mRNA_H-elongata_contig16139.3923.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16139.3923.1
Unique NamemRNA_H-elongata_contig16139.3923.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Match: D7FSX6_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX6_ECTSI)

HSP 1 Score: 483 bits (1244), Expect = 8.890e-165
Identity = 250/277 (90.25%), Postives = 258/277 (93.14%), Query Frame = 1
Query:   13 VEAVTERMPEAAVNLHGTRCVQKVVELCRTDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQRCLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSREETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQGRIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGATSSGRRIAAKIIKRYPTVDLGEEILMLMSRG 843
            VEAVT+RMPEAAVNLHGTRCVQKVVELCRTDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAIT SLVQVA+HRHGCCVLQRCLDAAGP+LRIKLI E       VARNGL+LMQDPFGNYVVQYVLKTCSREETY LCSAPLGHVASLSTQKFSSNVMEACLERA+PE+Q+KFVEELAQQGRIRELILDQYANYVVQRALTVA NEEGLKLV AIRPHLHSMQ+       TSSGRRIAAKIIKRYPTVDLGEEILMLMSRG
Sbjct:  467 VEAVTDRMPEAAVNLHGTRCVQKVVELCRTDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITASLVQVAIHRHGCCVLQRCLDAAGPNLRIKLIEE-------VARNGLRLMQDPFGNYVVQYVLKTCSREETYMLCSAPLGHVASLSTQKFSSNVMEACLERALPEVQSKFVEELAQQGRIRELILDQYANYVVQRALTVANNEEGLKLVNAIRPHLHSMQS-------TSSGRRIAAKIIKRYPTVDLGEEILMLMSRG 729          
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Match: A0A6H5JG61_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG61_9PHAE)

HSP 1 Score: 481 bits (1239), Expect = 1.570e-159
Identity = 249/277 (89.89%), Postives = 257/277 (92.78%), Query Frame = 1
Query:   13 VEAVTERMPEAAVNLHGTRCVQKVVELCRTDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQRCLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSREETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQGRIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGATSSGRRIAAKIIKRYPTVDLGEEILMLMSRG 843
            VEAV +RMPEAAVNLHGTRCVQKVVELCRTDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAIT SLVQVA+HRHGCCVLQRCLDAAGP+LRIKLI E       VARNGL+LMQDPFGNYVVQYVLKTCSREETY LCSAPLGHVASLSTQKFSSNVMEACLERA+PE+Q+KFVEELAQQGRIRELILDQYANYVVQRALTVA NEEGLKLV AIRPHLHSMQ+       TSSGRRIAAKIIKRYPTVDLGEEILMLMSRG
Sbjct:  855 VEAVADRMPEAAVNLHGTRCVQKVVELCRTDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITASLVQVAIHRHGCCVLQRCLDAAGPNLRIKLIEE-------VARNGLRLMQDPFGNYVVQYVLKTCSREETYMLCSAPLGHVASLSTQKFSSNVMEACLERALPEVQSKFVEELAQQGRIRELILDQYANYVVQRALTVASNEEGLKLVNAIRPHLHSMQS-------TSSGRRIAAKIIKRYPTVDLGEEILMLMSRG 1117          
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Match: A0A3R7AAA0_9STRA (PUM-HD domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7AAA0_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.190e-77
Identity = 133/270 (49.26%), Postives = 175/270 (64.81%), Query Frame = 1
