mRNA_H-elongata_contig16028.3870.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig16028.3870.1
Unique Name	mRNA_H-elongata_contig16028.3870.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig16028.3870.1 vs. uniprot

BLAST of mRNA_H-elongata_contig16028.3870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig16028	contig	H-elongata_contig16028:2188..4767 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	481
Cds size	468
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig16028.3870.1	prot_H-elongata_contig16028.3870.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig16028 2188..4756 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929941.0594893-CDS-H-elongata_contig16028:2187..2274	1622929941.0594893-CDS-H-elongata_contig16028:2187..2274	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig16028 2188..2274 -
1691679216.5322776-CDS-H-elongata_contig16028:2187..2274	1691679216.5322776-CDS-H-elongata_contig16028:2187..2274	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig16028 2188..2274 -
1622929941.078988-CDS-H-elongata_contig16028:4375..4756	1622929941.078988-CDS-H-elongata_contig16028:4375..4756	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig16028 4376..4756 -
1691679216.5397835-CDS-H-elongata_contig16028:4375..4756	1691679216.5397835-CDS-H-elongata_contig16028:4375..4756	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig16028 4376..4756 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929941.0981588-UTR-H-elongata_contig16028:4756..4767	1622929941.0981588-UTR-H-elongata_contig16028:4756..4767	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig16028 4757..4767 -
1691679216.5471528-UTR-H-elongata_contig16028:4756..4767	1691679216.5471528-UTR-H-elongata_contig16028:4756..4767	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig16028 4757..4767 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig16028:2188..4767-
coding sequence from alignment at H-elongata_contig16028:2188..4767-

protein sequence of mRNA_H-elongata_contig16028.3870.1

>prot_H-elongata_contig16028.3870.1 ID=prot_H-elongata_contig16028.3870.1|Name=mRNA_H-elongata_contig16028.3870.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MVRGGGGEGGIRGVGEGRLWETLGLDATDDDALYDGGMDYLGTNTGSDDA
TGQGQASPPPPPLWLSRTPPATAHACGQVPGSITLSGTDGAPADSGKGTR
MTGVAWRQPRDERPSLTSGSMWLERPKVSFKLPPRTVAFEPGRTSELTRK
RRRSWA

mRNA from alignment at H-elongata_contig16028:2188..4767-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig16028.3870.1 ID=mRNA_H-elongata_contig16028.3870.1|Name=mRNA_H-elongata_contig16028.3870.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2580bp|location=Sequence derived from alignment at H-elongata_contig16028:2188..4767- (Himanthalia elongata Himel1 dioecious)
GGGTTAAGGGCATGGTGAGAGGAGGTGGAGGAGAAGGAGGAATAAGAGGG
GTGGGAGAGGGCCGGCTCTGGGAAACGTTAGGGCTTGATGCCACTGACGA
TGATGCTCTGTACGATGGTGGTATGGATTATCTCGGGACGAACACGGGCT
CCGACGACGCCACAGGGCAGGGCCAAGCCTCACCCCCGCCGCCTCCTCTG
TGGCTCTCGAGGACGCCTCCTGCGACGGCCCACGCCTGTGGCCAGGTACC
GGGAAGCATTACCTTGAGTGGTACGGATGGAGCGCCAGCGGACAGCGGGA
AGGGGACGAGGATGACGGGGGTCGCCTGGCGGCAGCCGCGCGATGAGCGT
CCCTCTCTAACTTCAGGATCCATGTGGCTCGAGCGTCCAAAGGTGCGTAA
AGTATAACCATTTCAAGTCATTTCCTGGTAGCCATCAGAACATCTCTGTT
GTGGCGCAGCGGTTTGTTTGTGCGAAGGCTCCCCCCCCCTTCTCCCCCAC
GCGCTTTTTTGTTTTGTTTTATACTATACGAGTATACTTTATATAATATT
TCTAAAGTAATATAGTAATTTTGTGGGTGCGGTGCGGGCAGCCGAGTTGT
GCAACCACGTAAAGGAAATATTTGTCATCGTTCAATAACCCACACACGCG
CCGGCGGGGGTCAAAAGTAGTCTTCACACATAAGATCGACCCGTTGTGAT
ATAAACGCCGTTCTAGAGGTTGGAACACCCTCCAGCACGAGCTTCAACGA
CGTAACGCGAGTTAGCGCCGAAGGATCGCTTCCGCCGCCGCTTAGCTCGT
GTTATCTGTGTTGAGAACATGCTACGTAGGATCTACGATGGTGACCTTTA
GACGTATGGGTCCAAAATAACTTATCCGTGAAATGAGTCTCGAGAAGTAG
AAAATACAACTGATTTCTGGAAAATATAAAATATGCCTATAAATCTTCGA
CGTTTTTTCTAACAGCAACCCATCCTCTAGCATAGCCCATGATATGAGTA
CGAAGTATATTTTTTCTTGGAGAGAAAAATATAGCTGTGATAACCGTCGG
TTACCGTTACACGCTATGTACTAATAATATCAGTACTATGAGTAGTTTTG
TGGGAGCGTTCGAGCGTTTGATCGATCGTGTCAATGTGTAAGGTGTATGT
ATGTATGTATGTATGTATGTTCACACTTTCAGCAGAGTAAGATCAAAACC
GGATTTGGTTGCCTTCTGGTCGTGGTCAGCTAAACAAGGAAAATAATTTT
CCCCGCTGTCCCTGTTCGTGCCTGAGAATTTGGTTTCGCGAAACGGGTTC
AGCAGTCCCGTCCCGCGTCAGCTTGTTTATTCTCTCAGCCCAGGCTGAAT
CTGGTGTTTGTGTCCCGTATCCTCCTCCTTATCCCTTCCCTCTAAAGTCT
TACTGAGAACGCGTGGTCAATGGTCTAACAGACAAGGCATGTCGAGCTTC
AGTATGTGGAGGTTCATGCATTGTATCCTCTGAGCTCAAAACACCATAGA
TGTATAATCTTAGTCGAAAAGTATTTTCTCTATTGAGGGGTGAAAGGCAC
AATATTATGTTGGATGTCTATAGAAAAATGGAATGCTAGAAAGCCCTAGA
CCAAAACACCATACATGTATAATATTAGTCGAAAGGTATTTTCTCTATTG
AGGGGTGAAAGGCATAATATTATGTTGGATGTCTATAGAAAAATGGAATG
CTAGAAAGCCCTAGACTAACCAAAGACTTATTTCAGCTCCCCTCGCTAAA
AGTATTCATCAGCAGACTATAAATTCTGATGTCGAGAATATATGGGATGA
CATGACAGATTATGAATGGATCGTACATATATCGGTATGTATCTGGTGTG
CTTGTGGTACTTATTTTAATGCTTTCGCGTGGAGATCAAAGTTCCCTTGC
GGTGCCCGGTGTGGCTATAGTCGCACCCGCGTAATGAGCAACATTTTGCT
ACCCGATGTGGCATGTCATGTCATATCTTAATTAAAGCTCGTGGCATGTT
GTGTGTGTTTGGTGTAGAAAGCACAAGTATGATTACAAAAATACCCGGCA
TGTCGCTTGGTTCCGGCATATTTATATTTTTAAAACCTTGAACTCTTTCC
AACCCTCCAAACATCCACACCTTCTTAGCGCCGTGAGAGGTACCATCCAG
GGGACCAACTATCCTCAGGTTCGAATGTGTACATTACTACCTTTGAGCAC
AAAATAGTGACACGTGAGTATATTTAAAAAAGGATATAGGTCAGTAAAGC
ACATGGTTTCATTATGCATATATGTCGAAGAATACGGGATGTCCTTACCA
TTACATTATTACATTTCTCCCAGTAGCGACCATAATCATTCGAAACGAGT
CTCAATACAAGAACCGTGCAAGACTCTACGCGCTTATTATCCCTTTATCG
CCGTAAAACCTAACCCGAGCCTCCCCCTCCCCCCGTTATCACATGTCCTA
CCGTGTGCTTCCCAATCATCGCCGCCGGCACTGCTCGGGTTAGGTGTCTT
TTAAGCTGCCGCCTCGCACCGTAGCCTTCGAGCCGGGCCGTACATCCGAG
CTGACGCGAAAGCGTCGTAGGAGCTGGGCG

