSTVGGESGSADTARDPRGFAMKFYTEEGNWDLVGNNTPI 155
[Close]
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Match: Q6PTE7_PRICU (Catalase (Fragment) n=5 Tax=Priapulus caudatus TaxID=37621 RepID=Q6PTE7_PRICU)

HSP 1 Score: 118 bits (296), Expect = 2.230e-31
Identity = 50/63 (79.37%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:   16 ELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAIKFYSEEGNWDLVGNNTPI 204
            ++ + CK+K+F HVGKRTP+AVRFSTVGGE GSADTARDPRGFA+KFY+EEGNWDLVGNNTP+
Sbjct:    1 DITQYCKAKIFEHVGKRTPMAVRFSTVGGEKGSADTARDPRGFALKFYTEEGNWDLVGNNTPV 63
[Close]
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Match: W7T2K9_9STRA (Catalase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2K9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.430e-31
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 QVTTPELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAIKFYSEEGNWDLVGNNTPI 204
            +VT+P +  +C++K+F  VGKRTPVAVRFSTVGGESGSADTARDPRGFA+KFY+EEGNWD+VGNNTPI
Sbjct:   84 EVTSPFISSICRAKLFSAVGKRTPVAVRFSTVGGESGSADTARDPRGFAVKFYTEEGNWDMVGNNTPI 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig161423.3924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1K9_ECTSI1.190e-3692.65Catalase n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A2Z5VL07_CHAMQ1.950e-3385.29Catalase n=1 Tax=Chattonella marina var. antiqua T... [more]
B2M0K0_ANAPL1.820e-3275.38Catalase (Fragment) n=2 Tax=Anatinae TaxID=2068716... [more]
A0A6V2Q5M4_HETAK1.920e-3282.35Catalase n=2 Tax=Heterosigma akashiwo TaxID=2829 R... [more]
A0A1Y3BPV5_EURMA3.560e-3277.94Catalase-like protein (Fragment) n=1 Tax=Euroglyph... [more]
A0A7J5Z1Y1_DISMA7.330e-3278.46Catalase domain-containing protein n=1 Tax=Dissost... [more]
A0A7L3G900_9AVES1.230e-3175.38CATA Catalase (Fragment) n=1 Tax=Anhinga rufa TaxI... [more]
A0A7S3M8J1_9STRA1.640e-3180.88Catalase n=1 Tax=Spumella elongata TaxID=89044 Rep... [more]
Q6PTE7_PRICU2.230e-3179.37Catalase (Fragment) n=5 Tax=Priapulus caudatus Tax... [more]
W7T2K9_9STRA3.430e-3177.94Catalase n=2 Tax=Monodopsidaceae TaxID=425072 RepI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig161423contigH-elongata_contig161423:514..1458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score117.5
Seed ortholog evalue2.5e-24
Seed eggNOG ortholog6500.XP_005090060.1
KEGG rclassRC00034,RC00767,RC02141,RC02755
KEGG koko:K03781
KEGG ReactionR00009,R00602,R02670
KEGG Pathwayko00380,ko00630,ko01110,ko01130,ko01200,ko04011,ko04016,ko04068,ko04146,ko04211,ko04212,ko04213,ko05014,map00380,map00630,map01110,map01130,map01200,map04011,map04016,map04068,map04146,map04211,map04212,map04213,map05014
KEGG ModuleM00532
EggNOG free text desc.Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide
EggNOG OGs38BMC@33154,3BFAV@33208,3CSMT@33213,COG0753@1,KOG0047@2759
EC1.11.1.6
COG Functional cat.P
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.5585883-CDS-H-elongata_contig161423:513..6061622929946.5585883-CDS-H-elongata_contig161423:513..606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161423 514..606 +
1691679218.8286133-CDS-H-elongata_contig161423:513..6061691679218.8286133-CDS-H-elongata_contig161423:513..606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161423 514..606 +
1622929946.5737062-CDS-H-elongata_contig161423:1347..14581622929946.5737062-CDS-H-elongata_contig161423:1347..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161423 1348..1458 +
1691679218.8477814-CDS-H-elongata_contig161423:1347..14581691679218.8477814-CDS-H-elongata_contig161423:1347..1458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig161423 1348..1458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig161423.3924.1prot_H-elongata_contig161423.3924.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig161423 514..1458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig161423.3924.1