Query:   13 VEAVTERMPEAAVNLHGTRCVQKVVELCRTDAQ---AAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQRCLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSREETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQGRIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGATSSGRRIAAKIIKRYPTVDLG 813
            V+ V   +  AA+NLHGTR VQKVVE+C + +      +I  +L    V+L +D NGNHV+QRALQ+MPA  N FV +A++     V  HRHGCCVLQRC+DAA P  R ++I +       V ++ +KLMQDP+GNYVVQYVL  CS  +   + +  +GHV  LS QKFSSNV+E CLE A   +   FV E+    R+  ++ DQYANYVVQRAL+VA +E  L LV A+RPHL       TS+  T  GRRI A+I+KR+P +D+G
Sbjct:  108 VQQVAHHLVAAALNLHGTRSVQKVVEICSSSSMPQLVELIVDALKDDAVRLCIDSNGNHVIQRALQYMPATYNQFVFDAVSAECTVVGTHRHGCCVLQRCVDAANPAQRREVIAQ-------VEKHAMKLMQDPYGNYVVQYVLDACSTADVVGVMTKCVGHVLELSIQKFSSNVIEKCLELAPDYLCQTFVREIIASPRMHRMLQDQYANYVVQRALSVASDENCLDLVTAMRPHL-------TSMKNTQGGRRIQARILKRFPHLDVG 363          
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Match: A0A7S2XV53_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV53_9STRA)

HSP 1 Score: 240 bits (612), Expect = 2.840e-75
Identity = 128/273 (46.89%), Postives = 177/273 (64.84%), Query Frame = 1
Query:   13 VEAVTERMPEAAVNLHGTRCVQKVVELCRT-DAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQRCLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSREETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQGRIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGATSSGRRIAAKIIKRYPTVDLGEEILM 828
            ++ V   + +A++NLHGTR VQK++E CRT D Q  V+  +L P +++L LD NGNHVVQ+ +Q +   + DF+  A+  SL  VA HRHGCCVLQRCLD+A P+ R  LI         V  N L+LMQD +GNYVVQYVL   ++ + + +C   LGHV +LS QKFSSNV+E CLE+A   +    + E++    + EL+ DQ+ANYVVQR+L VA +    +LV  I+PHL  ++        TS GRRI AKI+KR+P  DLG++ L+
Sbjct:   21 LQTVKNHLVKASLNLHGTRSVQKILEHCRTNDEQVKVVREALEPHILQLCLDGNGNHVVQKGVQCLGVDQRDFLYRAVGQSLPAVACHRHGCCVLQRCLDSASPEQRRGLI-------AVVVVNALQLMQDAYGNYVVQYVLDIGTQLDAWSVCEKCLGHVHNLSIQKFSSNVVEKCLEKANDRLLNLMISEISNPSSLAELLNDQFANYVVQRSLVVAPHAVATELVDNIKPHLPQLRN-------TSGGRRIIAKILKRFPKTDLGDDFLV 279          
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Match: A0A1V9YPP5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPP5_9STRA)

HSP 1 Score: 245 bits (626), Expect = 1.080e-73
Identity = 133/263 (50.57%), Postives = 173/263 (65.78%), Query Frame = 1
Query:   13 VEAVTERMPEAAVNLHGTRCVQKVVELCRTDAQ-AAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQRCLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSREETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQGRIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGATSSGRRIAAKIIKRYP 798
            V+ V+  +  AA+NLHGTR VQKVVE+C TD   A +I ++L    V+L +D NGNHV+QRALQ +PA  N FV +A+      V  HRHGCCVLQRC+DAA    +  +I++       V  + +KLMQDP+GNYVVQYVL  C  +ET  L +   GHV  LS QKFSSNV+E CLE A  E++  FV E+    R+  ++ DQ+ANYVVQRAL+VA +E  L LV AI+PHL +M+        TS GRRI A+I+KR+P