Coding sequence (CDS) from alignment at H-elongata_contig16028:2188..4767-

>mRNA_H-elongata_contig16028.3870.1 ID=mRNA_H-elongata_contig16028.3870.1|Name=mRNA_H-elongata_contig16028.3870.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig16028:2188..4767- (Himanthalia elongata Himel1 dioecious)
ATGGTGAGAGGAGGTGGAGGAGAAGGAGGAATAAGAGGGGTGGGAGAGGG
CCGGCTCTGGGAAACGTTAGGGCTTGATGCCACTGACGATGATGCTCTGT
ACGATGGTGGTATGGATTATCTCGGGACGAACACGGGCTCCGACGACGCC
ACAGGGCAGGGCCAAGCCTCACCCCCGCCGCCTCCTCTGTGGCTCTCGAG
GACGCCTCCTGCGACGGCCCACGCCTGTGGCCAGGTACCGGGAAGCATTA
CCTTGAGTGGTACGGATGGAGCGCCAGCGGACAGCGGGAAGGGGACGAGG
ATGACGGGGGTCGCCTGGCGGCAGCCGCGCGATGAGCGTCCCTCTCTAAC
TTCAGGATCCATGTGGCTCGAGCGTCCAAAGATGGTGAGAGGAGGTGGAG
GAGAAGGAGGAATAAGAGGGGTGGGAGAGGGCCGGCTCTGGGAAACGTTA
GGGCTTGATGCCACTGACGATGATGCTCTGTACGATGGTGGTATGGATTA
TCTCGGGACGAACACGGGCTCCGACGACGCCACAGGGCAGGGCCAAGCCT
CACCCCCGCCGCCTCCTCTGTGGCTCTCGAGGACGCCTCCTGCGACGGCC
CACGCCTGTGGCCAGGTACCGGGAAGCATTACCTTGAGTGGTACGGATGG
AGCGCCAGCGGACAGCGGGAAGGGGACGAGGATGACGGGGGTCGCCTGGC
GGCAGCCGCGCGATGAGCGTCCCTCTCTAACTTCAGGATCCATGTGGCTC
GAGCGTCCAAAGGTGTCTTTTAAGCTGCCGCCTCGCACCGTAGCCTTCGA
GCCGGGCCGTACATCCGAGCTGACGCGAAAGCGTCGTAGGAGCTGGGCGG
TGTCTTTTAAGCTGCCGCCTCGCACCGTAGCCTTCGAGCCGGGCCGTACA
TCCGAGCTGACGCGAAAGCGTCGTAGGAGCTGGGCG