>prot_H-elongata_contig161423.3924.1 ID=prot_H-elongata_contig161423.3924.1|Name=mRNA_H-elongata_contig161423.3924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
QVTTPELKELCKSKMFRHVGKRTPVAVRFSTVGGESGSADTARDPRGFAI
KFYSEEGNWDLVGNNTPI
back to top

mRNA from alignment at H-elongata_contig161423:514..1458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig161423.3924.1 ID=mRNA_H-elongata_contig161423.3924.1|Name=mRNA_H-elongata_contig161423.3924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=945bp|location=Sequence derived from alignment at H-elongata_contig161423:514..1458+ (Himanthalia elongata Himel1 dioecious)
CAGGTGACCACCCCGGAGCTGAAGGAGCTGTGCAAGTCGAAGATGTTCCG
CCACGTCGGAAAGCGCACTCCGGTAGCCGTTCGCTTCTCCACGGTGAGTC
TTGTGTGTGACGTCACTCACTCGGTCGGTAGATCGGTCGGTGGTGGTGGG
TCGGTCGCTATTCGAGGGTCGAAAATACTGACAGCATGTGTATTGCCTCT
AGTCCTACCTATGTTGGTGTTTTGAAGCAAGGTCGAAAGTAAGGCAGCAG
GCTATACGGTCGAAAAAAAAAATGGAAAAATAATTGTTTCTAGCTCTATA
GGGCAAAGGAAACGGCATGATACTAATATATATATATTATGGGTCATTTC
GAAACGCTGTAAAGGGGGGCGAAAAAAAGGTGTTTTGGATCTCATCTGAA
GCACCCCCCCCCCCCCCCCTGGTTGTTAATGCTTCCAGTTGTATTGCTTT
TAAGAGGATCATTTGTAGAAAAAGGGGGGGGGGGGAAGCGTGTTACTGAG
TCATAGGGGTTCTCTCCTTGAAAGCCTCCAGTCCCGTCTCCTCTTGAAGC
ATTACCTTCCCGAGGAAACTAAGCCACTTGACGACTCTGTTGAAATAGGC
TATTTGTTTTGGCCTGCCAACCCCCCGTAGTCTCGAGACAGGCTTGGCCT
AATCCACGTACTCCTGATGTAGATAAATATTTTTCAACTAATAAAGAAAA
GTAGTGGGTTGGGGGGGGGGGGGATTTCTCAGATCACGTCCTCATCACCC
CTTTATCCCTTAAACATCGCCCCCTCCCGTGAAATTAAAAATTATGTATG
GTGGGGTTTCAACCGAAACGTTTCTGTGCTTTAGGTGGGCGGGGAGAGCG
GATCAGCGGACACGGCCCGCGACCCCCGAGGGTTCGCCATCAAATTCTAC
TCCGAAGAGGGTAACTGGGACCTGGTCGGCAACAACACGCCCATT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig161423:514..1458+

>mRNA_H-elongata_contig161423.3924.1 ID=mRNA_H-elongata_contig161423.3924.1|Name=mRNA_H-elongata_contig161423.3924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig161423:514..1458+ (Himanthalia elongata Himel1 dioecious)
CAGGTGACCACCCCGGAGCTGAAGGAGCTGTGCAAGTCGAAGATGTTCCG
CCACGTCGGAAAGCGCACTCCGGTAGCCGTTCGCTTCTCCACGCAGGTGA
CCACCCCGGAGCTGAAGGAGCTGTGCAAGTCGAAGATGTTCCGCCACGTC
GGAAAGCGCACTCCGGTAGCCGTTCGCTTCTCCACGGTGGGCGGGGAGAG
CGGATCAGCGGACACGGCCCGCGACCCCCGAGGGTTCGCCATCAAATTCT
ACTCCGAAGAGGGTAACTGGGACCTGGTCGGCAACAACACGCCCATTGTG
GGCGGGGAGAGCGGATCAGCGGACACGGCCCGCGACCCCCGAGGGTTCGC
CATCAAATTCTACTCCGAAGAGGGTAACTGGGACCTGGTCGGCAACAACA
CGCCCATT
back to top