Sbjct:  328 VKRVSPHLVAAALNLHGTRSVQKVVEVCATDRTLATIIVKALRGDAVRLCIDSNGNHVIQRALQFLPADFNQFVFDAVATDCTVVGTHRHGCCVLQRCVDAANEAQKRAVISQ-------VELHAMKLMQDPYGNYVVQYVLDACPNDETVGLMAKCAGHVYELSVQKFSSNVVEKCLELAPYELRQAFVREIIASPRMHRMLQDQFANYVVQRALSVASDELCLDLVHAIQPHLPAMKN-------TSGGRRIQARILKRFP 576          
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Match: A0A833SFT8_PHYIN (Pumilio-family RNA binding repeat domain-containing protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SFT8_PHYIN)

HSP 1 Score: 240 bits (613), Expect = 1.840e-72
Identity = 130/302 (43.05%), Postives = 177/302 (58.61%), Query Frame = 1
Query:   13 VEAVTERMPEAAVNLHGTRCVQKVVELC--------------------------------RTDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQRCLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSREETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQGRIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGATSSGRRIAAKIIKRYPTVDLGEEI 822
            +  V+  +  AA+NLHGTR VQKVVE+C                                RT +   +I  +L    V+L +D NGNHV+QRALQ M    N FV +A+      V  HRHGCCVLQRCLDAA    + ++I +       V R  +KLMQDP+GNYVVQYVL +C+ EE + +   PLGH+  LS QKFSSNV+E CLE+A   ++ K++ E+    ++ +++ DQ+ANYVVQRAL V   E+ L LV AIRPHL +M+        TS GRRI A+I+KR+P +D+  ++
Sbjct:  153 IRRVSSNLVAAALNLHGTRSVQKVVEVCATSSSVIEEDFDEEEEGEEYGYEERPEGGKGRRTTSLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANKTQKAEVIAQ-------VERQAMKLMQDPYGNYVVQYVLDSCTAEEAFGVIMKPLGHIYELSVQKFSSNVIEKCLEKAPERVRQKYIAEITSCPKMNKMLQDQFANYVVQRALCVCAEEQCLLLVKAIRPHLAAMKN-------TSGGRRITARILKRFPNMDISMDM 440          
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Match: A0A6G0WN87_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WN87_9STRA)

HSP 1 Score: 241 bits (616), Expect = 1.180e-71
Identity = 131/270 (48.52%), Postives = 174/270 (64.44%), Query Frame = 1
Query:   13 VEAVTERMPEAAVNLHGTRCVQKVVELCRTDAQAAVI---ARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQRCLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSREETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQGRIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGATSSGRRIAAKIIKRYPTVDLG 813
            V+ V+  +  AA+NLHGTR VQKVVE+C + +   +I     +L    V+L +D NGNHV+QRALQ MP+  N FV +A+      V  HRHGCCVLQRC+DAA    + ++I +       V ++ +KLMQDP+GNYVVQYVL  C   +   +    +GHV  LS QKFSSNV+E CLE A   ++  FV+E+    R+  ++ DQYANYVVQRAL+VA  E  L+LVAAIRPHL SM+        T  GRRI A+I+KR+P +D+G
Sbjct:  378 VQHVSFHLVAAALNLHGTRSVQKVVEICASSSHPLLIELIVDALKEDAVRLCIDSNGNHVIQRALQFMPSEYNQFVFDAVCAECTVVGTHRHGCCVLQRCVDAANASQKKEVIAQ-------VEKHAMKLMQDPYGNYVVQYVLDACLPADALGVMEKCVGHVFELSIQKFSSNVIEKCLELAPDYLRQTFVKEIIASPRMYRMLQDQYANYVVQRALSVASEENCLQLVAAIRPHLASMKN-------TQGGRRIQARILKRFPHLDVG 633          
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Match: A0A8K1C9G3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C9G3_PYTOL)

HSP 1 Score: 246 bits (628), Expect = 1.950e-71
Identity = 131/282 (46.45%), Postives = 178/282 (63.12%), Query Frame = 1
Query:   13 VEAVTERMPEAAVNLHGTRCVQKVVELCRTDAQAA----------------VIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQRCLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSREETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQGRIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGATSSGRRIAAKIIKRYPTVDL 810
            +  V+  +  AA+NLHGTR VQKVVE+C T A+                  +I  +L    V+L +D NGNHV+QRALQ M    N FV +A+      V  HRHGCCVLQRCLDAA    + ++I +       V +  +KLMQDP+GNYVVQYVL +C+ EE Y +   PLG+V  LS QKFSSNV+E CLE+A P +  ++++E+    ++++++ DQ+ANYVVQRAL VA  ++ L LV AIRPHL +M+        TS GRRI A+I+KR+P +DL
Sbjct:  636 IRRVSGNLVAAALNLHGTRSVQKVVEVCATSAEVVELDSDGNELRRVNLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCKECTTVGTHRHGCCVLQRCLDAANDTQKREVITQ-------VEKQAMKLMQDPYGNYVVQYVLDSCTAEEAYGVIVKPLGNVFELSIQKFSSNVIEKCLEKAPPVVLTQYIDEITTCPKMQKMLQDQFANYVVQRALCVASEDQCLALVKAIRPHLVAMKN-------TSGGRRITARILKRFPHMDL 903          
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Match: A0A485KML4_9STRA (Aste57867_9189 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KML4_9STRA)

HSP 1 Score: 241 bits (616), Expect = 2.280e-71
Identity = 133/270 (49.26%), Postives = 173/270 (64.07%), Query Frame = 1
Query:   13 VEAVTERMPEAAVNLHGTRCVQKVVELCRTDAQAAV---IARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQRCLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSREETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQGRIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGATSSGRRIAAKIIKRYPTVDLG 813
            V+ V   +  AA+NLHGTR VQKVVE+C + +Q A+   I  +L    V+L +D NGNHV+QRALQ+MP+  N FV +A+      V  HRHGCCVLQRC+DAA    + ++I +       V  + +KLMQDP+GNYVVQYVL  CS  +   +    + HV  LS QKFSSNV+E CLE A   ++  FV E+    R+  ++ DQYANYVVQRAL+VA  E  L LVAAIRPHL SM+        T  GRRI A+I+KR+P +D+G
Sbjct:  410 VQHVAFHLVAAALNLHGTRSVQKVVEICASSSQPALVQLIVDALKEDAVRLCIDSNGNHVIQRALQYMPSEYNQFVFDAVCAECTVVGTHRHGCCVLQRCVDAANVVQKAEVIAQ-------VEAHAMKLMQDPYGNYVVQYVLDACSAADALGVMQKCVTHVFELSIQKFSSNVIEKCLELAPDGLRQTFVREIIACPRMYRMLQDQYANYVVQRALSVASEENCLALVAAIRPHLASMKN-------TQGGRRIQARILKRFPHLDVG 665          
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Match: A0A0N7L824_PLAHL (Rna-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L824_PLAHL)

HSP 1 Score: 243 bits (620), Expect = 2.150e-70
Identity = 131/297 (44.11%), Postives = 177/297 (59.60%), Query Frame = 1
Query:   13 VEAVTERMPEAAVNLHGTRCVQKVVELC------------------------------RTDAQAAVIARSLGPSVVKLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQRCLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSREETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQGRIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGATSSGRRIAAKIIKRYPTVDLG 813
            +  V+  +  AA+NLHGTR VQKVVE+C                              RT +   +I  +L    V+L +D NGNHV+QRALQ M    N FV +A+      V  HRHGCCVLQRCLDAA    + ++I +       V R  +KLMQDP+GNYVVQYVL +C+ EE Y +   PLGH+  LS QKFSSNV+E CLE+A   ++ +++ E+    ++ +++ DQ+ANYVVQRAL V   ++ L LV AIRPHL +M+        TS GRRI A+I+KR+PT+D+G
Sbjct:  595 IRRVSSNLVAAALNLHGTRSVQKVVEVCALSPNVIENDYHEEDCEEMRFASQGESETRRTTSLPDLIVEALKDDAVRLCIDSNGNHVIQRALQFMKPEYNQFVFDAVCQECTTVGTHRHGCCVLQRCLDAANKRQKTEVIEQ-------VERQAMKLMQDPYGNYVVQYVLDSCTAEEAYGVILKPLGHIFELSIQKFSSNVIEKCLEKAPERVRQQYIAEITTCLKLNKMLQDQFANYVVQRALCVCAEDQCLLLVKAIRPHLAAMKN-------TSGGRRITARILKRFPTMDMG 877          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16139.3923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSX6_ECTSI8.890e-16590.25PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JG61_9PHAE1.570e-15989.89PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A3R7AAA0_9STRA2.190e-7749.26PUM-HD domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A7S2XV53_9STRA2.840e-7546.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1V9YPP5_9STRA1.080e-7350.57Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A833SFT8_PHYIN1.840e-7243.05Pumilio-family RNA binding repeat domain-containin... [more]
A0A6G0WN87_9STRA1.180e-7148.52Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8K1C9G3_PYTOL1.950e-7146.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KML4_9STRA2.280e-7149.26Aste57867_9189 protein n=1 Tax=Aphanomyces stellat... [more]
A0A0N7L824_PLAHL2.150e-7044.11Rna-binding protein n=1 Tax=Plasmopara halstedii T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16139contigH-elongata_contig16139:957..4202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score485.7
Seed ortholog evalue1.4e-134
Seed eggNOG ortholog2880.D7FSX6
EggNOG free text desc.regulation of translation
EggNOG OGsCOG5099@1,KOG2049@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-27_006720.1
Exons7
Model size846
Cds size846
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.3073483-CDS-H-elongata_contig16139:956..10461622929946.3073483-CDS-H-elongata_contig16139:956..1046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 957..1046 +
1691679218.7557027-CDS-H-elongata_contig16139:956..10461691679218.7557027-CDS-H-elongata_contig16139:956..1046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 957..1046 +
1622929946.3249376-CDS-H-elongata_contig16139:1863..20341622929946.3249376-CDS-H-elongata_contig16139:1863..2034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 1864..2034 +
1691679218.77187-CDS-H-elongata_contig16139:1863..20341691679218.77187-CDS-H-elongata_contig16139:1863..2034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 1864..2034 +
1622929946.4074802-CDS-H-elongata_contig16139:2547..26551622929946.4074802-CDS-H-elongata_contig16139:2547..2655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 2548..2655 +
1691679218.7812831-CDS-H-elongata_contig16139:2547..26551691679218.7812831-CDS-H-elongata_contig16139:2547..2655Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 2548..2655 +
1622929946.462922-CDS-H-elongata_contig16139:2784..28641622929946.462922-CDS-H-elongata_contig16139:2784..2864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 2785..2864 +
1691679218.7925467-CDS-H-elongata_contig16139:2784..28641691679218.7925467-CDS-H-elongata_contig16139:2784..2864Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 2785..2864 +
1622929946.4786763-CDS-H-elongata_contig16139:3279..33971622929946.4786763-CDS-H-elongata_contig16139:3279..3397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 3280..3397 +
1691679218.8023653-CDS-H-elongata_contig16139:3279..33971691679218.8023653-CDS-H-elongata_contig16139:3279..3397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 3280..3397 +
1622929946.4980896-CDS-H-elongata_contig16139:3616..37981622929946.4980896-CDS-H-elongata_contig16139:3616..3798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 3617..3798 +
1691679218.8104038-CDS-H-elongata_contig16139:3616..37981691679218.8104038-CDS-H-elongata_contig16139:3616..3798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 3617..3798 +
1622929946.5143442-CDS-H-elongata_contig16139:4105..42021622929946.5143442-CDS-H-elongata_contig16139:4105..4202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 4106..4202 +
1691679218.8190675-CDS-H-elongata_contig16139:4105..42021691679218.8190675-CDS-H-elongata_contig16139:4105..4202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16139 4106..4202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16139.3923.1prot_H-elongata_contig16139.3923.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16139 957..4202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16139.3923.1

>prot_H-elongata_contig16139.3923.1 ID=prot_H-elongata_contig16139.3923.1|Name=mRNA_H-elongata_contig16139.3923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=282bp
MGFQVEAVTERMPEAAVNLHGTRCVQKVVELCRTDAQAAVIARSLGPSVV
KLSLDPNGNHVVQRALQHMPAPRNDFVLEAITDSLVQVAVHRHGCCVLQR
CLDAAGPDLRIKLINEASFLLPTVARNGLKLMQDPFGNYVVQYVLKTCSR
EETYHLCSAPLGHVASLSTQKFSSNVMEACLERAMPEIQAKFVEELAQQG
RIRELILDQYANYVVQRALTVAGNEEGLKLVAAIRPHLHSMQASITSLGA
TSSGRRIAAKIIKRYPTVDLGEEILMLMSRG*
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mRNA from alignment at H-elongata_contig16139:957..4202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16139.3923.1 ID=mRNA_H-elongata_contig16139.3923.1|Name=mRNA_H-elongata_contig16139.3923.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3246bp|location=Sequence derived from alignment at H-elongata_contig16139:957..4202+ (Himanthalia elongata Himel1 dioecious)
ATGGGCTTCCAGGTGGAGGCCGTGACGGAGCGCATGCCGGAGGCAGCCGT GAACCTCCACGGGACGCGTTGTGTACAGAAGGTCGTGGAGGTGAGACACG TACGCCAGGAGGCCTTCCCGGTCCGAGGCGACGTGATTGTTAACTTATGT GTCCACTAGGAGTTCCACTCTTCTATTTGGCTTTTTCTATGGTCTCTTAT CGCCTTGTTCACTGGTCTAGTCGGCCTTTCTAGTCTCTATTCGACGTTCC GCTTTCCCCCTCTACCGTATGCTCGTACGGCAGGCGAGACTTGTTTGTAG ATTAAGCGGGAAATCATCGGCCGAACCAAAATAAATTTCACCGCATGATC GCATGATTGATAGCTCTGACAACGAGGTAGTCGGTGACGGGACGATGTAA CTTTCACATCTCCGCCGATTCCAACTGTCGGGCGTTTACCGTTTTGCCGT TTAATTCCGCGCGATGTTTGACTTCGATGCATGTTGATTTGATGTTTGCT GATGTTCTAAAGACCTCACCCACCCATTCTCTCCGATTGGTCGATTTATT TGAATCTTGATGATACTGTACCTAATAATATCTCTATACCTGAAATTAGA GAGCTGTATGTTGTACGGTATATTATAATCGGGAGGAGTCTAAAACGCAA CATTCATATATATATATATAATATACATATTCGAGCGTTTTATGGGACAT TAGATATCATGTCCAGCGAAAAAATCGTCAGCGAGATTTATCCAGGGGGT ACGTTGATCACACGCGTCCAAAGTGGAATCATAACGCACGAATAATTGGA CTAATTGTTTTATTTACTGTGTCGTCCCCTTTCCCCACCCCTTCACGCCT CGTGTGACAAATTGAAACTCCCGTTTTCGTCCACACTTGGTGGTGTCATG TTTTTAGCTGTGCCGGACGGACGCCCAGGCTGCGGTGATCGCGCGAAGCC TTGGCCCGAGCGTAGTAAAGCTTTCTCTGGATCCCAACGGTAACCACGTC GTGCAGCGTGCTCTGCAGCACATGCCTGCCCCGAGGAACGATTTCGTTCT TGAGGCCATCACCGATAGTCTCGTGCAGGTGAGAATATCCTTTTGACACA TTTGGGAGTATGCGGCGTCGGCTAAAATCCTAGGTATAAAGATTTAGTGG GAATCTCGAGCCCGATTACTTTTCATTGAAGCGTGGCACCCCCACCCTCG TCCCCTGAATTGCACCTATCATGGCGCTAAGAAGGCGTGGACGTTCGGAG GGTTGGAATGAGTTCATGCCTTTTTTATATGACACGGCCGCAAAACCCCG GATTCTAAAATAAAGAAATACATCTCGTTTTCTGTAGTTTGTTTTTTCTT CTAAAAAACAAACGAACTCAATCAAACCCTCCGAACATCCAAACCTACCT TCATTTTATCACGAATAGTCAAGTCAATGGGATCTAGTTCCGCTTCTCTT GCTGCACTATCAGCGCCGAACTATTAATACTGTTTTATTGATTAAACAGT ACCGTACGTGTGTTGGTTGATCCATCATCCCTTTGCCCGACATATTTTGG ATGTTAATTTTTTTGTTTTTGTTTATCGGTGCTGTGCGTAGGTGGCGGTC CACAGGCATGGGTGCTGTGTCCTCCAACGGTGTCTGGATGCTGCAGGCCC GGACCTGAGGATCAAGCTCATCAACGAGGCAAGCTTTTTGTTACCGACTG TTTGAGTCGTCGTTCTGCTTGGTGCAGTCCAGCGCGTTCTTGTGTGTGGT GGATGTGATGCAGGGGGCAGTGGAATGGTGGCAACTCTTGACTGTGAATC CGATTGCGAAATTGATGTCTGCCTACAGGTGGCACGCAACGGCCTAAAGC TAATGCAAGATCCGTTTGGGAACTACGTGGTACAGTACGTGTTGAAGACG TGCTCGAGGTACGATACTATGCCTTCACCCCTCATGCAAATACGTTTGTC CAATAGTATTTAGACGAGCTAACTTCAGTCGCTGAATAAAAACTGAGATG TCACCCAGGAGTGGGTGAGAATAAAAATCTCCCCTTTTTCTTCCCTTCCC GTTAAATGAGCATAAAATAAATTGCTCAGCCAGAGTTAGTTCTTGATGTC ATAGTCCGCCTGTAGTAGTTGTGGTTGAGAAATAGAAGGGATCGATGATT TCGATCTCTCGAGGAGGCGTTACTTTTCTAACACCCCACAGTCCTGGCTT GTCTGATGGAACGAATAGAGTACTGATTGGATTCGGTTATCAAGAACGAT GATCGTGTAATCATAGATCTTAAAGCACGATTGTGCCTGATCAAAGTTAC CGTCTCTCGGTTGTCGACGACAGAGAGGAGACCTATCACCTGTGCTCGGC GCCGCTGGGGCATGTGGCGTCGCTCTCTACGCAGAAATTCTCTTCGAACG TTATGGAGGCGTGTCTGGAACGGGCCATGCCGGAGATTCAGGTACGCCAA AACTTCTCTCTGCCCCGTGCATTGTGCTGCTGATGATCTGTTCAATGGGC TCGACAATCAATCGATATTCTACGTTCCGACATGGGTTGCTCTGCTGACT TATATGATAAACTTTGCGGGAAAATATATCGACTTCTTTTTGAAAATAAG ATATAATTTGGTACCAAAACGATCAAATAATCGCGTCTCTTGGATACACA ACTCCCACAGGCTAAATTTGTGGAGGAGCTTGCTCAGCAGGGGAGGATCA GAGAGCTCATTTTGGACCAGTACGCCAACTACGTGGTCCAGCGCGCGTTG ACGGTGGCCGGCAATGAGGAAGGTCTCAAGCTCGTCGCCGCGATTCGGCC GCACCTTCACTCCATGCAGGCGAGCATTACTAGTCTTGGGGCGTACACAG AGCGATTGATCCTTCTTGGTGAGATAGGTTGTTGGATCAGGAGAGGAAGC TGGCGCGCGCGCGCGAGTGCATTCCGCGGAGAGCAATATAAAAAATAATA CTTGTTACTTACTCGCAAAACGCGCTTTCGTGATATTTTTGGCGTCGTCT CGAGGTCTTCGTAGATGCGTTGCCCGCGTGGTGGTTGGTCAGGGCTGAGA GGCTGCAGTCTAGGGCATGACACGATTTGACCCTGTGTGTATTTTTGTAT CTGTCCTTTGCTCCCTTTGCGTCTCAATTGGTAATCGGCCATCGCAGAGC ACCTCCAGCGGCCGTCGCATTGCCGCGAAGATCATCAAGCGCTATCCAAC CGTCGACCTGGGCGAGGAAATTCTAATGCTCATGAGCAGGGGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig16139:957..4202+

>mRNA_H-elongata_contig16139.3923.1 ID=mRNA_H-elongata_contig16139.3923.1|Name=mRNA_H-elongata_contig16139.3923.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1692bp|location=Sequence derived from alignment at H-elongata_contig16139:957..4202+ (Himanthalia elongata Himel1 dioecious)
ATGGGCTTCCAGGTGGAGGCCGTGACGGAGCGCATGCCGGAGGCAGCCGT
GAACCTCCACGGGACGCGTTGTGTACAGAAGGTCGTGGAGATGGGCTTCC
AGGTGGAGGCCGTGACGGAGCGCATGCCGGAGGCAGCCGTGAACCTCCAC
GGGACGCGTTGTGTACAGAAGGTCGTGGAGCTGTGCCGGACGGACGCCCA
GGCTGCGGTGATCGCGCGAAGCCTTGGCCCGAGCGTAGTAAAGCTTTCTC
TGGATCCCAACGGTAACCACGTCGTGCAGCGTGCTCTGCAGCACATGCCT
GCCCCGAGGAACGATTTCGTTCTTGAGGCCATCACCGATAGTCTCGTGCA
GCTGTGCCGGACGGACGCCCAGGCTGCGGTGATCGCGCGAAGCCTTGGCC
CGAGCGTAGTAAAGCTTTCTCTGGATCCCAACGGTAACCACGTCGTGCAG
CGTGCTCTGCAGCACATGCCTGCCCCGAGGAACGATTTCGTTCTTGAGGC
CATCACCGATAGTCTCGTGCAGGTGGCGGTCCACAGGCATGGGTGCTGTG
TCCTCCAACGGTGTCTGGATGCTGCAGGCCCGGACCTGAGGATCAAGCTC
ATCAACGAGGCAAGCTTTTTGTTACCGACTGTGGCGGTCCACAGGCATGG
GTGCTGTGTCCTCCAACGGTGTCTGGATGCTGCAGGCCCGGACCTGAGGA
TCAAGCTCATCAACGAGGCAAGCTTTTTGTTACCGACTGTGGCACGCAAC
GGCCTAAAGCTAATGCAAGATCCGTTTGGGAACTACGTGGTACAGTACGT
GTTGAAGACGTGCTCGAGGTGGCACGCAACGGCCTAAAGCTAATGCAAGA
TCCGTTTGGGAACTACGTGGTACAGTACGTGTTGAAGACGTGCTCGAGAG
AGGAGACCTATCACCTGTGCTCGGCGCCGCTGGGGCATGTGGCGTCGCTC
TCTACGCAGAAATTCTCTTCGAACGTTATGGAGGCGTGTCTGGAACGGGC
CATGCCGGAGATTCAGAGAGGAGACCTATCACCTGTGCTCGGCGCCGCTG
GGGCATGTGGCGTCGCTCTCTACGCAGAAATTCTCTTCGAACGTTATGGA
GGCGTGTCTGGAACGGGCCATGCCGGAGATTCAGGCTAAATTTGTGGAGG
AGCTTGCTCAGCAGGGGAGGATCAGAGAGCTCATTTTGGACCAGTACGCC
AACTACGTGGTCCAGCGCGCGTTGACGGTGGCCGGCAATGAGGAAGGTCT
CAAGCTCGTCGCCGCGATTCGGCCGCACCTTCACTCCATGCAGGCGAGCA
TTACTAGTCTTGGGGCGCTAAATTTGTGGAGGAGCTTGCTCAGCAGGGGA
GGATCAGAGAGCTCATTTTGGACCAGTACGCCAACTACGTGGTCCAGCGC
GCGTTGACGGTGGCCGGCAATGAGGAAGGTCTCAAGCTCGTCGCCGCGAT
TCGGCCGCACCTTCACTCCATGCAGGCGAGCATTACTAGTCTTGGGGCCA
CCTCCAGCGGCCGTCGCATTGCCGCGAAGATCATCAAGCGCTATCCAACC
GTCGACCTGGGCGAGGAAATTCTAATGCTCATGAGCAGGGGATGACACCT
CCAGCGGCCGTCGCATTGCCGCGAAGATCATCAAGCGCTATCCAACCGTC
GACCTGGGCGAGGAAATTCTAATGCTCATGAGCAGGGGATGA
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